Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDJ:S4:S3
Extra
PDB:
ATOM 1 O3' U A 3 -15.713 106.292 5.637 0.60 74.30 O
ATOM 2 P C A 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 3 OP1 C A 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 4 OP2 C A 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 5 O5' C A 4 -13.337 106.947 6.322 0.60 72.94 O
ATOM 6 C5' C A 4 -12.656 105.889 7.037 0.60 67.47 C
ATOM 7 C4' C A 4 -11.152 106.078 6.990 0.60 64.25 C
ATOM 8 O4' C A 4 -10.668 105.751 5.653 0.60 60.86 O
ATOM 9 C3' C A 4 -10.653 107.486 7.316 0.60 63.04 C
ATOM 10 O3' C A 4 -9.386 107.420 7.985 0.60 66.79 O
ATOM 11 C2' C A 4 -10.409 108.094 5.925 0.60 60.04 C
ATOM 12 O2' C A 4 -9.358 109.054 5.943 0.60 58.59 O
ATOM 13 C1' C A 4 -10.007 106.866 5.093 0.60 55.83 C
ATOM 14 N1 C A 4 -10.380 106.915 3.657 0.60 50.02 N
ATOM 15 C2 C A 4 -9.431 107.348 2.724 0.60 48.00 C
ATOM 16 O2 C A 4 -8.315 107.668 3.129 0.60 48.33 O
ATOM 17 N3 C A 4 -9.748 107.397 1.411 0.60 44.19 N
ATOM 18 C4 C A 4 -10.958 107.017 1.010 0.60 44.03 C
ATOM 19 N4 C A 4 -11.216 107.058 -0.304 0.60 41.63 N
ATOM 20 C5 C A 4 -11.959 106.568 1.934 0.60 44.19 C
ATOM 21 C6 C A 4 -11.629 106.538 3.239 0.60 46.35 C
ATOM 22 P A A 5 -9.304 107.011 9.552 0.60 66.70 P
ATOM 23 OP1 A A 5 -10.247 105.901 9.887 0.60 67.93 O
ATOM 24 OP2 A A 5 -9.340 108.245 10.403 0.60 67.74 O
ATOM 25 O5' A A 5 -7.807 106.471 9.668 0.60 65.54 O
TER
ATOM 1 O3' A B 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 2 P U B 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 3 OP1 U B 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 4 OP2 U B 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 5 O5' U B 3 -15.027 106.272 1.492 0.60 65.41 O
ATOM 6 C5' U B 3 -15.923 107.215 2.091 0.60 69.35 C
ATOM 7 C4' U B 3 -16.419 106.640 3.380 0.60 71.82 C
ATOM 8 O4' U B 3 -17.230 105.476 3.060 0.60 74.34 O
ATOM 9 C3' U B 3 -15.305 106.136 4.292 0.60 73.77 C
ATOM 10 O3' U B 3 -15.713 106.292 5.637 0.60 74.30 O
ATOM 11 C2' U B 3 -15.224 104.653 3.947 0.60 75.23 C
ATOM 12 O2' U B 3 -14.724 103.845 4.991 0.60 75.26 O
ATOM 13 C1' U B 3 -16.691 104.332 3.690 0.60 77.64 C
ATOM 14 N1 U B 3 -16.943 103.167 2.837 0.60 83.08 N
ATOM 15 C2 U B 3 -17.843 102.210 3.317 0.60 85.52 C
ATOM 16 O2 U B 3 -18.393 102.305 4.401 0.60 86.59 O
ATOM 17 N3 U B 3 -18.067 101.146 2.480 0.60 88.25 N
ATOM 18 C4 U B 3 -17.482 100.926 1.239 0.60 88.92 C
ATOM 19 O4 U B 3 -17.773 99.915 0.588 0.60 90.17 O
ATOM 20 C5 U B 3 -16.561 101.954 0.817 0.60 87.09 C
ATOM 21 C6 U B 3 -16.330 103.016 1.609 0.60 84.36 C
ATOM 22 P C B 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 23 OP1 C B 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 24 OP2 C B 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 25 O5' C B 4 -13.337 106.947 6.322 0.60 72.94 O
TER
ATOM 2 P C A 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 3 OP1 C A 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 4 OP2 C A 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 5 O5' C A 4 -13.337 106.947 6.322 0.60 72.94 O
ATOM 6 C5' C A 4 -12.656 105.889 7.037 0.60 67.47 C
ATOM 7 C4' C A 4 -11.152 106.078 6.990 0.60 64.25 C
ATOM 8 O4' C A 4 -10.668 105.751 5.653 0.60 60.86 O
ATOM 9 C3' C A 4 -10.653 107.486 7.316 0.60 63.04 C
ATOM 10 O3' C A 4 -9.386 107.420 7.985 0.60 66.79 O
ATOM 11 C2' C A 4 -10.409 108.094 5.925 0.60 60.04 C
ATOM 12 O2' C A 4 -9.358 109.054 5.943 0.60 58.59 O
ATOM 13 C1' C A 4 -10.007 106.866 5.093 0.60 55.83 C
ATOM 14 N1 C A 4 -10.380 106.915 3.657 0.60 50.02 N
ATOM 15 C2 C A 4 -9.431 107.348 2.724 0.60 48.00 C
ATOM 16 O2 C A 4 -8.315 107.668 3.129 0.60 48.33 O
ATOM 17 N3 C A 4 -9.748 107.397 1.411 0.60 44.19 N
ATOM 18 C4 C A 4 -10.958 107.017 1.010 0.60 44.03 C
ATOM 19 N4 C A 4 -11.216 107.058 -0.304 0.60 41.63 N
ATOM 20 C5 C A 4 -11.959 106.568 1.934 0.60 44.19 C
ATOM 21 C6 C A 4 -11.629 106.538 3.239 0.60 46.35 C
ATOM 22 P A A 5 -9.304 107.011 9.552 0.60 66.70 P
ATOM 23 OP1 A A 5 -10.247 105.901 9.887 0.60 67.93 O
ATOM 24 OP2 A A 5 -9.340 108.245 10.403 0.60 67.74 O
ATOM 25 O5' A A 5 -7.807 106.471 9.668 0.60 65.54 O
TER
ATOM 1 O3' A B 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 2 P U B 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 3 OP1 U B 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 4 OP2 U B 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 5 O5' U B 3 -15.027 106.272 1.492 0.60 65.41 O
ATOM 6 C5' U B 3 -15.923 107.215 2.091 0.60 69.35 C
ATOM 7 C4' U B 3 -16.419 106.640 3.380 0.60 71.82 C
ATOM 8 O4' U B 3 -17.230 105.476 3.060 0.60 74.34 O
ATOM 9 C3' U B 3 -15.305 106.136 4.292 0.60 73.77 C
ATOM 10 O3' U B 3 -15.713 106.292 5.637 0.60 74.30 O
ATOM 11 C2' U B 3 -15.224 104.653 3.947 0.60 75.23 C
ATOM 12 O2' U B 3 -14.724 103.845 4.991 0.60 75.26 O
ATOM 13 C1' U B 3 -16.691 104.332 3.690 0.60 77.64 C
ATOM 14 N1 U B 3 -16.943 103.167 2.837 0.60 83.08 N
ATOM 15 C2 U B 3 -17.843 102.210 3.317 0.60 85.52 C
ATOM 16 O2 U B 3 -18.393 102.305 4.401 0.60 86.59 O
ATOM 17 N3 U B 3 -18.067 101.146 2.480 0.60 88.25 N
ATOM 18 C4 U B 3 -17.482 100.926 1.239 0.60 88.92 C
ATOM 19 O4 U B 3 -17.773 99.915 0.588 0.60 90.17 O
ATOM 20 C5 U B 3 -16.561 101.954 0.817 0.60 87.09 C
ATOM 21 C6 U B 3 -16.330 103.016 1.609 0.60 84.36 C
ATOM 22 P C B 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 23 OP1 C B 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 24 OP2 C B 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 25 O5' C B 4 -13.337 106.947 6.322 0.60 72.94 O
TER
Atoms:
C2: (-9.431,107.348,2.724)
OP1: (-15.197,106.781,8.010)
OP2: (-15.210,108.665,6.261)
C4: (-10.958,107.017,1.010)
O5': (-13.337,106.947,6.322)
C3': (-10.653,107.486,7.316)
C1': (-10.007,106.866,5.093)
O4': (-10.668,105.751,5.653)
C5': (-12.656,105.889,7.037)
P: (-14.881,107.257,6.624)
O2: (-8.315,107.668,3.129)
C4': (-11.152,106.078,6.990)
C2': (-10.409,108.094,5.925)
O2': (-9.358,109.054,5.943)
N1: (-10.380,106.915,3.657)
N3: (-9.748,107.397,1.411)
N4: (-11.216,107.058,-0.304)
C6: (-11.629,106.538,3.239)
C5: (-11.959,106.568,1.934)
O3': (-9.386,107.420,7.985)
OP1: (-15.197,106.781,8.010)
OP2: (-15.210,108.665,6.261)
C4: (-10.958,107.017,1.010)
O5': (-13.337,106.947,6.322)
C3': (-10.653,107.486,7.316)
C1': (-10.007,106.866,5.093)
O4': (-10.668,105.751,5.653)
C5': (-12.656,105.889,7.037)
P: (-14.881,107.257,6.624)
O2: (-8.315,107.668,3.129)
C4': (-11.152,106.078,6.990)
C2': (-10.409,108.094,5.925)
O2': (-9.358,109.054,5.943)
N1: (-10.380,106.915,3.657)
N3: (-9.748,107.397,1.411)
N4: (-11.216,107.058,-0.304)
C6: (-11.629,106.538,3.239)
C5: (-11.959,106.568,1.934)
O3': (-9.386,107.420,7.985)
C4: (-17.482,100.926,1.239)
N3: (-18.067,101.146,2.480)
OP1: (-16.318,106.250,-0.670)
OP2: (-13.871,106.983,-0.591)
C2: (-17.843,102.210,3.317)
C1': (-16.691,104.332,3.690)
C3': (-15.305,106.136,4.292)
O5': (-15.027,106.272,1.492)
O4': (-17.230,105.476,3.060)
C5': (-15.923,107.215,2.091)
P: (-14.973,106.092,-0.088)
C4': (-16.419,106.640,3.380)
C2': (-15.224,104.653,3.947)
O2': (-14.724,103.845,4.991)
N1: (-16.943,103.167,2.837)
O4: (-17.773,99.915,0.588)
O2: (-18.393,102.305,4.401)
C6: (-16.330,103.016,1.609)
C5: (-16.561,101.954,0.817)
O3': (-15.713,106.292,5.637)
N3: (-18.067,101.146,2.480)
OP1: (-16.318,106.250,-0.670)
OP2: (-13.871,106.983,-0.591)
C2: (-17.843,102.210,3.317)
C1': (-16.691,104.332,3.690)
C3': (-15.305,106.136,4.292)
O5': (-15.027,106.272,1.492)
O4': (-17.230,105.476,3.060)
C5': (-15.923,107.215,2.091)
P: (-14.973,106.092,-0.088)
C4': (-16.419,106.640,3.380)
C2': (-15.224,104.653,3.947)
O2': (-14.724,103.845,4.991)
N1: (-16.943,103.167,2.837)
O4: (-17.773,99.915,0.588)
O2: (-18.393,102.305,4.401)
C6: (-16.330,103.016,1.609)
C5: (-16.561,101.954,0.817)
O3': (-15.713,106.292,5.637)
Image (generated by PyMOL):