Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y27:X40:X11
Extra
PDB:
ATOM 1 O3' C A 39 5.969 -12.185 27.735 1.00 46.56 O
ATOM 2 P C A 40 5.439 -13.180 28.875 1.00 47.42 P
ATOM 3 OP1 C A 40 4.225 -13.853 28.353 1.00 46.80 O
ATOM 4 OP2 C A 40 5.379 -12.416 30.142 1.00 46.60 O
ATOM 5 O5' C A 40 6.561 -14.318 28.992 1.00 47.28 O
ATOM 6 C5' C A 40 7.873 -14.017 29.421 1.00 48.40 C
ATOM 7 C4' C A 40 8.890 -14.841 28.651 1.00 49.40 C
ATOM 8 O4' C A 40 9.084 -14.296 27.319 1.00 49.17 O
ATOM 9 C3' C A 40 10.278 -14.838 29.272 1.00 49.93 C
ATOM 10 O3' C A 40 10.369 -15.892 30.211 1.00 50.86 O
ATOM 11 C2' C A 40 11.192 -15.026 28.064 1.00 49.70 C
ATOM 12 O2' C A 40 11.279 -16.359 27.598 1.00 50.28 O
ATOM 13 C1' C A 40 10.468 -14.167 27.033 1.00 49.15 C
ATOM 14 N1 C A 40 10.887 -12.711 27.037 1.00 48.86 N
ATOM 15 C2 C A 40 12.187 -12.352 26.624 1.00 48.89 C
ATOM 16 O2 C A 40 12.987 -13.225 26.262 1.00 49.14 O
ATOM 17 N3 C A 40 12.545 -11.042 26.629 1.00 48.70 N
ATOM 18 C4 C A 40 11.675 -10.109 27.024 1.00 48.75 C
ATOM 19 N4 C A 40 12.081 -8.837 27.010 1.00 48.78 N
ATOM 20 C5 C A 40 10.351 -10.445 27.448 1.00 49.02 C
ATOM 21 C6 C A 40 10.004 -11.739 27.433 1.00 48.58 C
ATOM 22 P G A 41 10.844 -15.598 31.710 1.00 51.47 P
ATOM 23 OP1 G A 41 10.303 -16.696 32.547 1.00 51.50 O
ATOM 24 OP2 G A 41 10.566 -14.185 32.068 1.00 51.15 O
ATOM 25 O5' G A 41 12.426 -15.784 31.583 1.00 51.98 O
TER
ATOM 1 O3' A B 10 8.703 -7.640 25.544 1.00 50.04 O
ATOM 2 P U B 11 9.205 -6.763 26.778 1.00 49.72 P
ATOM 3 OP1 U B 11 10.653 -6.493 26.608 1.00 49.51 O
ATOM 4 OP2 U B 11 8.724 -7.422 28.011 1.00 50.12 O
ATOM 5 O5' U B 11 8.383 -5.409 26.585 1.00 50.26 O
ATOM 6 C5' U B 11 9.011 -4.174 26.250 1.00 50.30 C
ATOM 7 C4' U B 11 7.980 -3.254 25.627 1.00 50.58 C
ATOM 8 O4' U B 11 7.317 -3.921 24.516 1.00 50.31 O
ATOM 9 C3' U B 11 6.834 -2.905 26.558 1.00 50.64 C
ATOM 10 O3' U B 11 7.195 -1.869 27.447 1.00 51.70 O
ATOM 11 C2' U B 11 5.755 -2.493 25.561 1.00 50.45 C
ATOM 12 O2' U B 11 5.905 -1.180 25.045 1.00 50.38 O
ATOM 13 C1' U B 11 5.946 -3.559 24.480 1.00 49.87 C
ATOM 14 N1 U B 11 5.054 -4.768 24.683 1.00 49.74 N
ATOM 15 C2 U B 11 3.692 -4.647 24.454 1.00 49.48 C
ATOM 16 O2 U B 11 3.159 -3.619 24.086 1.00 49.71 O
ATOM 17 N3 U B 11 2.952 -5.787 24.667 1.00 49.48 N
ATOM 18 C4 U B 11 3.416 -7.024 25.076 1.00 49.62 C
ATOM 19 O4 U B 11 2.617 -7.946 25.225 1.00 49.21 O
ATOM 20 C5 U B 11 4.844 -7.088 25.295 1.00 49.77 C
ATOM 21 C6 U B 11 5.586 -5.984 25.096 1.00 50.11 C
ATOM 22 P C B 12 6.673 -1.905 28.963 1.00 52.73 P
ATOM 23 OP1 C B 12 7.216 -0.705 29.643 1.00 53.29 O
ATOM 24 OP2 C B 12 6.960 -3.243 29.519 1.00 52.84 O
ATOM 25 O5' C B 12 5.091 -1.713 28.817 1.00 53.93 O
TER
ATOM 2 P C A 40 5.439 -13.180 28.875 1.00 47.42 P
ATOM 3 OP1 C A 40 4.225 -13.853 28.353 1.00 46.80 O
ATOM 4 OP2 C A 40 5.379 -12.416 30.142 1.00 46.60 O
ATOM 5 O5' C A 40 6.561 -14.318 28.992 1.00 47.28 O
ATOM 6 C5' C A 40 7.873 -14.017 29.421 1.00 48.40 C
ATOM 7 C4' C A 40 8.890 -14.841 28.651 1.00 49.40 C
ATOM 8 O4' C A 40 9.084 -14.296 27.319 1.00 49.17 O
ATOM 9 C3' C A 40 10.278 -14.838 29.272 1.00 49.93 C
ATOM 10 O3' C A 40 10.369 -15.892 30.211 1.00 50.86 O
ATOM 11 C2' C A 40 11.192 -15.026 28.064 1.00 49.70 C
ATOM 12 O2' C A 40 11.279 -16.359 27.598 1.00 50.28 O
ATOM 13 C1' C A 40 10.468 -14.167 27.033 1.00 49.15 C
ATOM 14 N1 C A 40 10.887 -12.711 27.037 1.00 48.86 N
ATOM 15 C2 C A 40 12.187 -12.352 26.624 1.00 48.89 C
ATOM 16 O2 C A 40 12.987 -13.225 26.262 1.00 49.14 O
ATOM 17 N3 C A 40 12.545 -11.042 26.629 1.00 48.70 N
ATOM 18 C4 C A 40 11.675 -10.109 27.024 1.00 48.75 C
ATOM 19 N4 C A 40 12.081 -8.837 27.010 1.00 48.78 N
ATOM 20 C5 C A 40 10.351 -10.445 27.448 1.00 49.02 C
ATOM 21 C6 C A 40 10.004 -11.739 27.433 1.00 48.58 C
ATOM 22 P G A 41 10.844 -15.598 31.710 1.00 51.47 P
ATOM 23 OP1 G A 41 10.303 -16.696 32.547 1.00 51.50 O
ATOM 24 OP2 G A 41 10.566 -14.185 32.068 1.00 51.15 O
ATOM 25 O5' G A 41 12.426 -15.784 31.583 1.00 51.98 O
TER
ATOM 1 O3' A B 10 8.703 -7.640 25.544 1.00 50.04 O
ATOM 2 P U B 11 9.205 -6.763 26.778 1.00 49.72 P
ATOM 3 OP1 U B 11 10.653 -6.493 26.608 1.00 49.51 O
ATOM 4 OP2 U B 11 8.724 -7.422 28.011 1.00 50.12 O
ATOM 5 O5' U B 11 8.383 -5.409 26.585 1.00 50.26 O
ATOM 6 C5' U B 11 9.011 -4.174 26.250 1.00 50.30 C
ATOM 7 C4' U B 11 7.980 -3.254 25.627 1.00 50.58 C
ATOM 8 O4' U B 11 7.317 -3.921 24.516 1.00 50.31 O
ATOM 9 C3' U B 11 6.834 -2.905 26.558 1.00 50.64 C
ATOM 10 O3' U B 11 7.195 -1.869 27.447 1.00 51.70 O
ATOM 11 C2' U B 11 5.755 -2.493 25.561 1.00 50.45 C
ATOM 12 O2' U B 11 5.905 -1.180 25.045 1.00 50.38 O
ATOM 13 C1' U B 11 5.946 -3.559 24.480 1.00 49.87 C
ATOM 14 N1 U B 11 5.054 -4.768 24.683 1.00 49.74 N
ATOM 15 C2 U B 11 3.692 -4.647 24.454 1.00 49.48 C
ATOM 16 O2 U B 11 3.159 -3.619 24.086 1.00 49.71 O
ATOM 17 N3 U B 11 2.952 -5.787 24.667 1.00 49.48 N
ATOM 18 C4 U B 11 3.416 -7.024 25.076 1.00 49.62 C
ATOM 19 O4 U B 11 2.617 -7.946 25.225 1.00 49.21 O
ATOM 20 C5 U B 11 4.844 -7.088 25.295 1.00 49.77 C
ATOM 21 C6 U B 11 5.586 -5.984 25.096 1.00 50.11 C
ATOM 22 P C B 12 6.673 -1.905 28.963 1.00 52.73 P
ATOM 23 OP1 C B 12 7.216 -0.705 29.643 1.00 53.29 O
ATOM 24 OP2 C B 12 6.960 -3.243 29.519 1.00 52.84 O
ATOM 25 O5' C B 12 5.091 -1.713 28.817 1.00 53.93 O
TER
Atoms:
C2: (12.187,-12.352,26.624)
OP1: (4.225,-13.853,28.353)
OP2: (5.379,-12.416,30.142)
C4: (11.675,-10.109,27.024)
O5': (6.561,-14.318,28.992)
C3': (10.278,-14.838,29.272)
C1': (10.468,-14.167,27.033)
O4': (9.084,-14.296,27.319)
C5': (7.873,-14.017,29.421)
P: (5.439,-13.180,28.875)
O2: (12.987,-13.225,26.262)
C4': (8.890,-14.841,28.651)
C2': (11.192,-15.026,28.064)
O2': (11.279,-16.359,27.598)
N1: (10.887,-12.711,27.037)
N3: (12.545,-11.042,26.629)
N4: (12.081,-8.837,27.010)
C6: (10.004,-11.739,27.433)
C5: (10.351,-10.445,27.448)
O3': (10.369,-15.892,30.211)
OP1: (4.225,-13.853,28.353)
OP2: (5.379,-12.416,30.142)
C4: (11.675,-10.109,27.024)
O5': (6.561,-14.318,28.992)
C3': (10.278,-14.838,29.272)
C1': (10.468,-14.167,27.033)
O4': (9.084,-14.296,27.319)
C5': (7.873,-14.017,29.421)
P: (5.439,-13.180,28.875)
O2: (12.987,-13.225,26.262)
C4': (8.890,-14.841,28.651)
C2': (11.192,-15.026,28.064)
O2': (11.279,-16.359,27.598)
N1: (10.887,-12.711,27.037)
N3: (12.545,-11.042,26.629)
N4: (12.081,-8.837,27.010)
C6: (10.004,-11.739,27.433)
C5: (10.351,-10.445,27.448)
O3': (10.369,-15.892,30.211)
C4: (3.416,-7.024,25.076)
N3: (2.952,-5.787,24.667)
OP1: (10.653,-6.493,26.608)
OP2: (8.724,-7.422,28.011)
C2: (3.692,-4.647,24.454)
C1': (5.946,-3.559,24.480)
C3': (6.834,-2.905,26.558)
O5': (8.383,-5.409,26.585)
O4': (7.317,-3.921,24.516)
C5': (9.011,-4.174,26.250)
P: (9.205,-6.763,26.778)
C4': (7.980,-3.254,25.627)
C2': (5.755,-2.493,25.561)
O2': (5.905,-1.180,25.045)
N1: (5.054,-4.768,24.683)
O4: (2.617,-7.946,25.225)
O2: (3.159,-3.619,24.086)
C6: (5.586,-5.984,25.096)
C5: (4.844,-7.088,25.295)
O3': (7.195,-1.869,27.447)
N3: (2.952,-5.787,24.667)
OP1: (10.653,-6.493,26.608)
OP2: (8.724,-7.422,28.011)
C2: (3.692,-4.647,24.454)
C1': (5.946,-3.559,24.480)
C3': (6.834,-2.905,26.558)
O5': (8.383,-5.409,26.585)
O4': (7.317,-3.921,24.516)
C5': (9.011,-4.174,26.250)
P: (9.205,-6.763,26.778)
C4': (7.980,-3.254,25.627)
C2': (5.755,-2.493,25.561)
O2': (5.905,-1.180,25.045)
N1: (5.054,-4.768,24.683)
O4: (2.617,-7.946,25.225)
O2: (3.159,-3.619,24.086)
C6: (5.586,-5.984,25.096)
C5: (4.844,-7.088,25.295)
O3': (7.195,-1.869,27.447)
Image (generated by PyMOL):