Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11205:11201
Extra
PDB:
ATOM 1 O3' A A1204 4.529 -5.433 -30.368 1.00180.55 O
ATOM 2 P G A1205 3.257 -6.400 -30.553 1.00164.60 P
ATOM 3 OP1 G A1205 3.466 -7.572 -29.668 1.00164.55 O
ATOM 4 OP2 G A1205 3.091 -6.631 -32.011 1.00164.75 O
ATOM 5 O5' G A1205 2.053 -5.503 -29.998 1.00165.45 O
ATOM 6 C5' G A1205 2.141 -4.857 -28.731 1.00165.33 C
ATOM 7 C4' G A1205 1.201 -3.673 -28.632 1.00165.95 C
ATOM 8 O4' G A1205 1.638 -2.612 -29.509 1.00165.51 O
ATOM 9 C3' G A1205 -0.249 -3.920 -29.025 1.00167.10 C
ATOM 10 O3' G A1205 -1.005 -4.489 -27.966 1.00167.75 O
ATOM 11 C2' G A1205 -0.748 -2.529 -29.438 1.00167.36 C
ATOM 12 O2' G A1205 -1.264 -1.826 -28.318 1.00167.70 O
ATOM 13 C1' G A1205 0.536 -1.829 -29.903 1.00166.29 C
ATOM 14 N9 G A1205 0.588 -1.617 -31.368 1.00166.23 N
ATOM 15 C8 G A1205 0.768 -0.391 -31.970 1.00165.98 C
ATOM 16 N7 G A1205 0.793 -0.438 -33.275 1.00165.96 N
ATOM 17 C5 G A1205 0.625 -1.785 -33.576 1.00166.21 C
ATOM 18 C6 G A1205 0.570 -2.454 -34.838 1.00166.31 C
ATOM 19 O6 G A1205 0.660 -1.984 -35.985 1.00166.20 O
ATOM 20 N1 G A1205 0.390 -3.825 -34.678 1.00166.58 N
ATOM 21 C2 G A1205 0.275 -4.475 -33.472 1.00166.73 C
ATOM 22 N2 G A1205 0.104 -5.806 -33.523 1.00166.99 N
ATOM 23 N3 G A1205 0.325 -3.864 -32.296 1.00166.64 N
ATOM 24 C4 G A1205 0.501 -2.527 -32.410 1.00166.38 C
ATOM 25 P G A1206 -1.232 -6.083 -27.869 1.00190.67 P
ATOM 26 OP1 G A1206 -0.264 -6.728 -28.795 1.00189.97 O
ATOM 27 OP2 G A1206 -2.684 -6.325 -28.071 1.00191.82 O
ATOM 28 O5' G A1206 -0.837 -6.405 -26.353 1.00190.39 O
TER
ATOM 1 O3' G B1200 -2.127 -10.353 -41.521 1.00212.10 O
ATOM 2 P C B1201 -0.598 -10.089 -41.965 1.00193.70 P
ATOM 3 OP1 C B1201 -0.492 -10.421 -43.412 1.00193.66 O
ATOM 4 OP2 C B1201 0.263 -10.818 -41.007 1.00193.10 O
ATOM 5 O5' C B1201 -0.437 -8.513 -41.757 1.00193.42 O
ATOM 6 C5' C B1201 -1.224 -7.588 -42.504 1.00193.94 C
ATOM 7 C4' C B1201 -1.209 -6.206 -41.885 1.00193.80 C
ATOM 8 O4' C B1201 -1.884 -6.234 -40.596 1.00194.32 O
ATOM 9 C3' C B1201 0.165 -5.624 -41.572 1.00192.67 C
ATOM 10 O3' C B1201 0.813 -5.061 -42.705 1.00192.12 O
ATOM 11 C2' C B1201 -0.148 -4.619 -40.469 1.00192.82 C
ATOM 12 O2' C B1201 -0.726 -3.439 -41.009 1.00193.16 O
ATOM 13 C1' C B1201 -1.227 -5.371 -39.688 1.00193.73 C
ATOM 14 N1 C B1201 -0.649 -6.192 -38.584 1.00193.36 N
ATOM 15 C2 C B1201 -0.446 -5.582 -37.340 1.00193.14 C
ATOM 16 O2 C B1201 -0.762 -4.386 -37.207 1.00193.27 O
ATOM 17 N3 C B1201 0.082 -6.312 -36.320 1.00192.80 N
ATOM 18 C4 C B1201 0.407 -7.596 -36.495 1.00192.67 C
ATOM 19 N4 C B1201 0.919 -8.260 -35.455 1.00192.33 N
ATOM 20 C5 C B1201 0.219 -8.246 -37.747 1.00192.88 C
ATOM 21 C6 C B1201 -0.304 -7.515 -38.744 1.00193.21 C
ATOM 22 P U B1202 2.075 -5.813 -43.378 1.00173.97 P
ATOM 23 OP1 U B1202 1.925 -5.687 -44.856 1.00174.08 O
ATOM 24 OP2 U B1202 2.143 -7.172 -42.782 1.00174.04 O
ATOM 25 O5' U B1202 3.319 -4.946 -42.883 1.00172.92 O
TER
ATOM 2 P G A1205 3.257 -6.400 -30.553 1.00164.60 P
ATOM 3 OP1 G A1205 3.466 -7.572 -29.668 1.00164.55 O
ATOM 4 OP2 G A1205 3.091 -6.631 -32.011 1.00164.75 O
ATOM 5 O5' G A1205 2.053 -5.503 -29.998 1.00165.45 O
ATOM 6 C5' G A1205 2.141 -4.857 -28.731 1.00165.33 C
ATOM 7 C4' G A1205 1.201 -3.673 -28.632 1.00165.95 C
ATOM 8 O4' G A1205 1.638 -2.612 -29.509 1.00165.51 O
ATOM 9 C3' G A1205 -0.249 -3.920 -29.025 1.00167.10 C
ATOM 10 O3' G A1205 -1.005 -4.489 -27.966 1.00167.75 O
ATOM 11 C2' G A1205 -0.748 -2.529 -29.438 1.00167.36 C
ATOM 12 O2' G A1205 -1.264 -1.826 -28.318 1.00167.70 O
ATOM 13 C1' G A1205 0.536 -1.829 -29.903 1.00166.29 C
ATOM 14 N9 G A1205 0.588 -1.617 -31.368 1.00166.23 N
ATOM 15 C8 G A1205 0.768 -0.391 -31.970 1.00165.98 C
ATOM 16 N7 G A1205 0.793 -0.438 -33.275 1.00165.96 N
ATOM 17 C5 G A1205 0.625 -1.785 -33.576 1.00166.21 C
ATOM 18 C6 G A1205 0.570 -2.454 -34.838 1.00166.31 C
ATOM 19 O6 G A1205 0.660 -1.984 -35.985 1.00166.20 O
ATOM 20 N1 G A1205 0.390 -3.825 -34.678 1.00166.58 N
ATOM 21 C2 G A1205 0.275 -4.475 -33.472 1.00166.73 C
ATOM 22 N2 G A1205 0.104 -5.806 -33.523 1.00166.99 N
ATOM 23 N3 G A1205 0.325 -3.864 -32.296 1.00166.64 N
ATOM 24 C4 G A1205 0.501 -2.527 -32.410 1.00166.38 C
ATOM 25 P G A1206 -1.232 -6.083 -27.869 1.00190.67 P
ATOM 26 OP1 G A1206 -0.264 -6.728 -28.795 1.00189.97 O
ATOM 27 OP2 G A1206 -2.684 -6.325 -28.071 1.00191.82 O
ATOM 28 O5' G A1206 -0.837 -6.405 -26.353 1.00190.39 O
TER
ATOM 1 O3' G B1200 -2.127 -10.353 -41.521 1.00212.10 O
ATOM 2 P C B1201 -0.598 -10.089 -41.965 1.00193.70 P
ATOM 3 OP1 C B1201 -0.492 -10.421 -43.412 1.00193.66 O
ATOM 4 OP2 C B1201 0.263 -10.818 -41.007 1.00193.10 O
ATOM 5 O5' C B1201 -0.437 -8.513 -41.757 1.00193.42 O
ATOM 6 C5' C B1201 -1.224 -7.588 -42.504 1.00193.94 C
ATOM 7 C4' C B1201 -1.209 -6.206 -41.885 1.00193.80 C
ATOM 8 O4' C B1201 -1.884 -6.234 -40.596 1.00194.32 O
ATOM 9 C3' C B1201 0.165 -5.624 -41.572 1.00192.67 C
ATOM 10 O3' C B1201 0.813 -5.061 -42.705 1.00192.12 O
ATOM 11 C2' C B1201 -0.148 -4.619 -40.469 1.00192.82 C
ATOM 12 O2' C B1201 -0.726 -3.439 -41.009 1.00193.16 O
ATOM 13 C1' C B1201 -1.227 -5.371 -39.688 1.00193.73 C
ATOM 14 N1 C B1201 -0.649 -6.192 -38.584 1.00193.36 N
ATOM 15 C2 C B1201 -0.446 -5.582 -37.340 1.00193.14 C
ATOM 16 O2 C B1201 -0.762 -4.386 -37.207 1.00193.27 O
ATOM 17 N3 C B1201 0.082 -6.312 -36.320 1.00192.80 N
ATOM 18 C4 C B1201 0.407 -7.596 -36.495 1.00192.67 C
ATOM 19 N4 C B1201 0.919 -8.260 -35.455 1.00192.33 N
ATOM 20 C5 C B1201 0.219 -8.246 -37.747 1.00192.88 C
ATOM 21 C6 C B1201 -0.304 -7.515 -38.744 1.00193.21 C
ATOM 22 P U B1202 2.075 -5.813 -43.378 1.00173.97 P
ATOM 23 OP1 U B1202 1.925 -5.687 -44.856 1.00174.08 O
ATOM 24 OP2 U B1202 2.143 -7.172 -42.782 1.00174.04 O
ATOM 25 O5' U B1202 3.319 -4.946 -42.883 1.00172.92 O
TER
Atoms:
OP1: (3.466,-7.572,-29.668)
OP2: (3.091,-6.631,-32.011)
C3': (-0.249,-3.920,-29.025)
C1': (0.536,-1.829,-29.903)
C5': (2.141,-4.857,-28.731)
O6: (0.660,-1.984,-35.985)
O4': (1.638,-2.612,-29.509)
C8: (0.768,-0.391,-31.970)
C2: (0.275,-4.475,-33.472)
C6: (0.570,-2.454,-34.838)
C5: (0.625,-1.785,-33.576)
C4: (0.501,-2.527,-32.410)
P: (3.257,-6.400,-30.553)
C4': (1.201,-3.673,-28.632)
C2': (-0.748,-2.529,-29.438)
O2': (-1.264,-1.826,-28.318)
N1: (0.390,-3.825,-34.678)
N2: (0.104,-5.806,-33.523)
N3: (0.325,-3.864,-32.296)
N7: (0.793,-0.438,-33.275)
N9: (0.588,-1.617,-31.368)
O5': (2.053,-5.503,-29.998)
O3': (-1.005,-4.489,-27.966)
OP2: (3.091,-6.631,-32.011)
C3': (-0.249,-3.920,-29.025)
C1': (0.536,-1.829,-29.903)
C5': (2.141,-4.857,-28.731)
O6: (0.660,-1.984,-35.985)
O4': (1.638,-2.612,-29.509)
C8: (0.768,-0.391,-31.970)
C2: (0.275,-4.475,-33.472)
C6: (0.570,-2.454,-34.838)
C5: (0.625,-1.785,-33.576)
C4: (0.501,-2.527,-32.410)
P: (3.257,-6.400,-30.553)
C4': (1.201,-3.673,-28.632)
C2': (-0.748,-2.529,-29.438)
O2': (-1.264,-1.826,-28.318)
N1: (0.390,-3.825,-34.678)
N2: (0.104,-5.806,-33.523)
N3: (0.325,-3.864,-32.296)
N7: (0.793,-0.438,-33.275)
N9: (0.588,-1.617,-31.368)
O5': (2.053,-5.503,-29.998)
O3': (-1.005,-4.489,-27.966)
C2: (-0.446,-5.582,-37.340)
OP1: (-0.492,-10.421,-43.412)
OP2: (0.263,-10.818,-41.007)
C4: (0.407,-7.596,-36.495)
O5': (-0.437,-8.513,-41.757)
C3': (0.165,-5.624,-41.572)
C1': (-1.227,-5.371,-39.688)
O4': (-1.884,-6.234,-40.596)
C5': (-1.224,-7.588,-42.504)
P: (-0.598,-10.089,-41.965)
O2: (-0.762,-4.386,-37.207)
C4': (-1.209,-6.206,-41.885)
C2': (-0.148,-4.619,-40.469)
O2': (-0.726,-3.439,-41.009)
N1: (-0.649,-6.192,-38.584)
N3: (0.082,-6.312,-36.320)
N4: (0.919,-8.260,-35.455)
C6: (-0.304,-7.515,-38.744)
C5: (0.219,-8.246,-37.747)
O3': (0.813,-5.061,-42.705)
OP1: (-0.492,-10.421,-43.412)
OP2: (0.263,-10.818,-41.007)
C4: (0.407,-7.596,-36.495)
O5': (-0.437,-8.513,-41.757)
C3': (0.165,-5.624,-41.572)
C1': (-1.227,-5.371,-39.688)
O4': (-1.884,-6.234,-40.596)
C5': (-1.224,-7.588,-42.504)
P: (-0.598,-10.089,-41.965)
O2: (-0.762,-4.386,-37.207)
C4': (-1.209,-6.206,-41.885)
C2': (-0.148,-4.619,-40.469)
O2': (-0.726,-3.439,-41.009)
N1: (-0.649,-6.192,-38.584)
N3: (0.082,-6.312,-36.320)
N4: (0.919,-8.260,-35.455)
C6: (-0.304,-7.515,-38.744)
C5: (0.219,-8.246,-37.747)
O3': (0.813,-5.061,-42.705)
Image (generated by PyMOL):