Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01085:01084
Extra
PDB:
ATOM 1 O3' U A1084 42.435 94.353 114.677 1.00 44.40 O
ATOM 2 P C A1085 43.831 94.908 115.244 1.00 46.61 P
ATOM 3 OP1 C A1085 44.840 93.892 114.837 1.00 45.80 O
ATOM 4 OP2 C A1085 43.696 95.272 116.677 1.00 47.18 O
ATOM 5 O5' C A1085 44.074 96.251 114.424 1.00 46.41 O
ATOM 6 C5' C A1085 44.068 96.239 112.985 1.00 47.35 C
ATOM 7 C4' C A1085 44.120 97.647 112.448 1.00 47.31 C
ATOM 8 O4' C A1085 42.981 98.380 112.968 1.00 48.57 O
ATOM 9 C3' C A1085 45.351 98.468 112.814 1.00 47.11 C
ATOM 10 O3' C A1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 11 C2' C A1085 44.893 99.212 114.068 1.00 47.46 C
ATOM 12 O2' C A1085 45.585 100.424 114.312 1.00 46.99 O
ATOM 13 C1' C A1085 43.426 99.479 113.739 1.00 47.82 C
ATOM 14 N1 C A1085 42.541 99.586 114.910 1.00 47.35 N
ATOM 15 C2 C A1085 41.815 100.768 115.105 1.00 46.80 C
ATOM 16 O2 C A1085 41.980 101.716 114.321 1.00 47.46 O
ATOM 17 N3 C A1085 40.959 100.849 116.144 1.00 47.69 N
ATOM 18 C4 C A1085 40.821 99.816 116.980 1.00 47.95 C
ATOM 19 N4 C A1085 39.948 99.936 117.982 1.00 48.46 N
ATOM 20 C5 C A1085 41.569 98.614 116.824 1.00 47.83 C
ATOM 21 C6 C A1085 42.409 98.542 115.786 1.00 47.46 C
ATOM 22 P C A1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 23 OP1 C A1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 24 OP2 C A1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 25 O5' C A1086 47.966 100.184 112.086 1.00 44.52 O
TER
ATOM 1 O3' A B1083 38.321 95.101 119.167 1.00 37.15 O
ATOM 2 P U B1084 39.714 95.854 118.975 1.00 36.10 P
ATOM 3 OP1 U B1084 40.707 95.194 119.861 1.00 36.24 O
ATOM 4 OP2 U B1084 39.457 97.300 119.111 1.00 35.58 O
ATOM 5 O5' U B1084 40.080 95.577 117.451 1.00 36.56 O
ATOM 6 C5' U B1084 40.199 94.232 116.953 1.00 37.93 C
ATOM 7 C4' U B1084 40.181 94.240 115.446 1.00 40.46 C
ATOM 8 O4' U B1084 38.924 94.784 114.986 1.00 41.68 O
ATOM 9 C3' U B1084 41.243 95.123 114.818 1.00 42.56 C
ATOM 10 O3' U B1084 42.435 94.353 114.677 1.00 44.40 O
ATOM 11 C2' U B1084 40.629 95.492 113.469 1.00 42.16 C
ATOM 12 O2' U B1084 40.832 94.503 112.480 1.00 43.38 O
ATOM 13 C1' U B1084 39.135 95.537 113.806 1.00 41.67 C
ATOM 14 N1 U B1084 38.538 96.867 113.990 1.00 40.97 N
ATOM 15 C2 U B1084 38.048 97.519 112.869 1.00 40.99 C
ATOM 16 O2 U B1084 38.131 97.055 111.746 1.00 43.55 O
ATOM 17 N3 U B1084 37.458 98.734 113.114 1.00 38.68 N
ATOM 18 C4 U B1084 37.311 99.349 114.339 1.00 41.18 C
ATOM 19 O4 U B1084 36.658 100.390 114.422 1.00 44.26 O
ATOM 20 C5 U B1084 37.868 98.625 115.439 1.00 41.93 C
ATOM 21 C6 U B1084 38.449 97.441 115.233 1.00 41.57 C
ATOM 22 P C B1085 43.831 94.908 115.244 1.00 46.61 P
ATOM 23 OP1 C B1085 44.840 93.892 114.837 1.00 45.80 O
ATOM 24 OP2 C B1085 43.696 95.272 116.677 1.00 47.18 O
ATOM 25 O5' C B1085 44.074 96.251 114.424 1.00 46.41 O
TER
ATOM 2 P C A1085 43.831 94.908 115.244 1.00 46.61 P
ATOM 3 OP1 C A1085 44.840 93.892 114.837 1.00 45.80 O
ATOM 4 OP2 C A1085 43.696 95.272 116.677 1.00 47.18 O
ATOM 5 O5' C A1085 44.074 96.251 114.424 1.00 46.41 O
ATOM 6 C5' C A1085 44.068 96.239 112.985 1.00 47.35 C
ATOM 7 C4' C A1085 44.120 97.647 112.448 1.00 47.31 C
ATOM 8 O4' C A1085 42.981 98.380 112.968 1.00 48.57 O
ATOM 9 C3' C A1085 45.351 98.468 112.814 1.00 47.11 C
ATOM 10 O3' C A1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 11 C2' C A1085 44.893 99.212 114.068 1.00 47.46 C
ATOM 12 O2' C A1085 45.585 100.424 114.312 1.00 46.99 O
ATOM 13 C1' C A1085 43.426 99.479 113.739 1.00 47.82 C
ATOM 14 N1 C A1085 42.541 99.586 114.910 1.00 47.35 N
ATOM 15 C2 C A1085 41.815 100.768 115.105 1.00 46.80 C
ATOM 16 O2 C A1085 41.980 101.716 114.321 1.00 47.46 O
ATOM 17 N3 C A1085 40.959 100.849 116.144 1.00 47.69 N
ATOM 18 C4 C A1085 40.821 99.816 116.980 1.00 47.95 C
ATOM 19 N4 C A1085 39.948 99.936 117.982 1.00 48.46 N
ATOM 20 C5 C A1085 41.569 98.614 116.824 1.00 47.83 C
ATOM 21 C6 C A1085 42.409 98.542 115.786 1.00 47.46 C
ATOM 22 P C A1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 23 OP1 C A1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 24 OP2 C A1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 25 O5' C A1086 47.966 100.184 112.086 1.00 44.52 O
TER
ATOM 1 O3' A B1083 38.321 95.101 119.167 1.00 37.15 O
ATOM 2 P U B1084 39.714 95.854 118.975 1.00 36.10 P
ATOM 3 OP1 U B1084 40.707 95.194 119.861 1.00 36.24 O
ATOM 4 OP2 U B1084 39.457 97.300 119.111 1.00 35.58 O
ATOM 5 O5' U B1084 40.080 95.577 117.451 1.00 36.56 O
ATOM 6 C5' U B1084 40.199 94.232 116.953 1.00 37.93 C
ATOM 7 C4' U B1084 40.181 94.240 115.446 1.00 40.46 C
ATOM 8 O4' U B1084 38.924 94.784 114.986 1.00 41.68 O
ATOM 9 C3' U B1084 41.243 95.123 114.818 1.00 42.56 C
ATOM 10 O3' U B1084 42.435 94.353 114.677 1.00 44.40 O
ATOM 11 C2' U B1084 40.629 95.492 113.469 1.00 42.16 C
ATOM 12 O2' U B1084 40.832 94.503 112.480 1.00 43.38 O
ATOM 13 C1' U B1084 39.135 95.537 113.806 1.00 41.67 C
ATOM 14 N1 U B1084 38.538 96.867 113.990 1.00 40.97 N
ATOM 15 C2 U B1084 38.048 97.519 112.869 1.00 40.99 C
ATOM 16 O2 U B1084 38.131 97.055 111.746 1.00 43.55 O
ATOM 17 N3 U B1084 37.458 98.734 113.114 1.00 38.68 N
ATOM 18 C4 U B1084 37.311 99.349 114.339 1.00 41.18 C
ATOM 19 O4 U B1084 36.658 100.390 114.422 1.00 44.26 O
ATOM 20 C5 U B1084 37.868 98.625 115.439 1.00 41.93 C
ATOM 21 C6 U B1084 38.449 97.441 115.233 1.00 41.57 C
ATOM 22 P C B1085 43.831 94.908 115.244 1.00 46.61 P
ATOM 23 OP1 C B1085 44.840 93.892 114.837 1.00 45.80 O
ATOM 24 OP2 C B1085 43.696 95.272 116.677 1.00 47.18 O
ATOM 25 O5' C B1085 44.074 96.251 114.424 1.00 46.41 O
TER
Atoms:
C2: (41.815,100.768,115.105)
OP1: (44.840,93.892,114.837)
OP2: (43.696,95.272,116.677)
C4: (40.821,99.816,116.980)
O5': (44.074,96.251,114.424)
C3': (45.351,98.468,112.814)
C1': (43.426,99.479,113.739)
O4': (42.981,98.380,112.968)
C5': (44.068,96.239,112.985)
P: (43.831,94.908,115.244)
O2: (41.980,101.716,114.321)
C4': (44.120,97.647,112.448)
C2': (44.893,99.212,114.068)
O2': (45.585,100.424,114.312)
N1: (42.541,99.586,114.910)
N3: (40.959,100.849,116.144)
N4: (39.948,99.936,117.982)
C6: (42.409,98.542,115.786)
C5: (41.569,98.614,116.824)
O3': (45.630,99.357,111.733)
OP1: (44.840,93.892,114.837)
OP2: (43.696,95.272,116.677)
C4: (40.821,99.816,116.980)
O5': (44.074,96.251,114.424)
C3': (45.351,98.468,112.814)
C1': (43.426,99.479,113.739)
O4': (42.981,98.380,112.968)
C5': (44.068,96.239,112.985)
P: (43.831,94.908,115.244)
O2: (41.980,101.716,114.321)
C4': (44.120,97.647,112.448)
C2': (44.893,99.212,114.068)
O2': (45.585,100.424,114.312)
N1: (42.541,99.586,114.910)
N3: (40.959,100.849,116.144)
N4: (39.948,99.936,117.982)
C6: (42.409,98.542,115.786)
C5: (41.569,98.614,116.824)
O3': (45.630,99.357,111.733)
C4: (37.311,99.349,114.339)
N3: (37.458,98.734,113.114)
OP1: (40.707,95.194,119.861)
OP2: (39.457,97.300,119.111)
C2: (38.048,97.519,112.869)
C1': (39.135,95.537,113.806)
C3': (41.243,95.123,114.818)
O5': (40.080,95.577,117.451)
O4': (38.924,94.784,114.986)
C5': (40.199,94.232,116.953)
P: (39.714,95.854,118.975)
C4': (40.181,94.240,115.446)
C2': (40.629,95.492,113.469)
O2': (40.832,94.503,112.480)
N1: (38.538,96.867,113.990)
O4: (36.658,100.390,114.422)
O2: (38.131,97.055,111.746)
C6: (38.449,97.441,115.233)
C5: (37.868,98.625,115.439)
O3': (42.435,94.353,114.677)
N3: (37.458,98.734,113.114)
OP1: (40.707,95.194,119.861)
OP2: (39.457,97.300,119.111)
C2: (38.048,97.519,112.869)
C1': (39.135,95.537,113.806)
C3': (41.243,95.123,114.818)
O5': (40.080,95.577,117.451)
O4': (38.924,94.784,114.986)
C5': (40.199,94.232,116.953)
P: (39.714,95.854,118.975)
C4': (40.181,94.240,115.446)
C2': (40.629,95.492,113.469)
O2': (40.832,94.503,112.480)
N1: (38.538,96.867,113.990)
O4: (36.658,100.390,114.422)
O2: (38.131,97.055,111.746)
C6: (38.449,97.441,115.233)
C5: (37.868,98.625,115.439)
O3': (42.435,94.353,114.677)
Image (generated by PyMOL):