Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01085:01084
Extra
PDB:
ATOM 1 O3' U A1084 42.461 94.270 114.657 1.00 46.07 O
ATOM 2 P C A1085 43.837 94.856 115.229 1.00 48.35 P
ATOM 3 OP1 C A1085 44.888 93.900 114.788 1.00 46.08 O
ATOM 4 OP2 C A1085 43.679 95.157 116.677 1.00 46.82 O
ATOM 5 O5' C A1085 44.010 96.231 114.443 1.00 47.24 O
ATOM 6 C5' C A1085 43.998 96.252 113.003 1.00 48.34 C
ATOM 7 C4' C A1085 44.079 97.669 112.492 1.00 47.68 C
ATOM 8 O4' C A1085 42.940 98.401 113.013 1.00 47.62 O
ATOM 9 C3' C A1085 45.319 98.462 112.889 1.00 47.49 C
ATOM 10 O3' C A1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 11 C2' C A1085 44.844 99.209 114.132 1.00 47.81 C
ATOM 12 O2' C A1085 45.543 100.412 114.368 1.00 49.07 O
ATOM 13 C1' C A1085 43.387 99.498 113.780 1.00 47.51 C
ATOM 14 N1 C A1085 42.492 99.626 114.942 1.00 45.70 N
ATOM 15 C2 C A1085 41.763 100.809 115.112 1.00 45.14 C
ATOM 16 O2 C A1085 41.919 101.737 114.312 1.00 44.45 O
ATOM 17 N3 C A1085 40.911 100.914 116.150 1.00 47.06 N
ATOM 18 C4 C A1085 40.780 99.904 117.012 1.00 48.14 C
ATOM 19 N4 C A1085 39.924 100.057 118.025 1.00 49.35 N
ATOM 20 C5 C A1085 41.522 98.695 116.875 1.00 47.58 C
ATOM 21 C6 C A1085 42.358 98.600 115.836 1.00 46.77 C
ATOM 22 P C A1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 23 OP1 C A1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 24 OP2 C A1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 25 O5' C A1086 48.037 100.207 111.888 1.00 46.14 O
TER
ATOM 1 O3' A B1083 38.373 94.965 119.081 1.00 41.00 O
ATOM 2 P U B1084 39.760 95.751 118.937 1.00 40.93 P
ATOM 3 OP1 U B1084 40.750 95.110 119.840 1.00 39.93 O
ATOM 4 OP2 U B1084 39.470 97.193 119.073 1.00 40.54 O
ATOM 5 O5' U B1084 40.175 95.482 117.428 1.00 40.63 O
ATOM 6 C5' U B1084 40.233 94.140 116.924 1.00 42.01 C
ATOM 7 C4' U B1084 40.203 94.151 115.423 1.00 42.95 C
ATOM 8 O4' U B1084 38.950 94.705 114.969 1.00 42.87 O
ATOM 9 C3' U B1084 41.262 95.024 114.781 1.00 43.93 C
ATOM 10 O3' U B1084 42.461 94.270 114.657 1.00 46.07 O
ATOM 11 C2' U B1084 40.649 95.334 113.424 1.00 43.66 C
ATOM 12 O2' U B1084 40.827 94.272 112.508 1.00 46.32 O
ATOM 13 C1' U B1084 39.160 95.423 113.772 1.00 42.87 C
ATOM 14 N1 U B1084 38.621 96.777 113.942 1.00 42.18 N
ATOM 15 C2 U B1084 38.184 97.444 112.815 1.00 42.74 C
ATOM 16 O2 U B1084 38.256 96.972 111.694 1.00 45.11 O
ATOM 17 N3 U B1084 37.654 98.686 113.046 1.00 42.61 N
ATOM 18 C4 U B1084 37.520 99.313 114.261 1.00 43.84 C
ATOM 19 O4 U B1084 36.944 100.400 114.325 1.00 45.13 O
ATOM 20 C5 U B1084 38.015 98.565 115.370 1.00 44.53 C
ATOM 21 C6 U B1084 38.537 97.354 115.176 1.00 42.49 C
ATOM 22 P C B1085 43.837 94.856 115.229 1.00 48.35 P
ATOM 23 OP1 C B1085 44.888 93.900 114.788 1.00 46.08 O
ATOM 24 OP2 C B1085 43.679 95.157 116.677 1.00 46.82 O
ATOM 25 O5' C B1085 44.010 96.231 114.443 1.00 47.24 O
TER
ATOM 2 P C A1085 43.837 94.856 115.229 1.00 48.35 P
ATOM 3 OP1 C A1085 44.888 93.900 114.788 1.00 46.08 O
ATOM 4 OP2 C A1085 43.679 95.157 116.677 1.00 46.82 O
ATOM 5 O5' C A1085 44.010 96.231 114.443 1.00 47.24 O
ATOM 6 C5' C A1085 43.998 96.252 113.003 1.00 48.34 C
ATOM 7 C4' C A1085 44.079 97.669 112.492 1.00 47.68 C
ATOM 8 O4' C A1085 42.940 98.401 113.013 1.00 47.62 O
ATOM 9 C3' C A1085 45.319 98.462 112.889 1.00 47.49 C
ATOM 10 O3' C A1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 11 C2' C A1085 44.844 99.209 114.132 1.00 47.81 C
ATOM 12 O2' C A1085 45.543 100.412 114.368 1.00 49.07 O
ATOM 13 C1' C A1085 43.387 99.498 113.780 1.00 47.51 C
ATOM 14 N1 C A1085 42.492 99.626 114.942 1.00 45.70 N
ATOM 15 C2 C A1085 41.763 100.809 115.112 1.00 45.14 C
ATOM 16 O2 C A1085 41.919 101.737 114.312 1.00 44.45 O
ATOM 17 N3 C A1085 40.911 100.914 116.150 1.00 47.06 N
ATOM 18 C4 C A1085 40.780 99.904 117.012 1.00 48.14 C
ATOM 19 N4 C A1085 39.924 100.057 118.025 1.00 49.35 N
ATOM 20 C5 C A1085 41.522 98.695 116.875 1.00 47.58 C
ATOM 21 C6 C A1085 42.358 98.600 115.836 1.00 46.77 C
ATOM 22 P C A1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 23 OP1 C A1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 24 OP2 C A1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 25 O5' C A1086 48.037 100.207 111.888 1.00 46.14 O
TER
ATOM 1 O3' A B1083 38.373 94.965 119.081 1.00 41.00 O
ATOM 2 P U B1084 39.760 95.751 118.937 1.00 40.93 P
ATOM 3 OP1 U B1084 40.750 95.110 119.840 1.00 39.93 O
ATOM 4 OP2 U B1084 39.470 97.193 119.073 1.00 40.54 O
ATOM 5 O5' U B1084 40.175 95.482 117.428 1.00 40.63 O
ATOM 6 C5' U B1084 40.233 94.140 116.924 1.00 42.01 C
ATOM 7 C4' U B1084 40.203 94.151 115.423 1.00 42.95 C
ATOM 8 O4' U B1084 38.950 94.705 114.969 1.00 42.87 O
ATOM 9 C3' U B1084 41.262 95.024 114.781 1.00 43.93 C
ATOM 10 O3' U B1084 42.461 94.270 114.657 1.00 46.07 O
ATOM 11 C2' U B1084 40.649 95.334 113.424 1.00 43.66 C
ATOM 12 O2' U B1084 40.827 94.272 112.508 1.00 46.32 O
ATOM 13 C1' U B1084 39.160 95.423 113.772 1.00 42.87 C
ATOM 14 N1 U B1084 38.621 96.777 113.942 1.00 42.18 N
ATOM 15 C2 U B1084 38.184 97.444 112.815 1.00 42.74 C
ATOM 16 O2 U B1084 38.256 96.972 111.694 1.00 45.11 O
ATOM 17 N3 U B1084 37.654 98.686 113.046 1.00 42.61 N
ATOM 18 C4 U B1084 37.520 99.313 114.261 1.00 43.84 C
ATOM 19 O4 U B1084 36.944 100.400 114.325 1.00 45.13 O
ATOM 20 C5 U B1084 38.015 98.565 115.370 1.00 44.53 C
ATOM 21 C6 U B1084 38.537 97.354 115.176 1.00 42.49 C
ATOM 22 P C B1085 43.837 94.856 115.229 1.00 48.35 P
ATOM 23 OP1 C B1085 44.888 93.900 114.788 1.00 46.08 O
ATOM 24 OP2 C B1085 43.679 95.157 116.677 1.00 46.82 O
ATOM 25 O5' C B1085 44.010 96.231 114.443 1.00 47.24 O
TER
Atoms:
C2: (41.763,100.809,115.112)
OP1: (44.888,93.900,114.788)
OP2: (43.679,95.157,116.677)
C4: (40.780,99.904,117.012)
O5': (44.010,96.231,114.443)
C3': (45.319,98.462,112.889)
C1': (43.387,99.498,113.780)
O4': (42.940,98.401,113.013)
C5': (43.998,96.252,113.003)
P: (43.837,94.856,115.229)
O2: (41.919,101.737,114.312)
C4': (44.079,97.669,112.492)
C2': (44.844,99.209,114.132)
O2': (45.543,100.412,114.368)
N1: (42.492,99.626,114.942)
N3: (40.911,100.914,116.150)
N4: (39.924,100.057,118.025)
C6: (42.358,98.600,115.836)
C5: (41.522,98.695,116.875)
O3': (45.671,99.356,111.833)
OP1: (44.888,93.900,114.788)
OP2: (43.679,95.157,116.677)
C4: (40.780,99.904,117.012)
O5': (44.010,96.231,114.443)
C3': (45.319,98.462,112.889)
C1': (43.387,99.498,113.780)
O4': (42.940,98.401,113.013)
C5': (43.998,96.252,113.003)
P: (43.837,94.856,115.229)
O2: (41.919,101.737,114.312)
C4': (44.079,97.669,112.492)
C2': (44.844,99.209,114.132)
O2': (45.543,100.412,114.368)
N1: (42.492,99.626,114.942)
N3: (40.911,100.914,116.150)
N4: (39.924,100.057,118.025)
C6: (42.358,98.600,115.836)
C5: (41.522,98.695,116.875)
O3': (45.671,99.356,111.833)
C4: (37.520,99.313,114.261)
N3: (37.654,98.686,113.046)
OP1: (40.750,95.110,119.840)
OP2: (39.470,97.193,119.073)
C2: (38.184,97.444,112.815)
C1': (39.160,95.423,113.772)
C3': (41.262,95.024,114.781)
O5': (40.175,95.482,117.428)
O4': (38.950,94.705,114.969)
C5': (40.233,94.140,116.924)
P: (39.760,95.751,118.937)
C4': (40.203,94.151,115.423)
C2': (40.649,95.334,113.424)
O2': (40.827,94.272,112.508)
N1: (38.621,96.777,113.942)
O4: (36.944,100.400,114.325)
O2: (38.256,96.972,111.694)
C6: (38.537,97.354,115.176)
C5: (38.015,98.565,115.370)
O3': (42.461,94.270,114.657)
N3: (37.654,98.686,113.046)
OP1: (40.750,95.110,119.840)
OP2: (39.470,97.193,119.073)
C2: (38.184,97.444,112.815)
C1': (39.160,95.423,113.772)
C3': (41.262,95.024,114.781)
O5': (40.175,95.482,117.428)
O4': (38.950,94.705,114.969)
C5': (40.233,94.140,116.924)
P: (39.760,95.751,118.937)
C4': (40.203,94.151,115.423)
C2': (40.649,95.334,113.424)
O2': (40.827,94.272,112.508)
N1: (38.621,96.777,113.942)
O4: (36.944,100.400,114.325)
O2: (38.256,96.972,111.694)
C6: (38.537,97.354,115.176)
C5: (38.015,98.565,115.370)
O3': (42.461,94.270,114.657)
Image (generated by PyMOL):