Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 45.080 105.563 117.215 1.00 43.82 O
ATOM 2 P C A1088 45.092 105.891 118.786 1.00 48.54 P
ATOM 3 OP1 C A1088 44.466 107.230 118.968 1.00 46.51 O
ATOM 4 OP2 C A1088 46.472 105.650 119.296 1.00 47.72 O
ATOM 5 O5' C A1088 44.140 104.772 119.414 1.00 47.87 O
ATOM 6 C5' C A1088 42.809 105.086 119.855 1.00 46.37 C
ATOM 7 C4' C A1088 42.172 103.878 120.494 1.00 47.51 C
ATOM 8 O4' C A1088 41.956 102.851 119.496 1.00 46.37 O
ATOM 9 C3' C A1088 42.993 103.174 121.559 1.00 49.53 C
ATOM 10 O3' C A1088 42.856 103.802 122.820 1.00 54.07 O
ATOM 11 C2' C A1088 42.351 101.797 121.594 1.00 48.89 C
ATOM 12 O2' C A1088 41.176 101.785 122.379 1.00 48.22 O
ATOM 13 C1' C A1088 42.021 101.576 120.113 1.00 46.13 C
ATOM 14 N1 C A1088 43.020 100.752 119.406 1.00 45.03 N
ATOM 15 C2 C A1088 43.089 99.385 119.699 1.00 46.88 C
ATOM 16 O2 C A1088 42.293 98.902 120.519 1.00 48.85 O
ATOM 17 N3 C A1088 44.018 98.621 119.081 1.00 47.47 N
ATOM 18 C4 C A1088 44.853 99.168 118.199 1.00 45.70 C
ATOM 19 N4 C A1088 45.764 98.374 117.631 1.00 43.60 N
ATOM 20 C5 C A1088 44.794 100.552 117.865 1.00 44.58 C
ATOM 21 C6 C A1088 43.872 101.301 118.488 1.00 43.95 C
ATOM 22 P U A1089 44.105 104.567 123.471 1.00 58.01 P
ATOM 23 OP1 U A1089 43.728 104.893 124.870 1.00 56.63 O
ATOM 24 OP2 U A1089 44.535 105.654 122.547 1.00 57.99 O
ATOM 25 O5' U A1089 45.253 103.476 123.510 1.00 59.57 O
TER
ATOM 1 O3' C B1086 49.684 101.362 115.003 1.00 41.29 O
ATOM 2 P U B1087 48.466 101.102 116.021 1.00 42.75 P
ATOM 3 OP1 U B1087 49.004 101.102 117.405 1.00 42.83 O
ATOM 4 OP2 U B1087 47.705 99.924 115.527 1.00 42.02 O
ATOM 5 O5' U B1087 47.552 102.388 115.871 1.00 40.88 O
ATOM 6 C5' U B1087 48.066 103.681 116.186 1.00 41.17 C
ATOM 7 C4' U B1087 46.987 104.712 116.030 1.00 41.93 C
ATOM 8 O4' U B1087 46.652 104.847 114.617 1.00 42.29 O
ATOM 9 C3' U B1087 45.684 104.368 116.745 1.00 41.69 C
ATOM 10 O3' U B1087 45.080 105.563 117.215 1.00 43.82 O
ATOM 11 C2' U B1087 44.846 103.774 115.620 1.00 41.67 C
ATOM 12 O2' U B1087 43.461 103.857 115.861 1.00 42.03 O
ATOM 13 C1' U B1087 45.262 104.672 114.461 1.00 41.85 C
ATOM 14 N1 U B1087 44.978 104.212 113.092 1.00 41.36 N
ATOM 15 C2 U B1087 44.423 105.142 112.224 1.00 41.90 C
ATOM 16 O2 U B1087 44.170 106.291 112.555 1.00 42.52 O
ATOM 17 N3 U B1087 44.174 104.680 110.957 1.00 40.77 N
ATOM 18 C4 U B1087 44.410 103.415 110.473 1.00 41.70 C
ATOM 19 O4 U B1087 44.112 103.152 109.303 1.00 42.29 O
ATOM 20 C5 U B1087 44.985 102.507 111.427 1.00 41.85 C
ATOM 21 C6 U B1087 45.244 102.928 112.673 1.00 41.56 C
ATOM 22 P C B1088 45.092 105.891 118.786 1.00 48.54 P
ATOM 23 OP1 C B1088 44.466 107.230 118.968 1.00 46.51 O
ATOM 24 OP2 C B1088 46.472 105.650 119.296 1.00 47.72 O
ATOM 25 O5' C B1088 44.140 104.772 119.414 1.00 47.87 O
TER
ATOM 2 P C A1088 45.092 105.891 118.786 1.00 48.54 P
ATOM 3 OP1 C A1088 44.466 107.230 118.968 1.00 46.51 O
ATOM 4 OP2 C A1088 46.472 105.650 119.296 1.00 47.72 O
ATOM 5 O5' C A1088 44.140 104.772 119.414 1.00 47.87 O
ATOM 6 C5' C A1088 42.809 105.086 119.855 1.00 46.37 C
ATOM 7 C4' C A1088 42.172 103.878 120.494 1.00 47.51 C
ATOM 8 O4' C A1088 41.956 102.851 119.496 1.00 46.37 O
ATOM 9 C3' C A1088 42.993 103.174 121.559 1.00 49.53 C
ATOM 10 O3' C A1088 42.856 103.802 122.820 1.00 54.07 O
ATOM 11 C2' C A1088 42.351 101.797 121.594 1.00 48.89 C
ATOM 12 O2' C A1088 41.176 101.785 122.379 1.00 48.22 O
ATOM 13 C1' C A1088 42.021 101.576 120.113 1.00 46.13 C
ATOM 14 N1 C A1088 43.020 100.752 119.406 1.00 45.03 N
ATOM 15 C2 C A1088 43.089 99.385 119.699 1.00 46.88 C
ATOM 16 O2 C A1088 42.293 98.902 120.519 1.00 48.85 O
ATOM 17 N3 C A1088 44.018 98.621 119.081 1.00 47.47 N
ATOM 18 C4 C A1088 44.853 99.168 118.199 1.00 45.70 C
ATOM 19 N4 C A1088 45.764 98.374 117.631 1.00 43.60 N
ATOM 20 C5 C A1088 44.794 100.552 117.865 1.00 44.58 C
ATOM 21 C6 C A1088 43.872 101.301 118.488 1.00 43.95 C
ATOM 22 P U A1089 44.105 104.567 123.471 1.00 58.01 P
ATOM 23 OP1 U A1089 43.728 104.893 124.870 1.00 56.63 O
ATOM 24 OP2 U A1089 44.535 105.654 122.547 1.00 57.99 O
ATOM 25 O5' U A1089 45.253 103.476 123.510 1.00 59.57 O
TER
ATOM 1 O3' C B1086 49.684 101.362 115.003 1.00 41.29 O
ATOM 2 P U B1087 48.466 101.102 116.021 1.00 42.75 P
ATOM 3 OP1 U B1087 49.004 101.102 117.405 1.00 42.83 O
ATOM 4 OP2 U B1087 47.705 99.924 115.527 1.00 42.02 O
ATOM 5 O5' U B1087 47.552 102.388 115.871 1.00 40.88 O
ATOM 6 C5' U B1087 48.066 103.681 116.186 1.00 41.17 C
ATOM 7 C4' U B1087 46.987 104.712 116.030 1.00 41.93 C
ATOM 8 O4' U B1087 46.652 104.847 114.617 1.00 42.29 O
ATOM 9 C3' U B1087 45.684 104.368 116.745 1.00 41.69 C
ATOM 10 O3' U B1087 45.080 105.563 117.215 1.00 43.82 O
ATOM 11 C2' U B1087 44.846 103.774 115.620 1.00 41.67 C
ATOM 12 O2' U B1087 43.461 103.857 115.861 1.00 42.03 O
ATOM 13 C1' U B1087 45.262 104.672 114.461 1.00 41.85 C
ATOM 14 N1 U B1087 44.978 104.212 113.092 1.00 41.36 N
ATOM 15 C2 U B1087 44.423 105.142 112.224 1.00 41.90 C
ATOM 16 O2 U B1087 44.170 106.291 112.555 1.00 42.52 O
ATOM 17 N3 U B1087 44.174 104.680 110.957 1.00 40.77 N
ATOM 18 C4 U B1087 44.410 103.415 110.473 1.00 41.70 C
ATOM 19 O4 U B1087 44.112 103.152 109.303 1.00 42.29 O
ATOM 20 C5 U B1087 44.985 102.507 111.427 1.00 41.85 C
ATOM 21 C6 U B1087 45.244 102.928 112.673 1.00 41.56 C
ATOM 22 P C B1088 45.092 105.891 118.786 1.00 48.54 P
ATOM 23 OP1 C B1088 44.466 107.230 118.968 1.00 46.51 O
ATOM 24 OP2 C B1088 46.472 105.650 119.296 1.00 47.72 O
ATOM 25 O5' C B1088 44.140 104.772 119.414 1.00 47.87 O
TER
Atoms:
C2: (43.089,99.385,119.699)
OP1: (44.466,107.230,118.968)
OP2: (46.472,105.650,119.296)
C4: (44.853,99.168,118.199)
O5': (44.140,104.772,119.414)
C3': (42.993,103.174,121.559)
C1': (42.021,101.576,120.113)
O4': (41.956,102.851,119.496)
C5': (42.809,105.086,119.855)
P: (45.092,105.891,118.786)
O2: (42.293,98.902,120.519)
C4': (42.172,103.878,120.494)
C2': (42.351,101.797,121.594)
O2': (41.176,101.785,122.379)
N1: (43.020,100.752,119.406)
N3: (44.018,98.621,119.081)
N4: (45.764,98.374,117.631)
C6: (43.872,101.301,118.488)
C5: (44.794,100.552,117.865)
O3': (42.856,103.802,122.820)
OP1: (44.466,107.230,118.968)
OP2: (46.472,105.650,119.296)
C4: (44.853,99.168,118.199)
O5': (44.140,104.772,119.414)
C3': (42.993,103.174,121.559)
C1': (42.021,101.576,120.113)
O4': (41.956,102.851,119.496)
C5': (42.809,105.086,119.855)
P: (45.092,105.891,118.786)
O2: (42.293,98.902,120.519)
C4': (42.172,103.878,120.494)
C2': (42.351,101.797,121.594)
O2': (41.176,101.785,122.379)
N1: (43.020,100.752,119.406)
N3: (44.018,98.621,119.081)
N4: (45.764,98.374,117.631)
C6: (43.872,101.301,118.488)
C5: (44.794,100.552,117.865)
O3': (42.856,103.802,122.820)
C4: (44.410,103.415,110.473)
N3: (44.174,104.680,110.957)
OP1: (49.004,101.102,117.405)
OP2: (47.705,99.924,115.527)
C2: (44.423,105.142,112.224)
C1': (45.262,104.672,114.461)
C3': (45.684,104.368,116.745)
O5': (47.552,102.388,115.871)
O4': (46.652,104.847,114.617)
C5': (48.066,103.681,116.186)
P: (48.466,101.102,116.021)
C4': (46.987,104.712,116.030)
C2': (44.846,103.774,115.620)
O2': (43.461,103.857,115.861)
N1: (44.978,104.212,113.092)
O4: (44.112,103.152,109.303)
O2: (44.170,106.291,112.555)
C6: (45.244,102.928,112.673)
C5: (44.985,102.507,111.427)
O3': (45.080,105.563,117.215)
N3: (44.174,104.680,110.957)
OP1: (49.004,101.102,117.405)
OP2: (47.705,99.924,115.527)
C2: (44.423,105.142,112.224)
C1': (45.262,104.672,114.461)
C3': (45.684,104.368,116.745)
O5': (47.552,102.388,115.871)
O4': (46.652,104.847,114.617)
C5': (48.066,103.681,116.186)
P: (48.466,101.102,116.021)
C4': (46.987,104.712,116.030)
C2': (44.846,103.774,115.620)
O2': (43.461,103.857,115.861)
N1: (44.978,104.212,113.092)
O4: (44.112,103.152,109.303)
O2: (44.170,106.291,112.555)
C6: (45.244,102.928,112.673)
C5: (44.985,102.507,111.427)
O3': (45.080,105.563,117.215)
Image (generated by PyMOL):