Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 45.178 105.853 117.624 1.00 50.17 O
ATOM 2 P C A1088 45.350 106.199 119.178 1.00 54.03 P
ATOM 3 OP1 C A1088 44.785 107.557 119.434 1.00 51.86 O
ATOM 4 OP2 C A1088 46.775 105.921 119.521 1.00 52.56 O
ATOM 5 O5' C A1088 44.424 105.122 119.906 1.00 53.09 O
ATOM 6 C5' C A1088 43.082 105.453 120.306 1.00 53.74 C
ATOM 7 C4' C A1088 42.394 104.245 120.890 1.00 54.67 C
ATOM 8 O4' C A1088 42.177 103.251 119.856 1.00 53.26 O
ATOM 9 C3' C A1088 43.166 103.498 121.960 1.00 55.54 C
ATOM 10 O3' C A1088 43.003 104.108 123.228 1.00 60.57 O
ATOM 11 C2' C A1088 42.500 102.130 121.934 1.00 54.56 C
ATOM 12 O2' C A1088 41.290 102.126 122.664 1.00 53.93 O
ATOM 13 C1' C A1088 42.219 101.956 120.435 1.00 52.27 C
ATOM 14 N1 C A1088 43.225 101.136 119.722 1.00 50.32 N
ATOM 15 C2 C A1088 43.236 99.755 119.940 1.00 49.10 C
ATOM 16 O2 C A1088 42.385 99.259 120.685 1.00 50.53 O
ATOM 17 N3 C A1088 44.169 98.996 119.332 1.00 48.32 N
ATOM 18 C4 C A1088 45.068 99.558 118.528 1.00 48.10 C
ATOM 19 N4 C A1088 45.986 98.765 117.977 1.00 46.93 N
ATOM 20 C5 C A1088 45.068 100.956 118.261 1.00 48.92 C
ATOM 21 C6 C A1088 44.138 101.703 118.874 1.00 50.04 C
ATOM 22 P U A1089 44.216 104.929 123.879 1.00 63.45 P
ATOM 23 OP1 U A1089 43.837 105.277 125.272 1.00 62.49 O
ATOM 24 OP2 U A1089 44.618 105.999 122.936 1.00 64.81 O
ATOM 25 O5' U A1089 45.390 103.872 123.951 1.00 65.34 O
TER
ATOM 1 O3' C B1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 2 P U B1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 3 OP1 U B1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 4 OP2 U B1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 5 O5' U B1087 47.692 102.654 116.304 1.00 46.78 O
ATOM 6 C5' U B1087 48.170 103.950 116.656 1.00 47.49 C
ATOM 7 C4' U B1087 47.084 104.978 116.477 1.00 49.63 C
ATOM 8 O4' U B1087 46.829 105.183 115.057 1.00 50.76 O
ATOM 9 C3' U B1087 45.737 104.658 117.117 1.00 50.03 C
ATOM 10 O3' U B1087 45.178 105.853 117.624 1.00 50.17 O
ATOM 11 C2' U B1087 44.910 104.169 115.933 1.00 51.44 C
ATOM 12 O2' U B1087 43.529 104.381 116.111 1.00 52.45 O
ATOM 13 C1' U B1087 45.443 105.057 114.811 1.00 51.98 C
ATOM 14 N1 U B1087 45.251 104.543 113.445 1.00 52.63 N
ATOM 15 C2 U B1087 44.702 105.405 112.513 1.00 53.85 C
ATOM 16 O2 U B1087 44.364 106.547 112.781 1.00 56.94 O
ATOM 17 N3 U B1087 44.563 104.882 111.252 1.00 51.91 N
ATOM 18 C4 U B1087 44.902 103.616 110.839 1.00 52.49 C
ATOM 19 O4 U B1087 44.774 103.317 109.655 1.00 52.85 O
ATOM 20 C5 U B1087 45.451 102.781 111.859 1.00 53.49 C
ATOM 21 C6 U B1087 45.605 103.261 113.095 1.00 53.43 C
ATOM 22 P C B1088 45.350 106.199 119.178 1.00 54.03 P
ATOM 23 OP1 C B1088 44.785 107.557 119.434 1.00 51.86 O
ATOM 24 OP2 C B1088 46.775 105.921 119.521 1.00 52.56 O
ATOM 25 O5' C B1088 44.424 105.122 119.906 1.00 53.09 O
TER
ATOM 2 P C A1088 45.350 106.199 119.178 1.00 54.03 P
ATOM 3 OP1 C A1088 44.785 107.557 119.434 1.00 51.86 O
ATOM 4 OP2 C A1088 46.775 105.921 119.521 1.00 52.56 O
ATOM 5 O5' C A1088 44.424 105.122 119.906 1.00 53.09 O
ATOM 6 C5' C A1088 43.082 105.453 120.306 1.00 53.74 C
ATOM 7 C4' C A1088 42.394 104.245 120.890 1.00 54.67 C
ATOM 8 O4' C A1088 42.177 103.251 119.856 1.00 53.26 O
ATOM 9 C3' C A1088 43.166 103.498 121.960 1.00 55.54 C
ATOM 10 O3' C A1088 43.003 104.108 123.228 1.00 60.57 O
ATOM 11 C2' C A1088 42.500 102.130 121.934 1.00 54.56 C
ATOM 12 O2' C A1088 41.290 102.126 122.664 1.00 53.93 O
ATOM 13 C1' C A1088 42.219 101.956 120.435 1.00 52.27 C
ATOM 14 N1 C A1088 43.225 101.136 119.722 1.00 50.32 N
ATOM 15 C2 C A1088 43.236 99.755 119.940 1.00 49.10 C
ATOM 16 O2 C A1088 42.385 99.259 120.685 1.00 50.53 O
ATOM 17 N3 C A1088 44.169 98.996 119.332 1.00 48.32 N
ATOM 18 C4 C A1088 45.068 99.558 118.528 1.00 48.10 C
ATOM 19 N4 C A1088 45.986 98.765 117.977 1.00 46.93 N
ATOM 20 C5 C A1088 45.068 100.956 118.261 1.00 48.92 C
ATOM 21 C6 C A1088 44.138 101.703 118.874 1.00 50.04 C
ATOM 22 P U A1089 44.216 104.929 123.879 1.00 63.45 P
ATOM 23 OP1 U A1089 43.837 105.277 125.272 1.00 62.49 O
ATOM 24 OP2 U A1089 44.618 105.999 122.936 1.00 64.81 O
ATOM 25 O5' U A1089 45.390 103.872 123.951 1.00 65.34 O
TER
ATOM 1 O3' C B1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 2 P U B1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 3 OP1 U B1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 4 OP2 U B1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 5 O5' U B1087 47.692 102.654 116.304 1.00 46.78 O
ATOM 6 C5' U B1087 48.170 103.950 116.656 1.00 47.49 C
ATOM 7 C4' U B1087 47.084 104.978 116.477 1.00 49.63 C
ATOM 8 O4' U B1087 46.829 105.183 115.057 1.00 50.76 O
ATOM 9 C3' U B1087 45.737 104.658 117.117 1.00 50.03 C
ATOM 10 O3' U B1087 45.178 105.853 117.624 1.00 50.17 O
ATOM 11 C2' U B1087 44.910 104.169 115.933 1.00 51.44 C
ATOM 12 O2' U B1087 43.529 104.381 116.111 1.00 52.45 O
ATOM 13 C1' U B1087 45.443 105.057 114.811 1.00 51.98 C
ATOM 14 N1 U B1087 45.251 104.543 113.445 1.00 52.63 N
ATOM 15 C2 U B1087 44.702 105.405 112.513 1.00 53.85 C
ATOM 16 O2 U B1087 44.364 106.547 112.781 1.00 56.94 O
ATOM 17 N3 U B1087 44.563 104.882 111.252 1.00 51.91 N
ATOM 18 C4 U B1087 44.902 103.616 110.839 1.00 52.49 C
ATOM 19 O4 U B1087 44.774 103.317 109.655 1.00 52.85 O
ATOM 20 C5 U B1087 45.451 102.781 111.859 1.00 53.49 C
ATOM 21 C6 U B1087 45.605 103.261 113.095 1.00 53.43 C
ATOM 22 P C B1088 45.350 106.199 119.178 1.00 54.03 P
ATOM 23 OP1 C B1088 44.785 107.557 119.434 1.00 51.86 O
ATOM 24 OP2 C B1088 46.775 105.921 119.521 1.00 52.56 O
ATOM 25 O5' C B1088 44.424 105.122 119.906 1.00 53.09 O
TER
Atoms:
C2: (43.236,99.755,119.940)
OP1: (44.785,107.557,119.434)
OP2: (46.775,105.921,119.521)
C4: (45.068,99.558,118.528)
O5': (44.424,105.122,119.906)
C3': (43.166,103.498,121.960)
C1': (42.219,101.956,120.435)
O4': (42.177,103.251,119.856)
C5': (43.082,105.453,120.306)
P: (45.350,106.199,119.178)
O2: (42.385,99.259,120.685)
C4': (42.394,104.245,120.890)
C2': (42.500,102.130,121.934)
O2': (41.290,102.126,122.664)
N1: (43.225,101.136,119.722)
N3: (44.169,98.996,119.332)
N4: (45.986,98.765,117.977)
C6: (44.138,101.703,118.874)
C5: (45.068,100.956,118.261)
O3': (43.003,104.108,123.228)
OP1: (44.785,107.557,119.434)
OP2: (46.775,105.921,119.521)
C4: (45.068,99.558,118.528)
O5': (44.424,105.122,119.906)
C3': (43.166,103.498,121.960)
C1': (42.219,101.956,120.435)
O4': (42.177,103.251,119.856)
C5': (43.082,105.453,120.306)
P: (45.350,106.199,119.178)
O2: (42.385,99.259,120.685)
C4': (42.394,104.245,120.890)
C2': (42.500,102.130,121.934)
O2': (41.290,102.126,122.664)
N1: (43.225,101.136,119.722)
N3: (44.169,98.996,119.332)
N4: (45.986,98.765,117.977)
C6: (44.138,101.703,118.874)
C5: (45.068,100.956,118.261)
O3': (43.003,104.108,123.228)
C4: (44.902,103.616,110.839)
N3: (44.563,104.882,111.252)
OP1: (49.207,101.395,117.803)
OP2: (47.907,100.178,115.959)
C2: (44.702,105.405,112.513)
C1': (45.443,105.057,114.811)
C3': (45.737,104.658,117.117)
O5': (47.692,102.654,116.304)
O4': (46.829,105.183,115.057)
C5': (48.170,103.950,116.656)
P: (48.632,101.382,116.440)
C4': (47.084,104.978,116.477)
C2': (44.910,104.169,115.933)
O2': (43.529,104.381,116.111)
N1: (45.251,104.543,113.445)
O4: (44.774,103.317,109.655)
O2: (44.364,106.547,112.781)
C6: (45.605,103.261,113.095)
C5: (45.451,102.781,111.859)
O3': (45.178,105.853,117.624)
N3: (44.563,104.882,111.252)
OP1: (49.207,101.395,117.803)
OP2: (47.907,100.178,115.959)
C2: (44.702,105.405,112.513)
C1': (45.443,105.057,114.811)
C3': (45.737,104.658,117.117)
O5': (47.692,102.654,116.304)
O4': (46.829,105.183,115.057)
C5': (48.170,103.950,116.656)
P: (48.632,101.382,116.440)
C4': (47.084,104.978,116.477)
C2': (44.910,104.169,115.933)
O2': (43.529,104.381,116.111)
N1: (45.251,104.543,113.445)
O4: (44.774,103.317,109.655)
O2: (44.364,106.547,112.781)
C6: (45.605,103.261,113.095)
C5: (45.451,102.781,111.859)
O3': (45.178,105.853,117.624)
Image (generated by PyMOL):