Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DFU:M11:N6
Extra
PDB:
ATOM 1 O3' A A 10 15.136 37.827 -14.699 1.00 18.06 O
ATOM 2 P G A 11 13.718 37.418 -15.345 1.00 20.60 P
ATOM 3 OP1 G A 11 13.567 38.196 -16.604 1.00 21.73 O
ATOM 4 OP2 G A 11 12.683 37.510 -14.290 1.00 19.73 O
ATOM 5 O5' G A 11 13.893 35.878 -15.718 1.00 19.99 O
ATOM 6 C5' G A 11 14.970 35.438 -16.537 1.00 18.63 C
ATOM 7 C4' G A 11 15.170 33.948 -16.373 1.00 18.52 C
ATOM 8 O4' G A 11 15.558 33.662 -14.999 1.00 17.52 O
ATOM 9 C3' G A 11 13.936 33.080 -16.585 1.00 18.60 C
ATOM 10 O3' G A 11 13.702 32.814 -17.966 1.00 20.86 O
ATOM 11 C2' G A 11 14.321 31.818 -15.826 1.00 19.16 C
ATOM 12 O2' G A 11 15.270 31.054 -16.533 1.00 19.04 O
ATOM 13 C1' G A 11 14.995 32.420 -14.594 1.00 18.83 C
ATOM 14 N9 G A 11 14.029 32.675 -13.533 1.00 18.38 N
ATOM 15 C8 G A 11 13.560 33.894 -13.110 1.00 17.64 C
ATOM 16 N7 G A 11 12.695 33.800 -12.138 1.00 18.30 N
ATOM 17 C5 G A 11 12.584 32.437 -11.906 1.00 18.15 C
ATOM 18 C6 G A 11 11.780 31.722 -10.975 1.00 17.72 C
ATOM 19 O6 G A 11 10.979 32.166 -10.143 1.00 18.31 O
ATOM 20 N1 G A 11 11.974 30.352 -11.083 1.00 17.48 N
ATOM 21 C2 G A 11 12.816 29.739 -11.976 1.00 18.67 C
ATOM 22 N2 G A 11 12.842 28.391 -11.933 1.00 17.77 N
ATOM 23 N3 G A 11 13.570 30.390 -12.848 1.00 17.83 N
ATOM 24 C4 G A 11 13.403 31.728 -12.758 1.00 17.81 C
ATOM 25 P U A 12 12.226 32.387 -18.458 1.00 21.01 P
ATOM 26 OP1 U A 12 12.259 32.260 -19.935 1.00 21.68 O
ATOM 27 OP2 U A 12 11.223 33.270 -17.817 1.00 21.66 O
ATOM 28 O5' U A 12 11.993 30.955 -17.798 1.00 21.42 O
TER
ATOM 1 O3' A B 5 5.157 29.212 -5.358 1.00 26.95 O
ATOM 2 P U B 6 6.387 28.905 -4.377 1.00 25.89 P
ATOM 3 OP1 U B 6 5.876 28.864 -2.985 1.00 25.90 O
ATOM 4 OP2 U B 6 7.507 29.808 -4.722 1.00 25.13 O
ATOM 5 O5' U B 6 6.839 27.438 -4.802 1.00 24.62 O
ATOM 6 C5' U B 6 5.991 26.320 -4.583 1.00 24.13 C
ATOM 7 C4' U B 6 6.592 25.088 -5.214 1.00 21.74 C
ATOM 8 O4' U B 6 6.581 25.222 -6.662 1.00 22.36 O
ATOM 9 C3' U B 6 8.062 24.861 -4.908 1.00 21.66 C
ATOM 10 O3' U B 6 8.259 24.300 -3.619 1.00 22.29 O
ATOM 11 C2' U B 6 8.449 23.918 -6.036 1.00 20.93 C
ATOM 12 O2' U B 6 7.904 22.629 -5.841 1.00 21.92 O
ATOM 13 C1' U B 6 7.719 24.571 -7.210 1.00 21.03 C
ATOM 14 N1 U B 6 8.537 25.572 -7.909 1.00 19.64 N
ATOM 15 C2 U B 6 9.474 25.116 -8.817 1.00 18.56 C
ATOM 16 O2 U B 6 9.651 23.935 -9.050 1.00 17.23 O
ATOM 17 N3 U B 6 10.201 26.098 -9.445 1.00 18.52 N
ATOM 18 C4 U B 6 10.096 27.458 -9.255 1.00 18.06 C
ATOM 19 O4 U B 6 10.855 28.213 -9.866 1.00 20.22 O
ATOM 20 C5 U B 6 9.107 27.853 -8.298 1.00 18.98 C
ATOM 21 C6 U B 6 8.379 26.920 -7.674 1.00 20.11 C
ATOM 22 P G B 7 9.505 24.787 -2.731 1.00 24.19 P
ATOM 23 OP1 G B 7 9.450 24.111 -1.410 1.00 23.42 O
ATOM 24 OP2 G B 7 9.568 26.267 -2.796 1.00 23.63 O
ATOM 25 O5' G B 7 10.760 24.212 -3.529 1.00 21.38 O
TER
ATOM 2 P G A 11 13.718 37.418 -15.345 1.00 20.60 P
ATOM 3 OP1 G A 11 13.567 38.196 -16.604 1.00 21.73 O
ATOM 4 OP2 G A 11 12.683 37.510 -14.290 1.00 19.73 O
ATOM 5 O5' G A 11 13.893 35.878 -15.718 1.00 19.99 O
ATOM 6 C5' G A 11 14.970 35.438 -16.537 1.00 18.63 C
ATOM 7 C4' G A 11 15.170 33.948 -16.373 1.00 18.52 C
ATOM 8 O4' G A 11 15.558 33.662 -14.999 1.00 17.52 O
ATOM 9 C3' G A 11 13.936 33.080 -16.585 1.00 18.60 C
ATOM 10 O3' G A 11 13.702 32.814 -17.966 1.00 20.86 O
ATOM 11 C2' G A 11 14.321 31.818 -15.826 1.00 19.16 C
ATOM 12 O2' G A 11 15.270 31.054 -16.533 1.00 19.04 O
ATOM 13 C1' G A 11 14.995 32.420 -14.594 1.00 18.83 C
ATOM 14 N9 G A 11 14.029 32.675 -13.533 1.00 18.38 N
ATOM 15 C8 G A 11 13.560 33.894 -13.110 1.00 17.64 C
ATOM 16 N7 G A 11 12.695 33.800 -12.138 1.00 18.30 N
ATOM 17 C5 G A 11 12.584 32.437 -11.906 1.00 18.15 C
ATOM 18 C6 G A 11 11.780 31.722 -10.975 1.00 17.72 C
ATOM 19 O6 G A 11 10.979 32.166 -10.143 1.00 18.31 O
ATOM 20 N1 G A 11 11.974 30.352 -11.083 1.00 17.48 N
ATOM 21 C2 G A 11 12.816 29.739 -11.976 1.00 18.67 C
ATOM 22 N2 G A 11 12.842 28.391 -11.933 1.00 17.77 N
ATOM 23 N3 G A 11 13.570 30.390 -12.848 1.00 17.83 N
ATOM 24 C4 G A 11 13.403 31.728 -12.758 1.00 17.81 C
ATOM 25 P U A 12 12.226 32.387 -18.458 1.00 21.01 P
ATOM 26 OP1 U A 12 12.259 32.260 -19.935 1.00 21.68 O
ATOM 27 OP2 U A 12 11.223 33.270 -17.817 1.00 21.66 O
ATOM 28 O5' U A 12 11.993 30.955 -17.798 1.00 21.42 O
TER
ATOM 1 O3' A B 5 5.157 29.212 -5.358 1.00 26.95 O
ATOM 2 P U B 6 6.387 28.905 -4.377 1.00 25.89 P
ATOM 3 OP1 U B 6 5.876 28.864 -2.985 1.00 25.90 O
ATOM 4 OP2 U B 6 7.507 29.808 -4.722 1.00 25.13 O
ATOM 5 O5' U B 6 6.839 27.438 -4.802 1.00 24.62 O
ATOM 6 C5' U B 6 5.991 26.320 -4.583 1.00 24.13 C
ATOM 7 C4' U B 6 6.592 25.088 -5.214 1.00 21.74 C
ATOM 8 O4' U B 6 6.581 25.222 -6.662 1.00 22.36 O
ATOM 9 C3' U B 6 8.062 24.861 -4.908 1.00 21.66 C
ATOM 10 O3' U B 6 8.259 24.300 -3.619 1.00 22.29 O
ATOM 11 C2' U B 6 8.449 23.918 -6.036 1.00 20.93 C
ATOM 12 O2' U B 6 7.904 22.629 -5.841 1.00 21.92 O
ATOM 13 C1' U B 6 7.719 24.571 -7.210 1.00 21.03 C
ATOM 14 N1 U B 6 8.537 25.572 -7.909 1.00 19.64 N
ATOM 15 C2 U B 6 9.474 25.116 -8.817 1.00 18.56 C
ATOM 16 O2 U B 6 9.651 23.935 -9.050 1.00 17.23 O
ATOM 17 N3 U B 6 10.201 26.098 -9.445 1.00 18.52 N
ATOM 18 C4 U B 6 10.096 27.458 -9.255 1.00 18.06 C
ATOM 19 O4 U B 6 10.855 28.213 -9.866 1.00 20.22 O
ATOM 20 C5 U B 6 9.107 27.853 -8.298 1.00 18.98 C
ATOM 21 C6 U B 6 8.379 26.920 -7.674 1.00 20.11 C
ATOM 22 P G B 7 9.505 24.787 -2.731 1.00 24.19 P
ATOM 23 OP1 G B 7 9.450 24.111 -1.410 1.00 23.42 O
ATOM 24 OP2 G B 7 9.568 26.267 -2.796 1.00 23.63 O
ATOM 25 O5' G B 7 10.760 24.212 -3.529 1.00 21.38 O
TER
Atoms:
OP1: (13.567,38.196,-16.604)
OP2: (12.683,37.510,-14.290)
C3': (13.936,33.080,-16.585)
C1': (14.995,32.420,-14.594)
C5': (14.970,35.438,-16.537)
O6: (10.979,32.166,-10.143)
O4': (15.558,33.662,-14.999)
C8: (13.560,33.894,-13.110)
C2: (12.816,29.739,-11.976)
C6: (11.780,31.722,-10.975)
C5: (12.584,32.437,-11.906)
C4: (13.403,31.728,-12.758)
P: (13.718,37.418,-15.345)
C4': (15.170,33.948,-16.373)
C2': (14.321,31.818,-15.826)
O2': (15.270,31.054,-16.533)
N1: (11.974,30.352,-11.083)
N2: (12.842,28.391,-11.933)
N3: (13.570,30.390,-12.848)
N7: (12.695,33.800,-12.138)
N9: (14.029,32.675,-13.533)
O5': (13.893,35.878,-15.718)
O3': (13.702,32.814,-17.966)
OP2: (12.683,37.510,-14.290)
C3': (13.936,33.080,-16.585)
C1': (14.995,32.420,-14.594)
C5': (14.970,35.438,-16.537)
O6: (10.979,32.166,-10.143)
O4': (15.558,33.662,-14.999)
C8: (13.560,33.894,-13.110)
C2: (12.816,29.739,-11.976)
C6: (11.780,31.722,-10.975)
C5: (12.584,32.437,-11.906)
C4: (13.403,31.728,-12.758)
P: (13.718,37.418,-15.345)
C4': (15.170,33.948,-16.373)
C2': (14.321,31.818,-15.826)
O2': (15.270,31.054,-16.533)
N1: (11.974,30.352,-11.083)
N2: (12.842,28.391,-11.933)
N3: (13.570,30.390,-12.848)
N7: (12.695,33.800,-12.138)
N9: (14.029,32.675,-13.533)
O5': (13.893,35.878,-15.718)
O3': (13.702,32.814,-17.966)
C4: (10.096,27.458,-9.255)
N3: (10.201,26.098,-9.445)
OP1: (5.876,28.864,-2.985)
OP2: (7.507,29.808,-4.722)
C2: (9.474,25.116,-8.817)
C1': (7.719,24.571,-7.210)
C3': (8.062,24.861,-4.908)
O5': (6.839,27.438,-4.802)
O4': (6.581,25.222,-6.662)
C5': (5.991,26.320,-4.583)
P: (6.387,28.905,-4.377)
C4': (6.592,25.088,-5.214)
C2': (8.449,23.918,-6.036)
O2': (7.904,22.629,-5.841)
N1: (8.537,25.572,-7.909)
O4: (10.855,28.213,-9.866)
O2: (9.651,23.935,-9.050)
C6: (8.379,26.920,-7.674)
C5: (9.107,27.853,-8.298)
O3': (8.259,24.300,-3.619)
N3: (10.201,26.098,-9.445)
OP1: (5.876,28.864,-2.985)
OP2: (7.507,29.808,-4.722)
C2: (9.474,25.116,-8.817)
C1': (7.719,24.571,-7.210)
C3': (8.062,24.861,-4.908)
O5': (6.839,27.438,-4.802)
O4': (6.581,25.222,-6.662)
C5': (5.991,26.320,-4.583)
P: (6.387,28.905,-4.377)
C4': (6.592,25.088,-5.214)
C2': (8.449,23.918,-6.036)
O2': (7.904,22.629,-5.841)
N1: (8.537,25.572,-7.909)
O4: (10.855,28.213,-9.866)
O2: (9.651,23.935,-9.050)
C6: (8.379,26.920,-7.674)
C5: (9.107,27.853,-8.298)
O3': (8.259,24.300,-3.619)
Image (generated by PyMOL):