Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12650:12596
Extra
PDB:
ATOM 1 O3' A A2649 -2.370 15.753 11.269 1.00 47.46 O
ATOM 2 P G A2650 -3.533 16.524 10.502 1.00 59.83 P
ATOM 3 OP1 G A2650 -3.336 16.306 9.071 1.00 60.28 O
ATOM 4 OP2 G A2650 -3.547 17.901 11.003 1.00 59.87 O
ATOM 5 O5' G A2650 -4.831 15.718 10.992 1.00 59.86 O
ATOM 6 C5' G A2650 -5.838 16.336 11.781 1.00 59.94 C
ATOM 7 C4' G A2650 -6.495 15.367 12.727 1.00 59.62 C
ATOM 8 O4' G A2650 -6.526 14.051 12.144 1.00 59.65 O
ATOM 9 C3' G A2650 -5.821 15.212 14.082 1.00 58.93 C
ATOM 10 O3' G A2650 -6.355 16.121 15.037 1.00 58.88 O
ATOM 11 C2' G A2650 -6.088 13.757 14.469 1.00 58.66 C
ATOM 12 O2' G A2650 -7.309 13.678 15.176 1.00 58.73 O
ATOM 13 C1' G A2650 -6.297 13.067 13.126 1.00 59.10 C
ATOM 14 N9 G A2650 -5.171 12.246 12.664 1.00 58.85 N
ATOM 15 C8 G A2650 -3.947 12.675 12.253 1.00 58.74 C
ATOM 16 N7 G A2650 -3.274 11.744 11.661 1.00 58.66 N
ATOM 17 C5 G A2650 -4.101 10.659 11.653 1.00 58.74 C
ATOM 18 C6 G A2650 -3.891 9.385 11.125 1.00 58.73 C
ATOM 19 O6 G A2650 -2.884 8.968 10.585 1.00 58.63 O
ATOM 20 N1 G A2650 -4.975 8.559 11.269 1.00 58.87 N
ATOM 21 C2 G A2650 -6.154 8.938 11.856 1.00 59.01 C
ATOM 22 N2 G A2650 -7.117 7.986 11.921 1.00 59.15 N
ATOM 23 N3 G A2650 -6.362 10.155 12.346 1.00 59.03 N
ATOM 24 C4 G A2650 -5.292 10.956 12.221 1.00 58.88 C
ATOM 25 P C A2651 -5.508 17.369 15.581 1.00 62.86 P
ATOM 26 OP1 C A2651 -4.179 16.855 15.974 1.00 62.30 O
ATOM 27 OP2 C A2651 -6.346 18.057 16.612 1.00 62.85 O
ATOM 28 O5' C A2651 -5.375 18.292 14.298 1.00 63.43 O
TER
ATOM 1 O3' U B2595 -10.112 1.715 5.985 1.00100.30 O
ATOM 2 P C B2596 -9.095 0.547 6.412 1.00 74.18 P
ATOM 3 OP1 C B2596 -8.963 -0.356 5.239 1.00 74.58 O
ATOM 4 OP2 C B2596 -9.603 -0.020 7.701 1.00 73.78 O
ATOM 5 O5' C B2596 -7.706 1.327 6.668 1.00 73.74 O
ATOM 6 C5' C B2596 -6.799 1.642 5.604 1.00 73.94 C
ATOM 7 C4' C B2596 -5.876 2.785 5.985 1.00 73.61 C
ATOM 8 O4' C B2596 -6.651 3.856 6.576 1.00 73.66 O
ATOM 9 C3' C B2596 -4.819 2.480 7.035 1.00 72.88 C
ATOM 10 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 11 C2' C B2596 -4.553 3.850 7.660 1.00 72.66 C
ATOM 12 O2' C B2596 -3.650 4.589 6.862 1.00 72.80 O
ATOM 13 C1' C B2596 -5.901 4.527 7.553 1.00 73.11 C
ATOM 14 N1 C B2596 -6.643 4.529 8.823 1.00 72.81 N
ATOM 15 C2 C B2596 -6.424 5.617 9.656 1.00 72.53 C
ATOM 16 O2 C B2596 -5.616 6.485 9.331 1.00 72.51 O
ATOM 17 N3 C B2596 -7.079 5.719 10.811 1.00 72.27 N
ATOM 18 C4 C B2596 -7.938 4.783 11.148 1.00 72.30 C
ATOM 19 N4 C B2596 -8.539 4.961 12.319 1.00 72.04 N
ATOM 20 C5 C B2596 -8.207 3.653 10.322 1.00 72.60 C
ATOM 21 C6 C B2596 -7.540 3.565 9.169 1.00 72.85 C
ATOM 22 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 23 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 24 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 25 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
TER
ATOM 2 P G A2650 -3.533 16.524 10.502 1.00 59.83 P
ATOM 3 OP1 G A2650 -3.336 16.306 9.071 1.00 60.28 O
ATOM 4 OP2 G A2650 -3.547 17.901 11.003 1.00 59.87 O
ATOM 5 O5' G A2650 -4.831 15.718 10.992 1.00 59.86 O
ATOM 6 C5' G A2650 -5.838 16.336 11.781 1.00 59.94 C
ATOM 7 C4' G A2650 -6.495 15.367 12.727 1.00 59.62 C
ATOM 8 O4' G A2650 -6.526 14.051 12.144 1.00 59.65 O
ATOM 9 C3' G A2650 -5.821 15.212 14.082 1.00 58.93 C
ATOM 10 O3' G A2650 -6.355 16.121 15.037 1.00 58.88 O
ATOM 11 C2' G A2650 -6.088 13.757 14.469 1.00 58.66 C
ATOM 12 O2' G A2650 -7.309 13.678 15.176 1.00 58.73 O
ATOM 13 C1' G A2650 -6.297 13.067 13.126 1.00 59.10 C
ATOM 14 N9 G A2650 -5.171 12.246 12.664 1.00 58.85 N
ATOM 15 C8 G A2650 -3.947 12.675 12.253 1.00 58.74 C
ATOM 16 N7 G A2650 -3.274 11.744 11.661 1.00 58.66 N
ATOM 17 C5 G A2650 -4.101 10.659 11.653 1.00 58.74 C
ATOM 18 C6 G A2650 -3.891 9.385 11.125 1.00 58.73 C
ATOM 19 O6 G A2650 -2.884 8.968 10.585 1.00 58.63 O
ATOM 20 N1 G A2650 -4.975 8.559 11.269 1.00 58.87 N
ATOM 21 C2 G A2650 -6.154 8.938 11.856 1.00 59.01 C
ATOM 22 N2 G A2650 -7.117 7.986 11.921 1.00 59.15 N
ATOM 23 N3 G A2650 -6.362 10.155 12.346 1.00 59.03 N
ATOM 24 C4 G A2650 -5.292 10.956 12.221 1.00 58.88 C
ATOM 25 P C A2651 -5.508 17.369 15.581 1.00 62.86 P
ATOM 26 OP1 C A2651 -4.179 16.855 15.974 1.00 62.30 O
ATOM 27 OP2 C A2651 -6.346 18.057 16.612 1.00 62.85 O
ATOM 28 O5' C A2651 -5.375 18.292 14.298 1.00 63.43 O
TER
ATOM 1 O3' U B2595 -10.112 1.715 5.985 1.00100.30 O
ATOM 2 P C B2596 -9.095 0.547 6.412 1.00 74.18 P
ATOM 3 OP1 C B2596 -8.963 -0.356 5.239 1.00 74.58 O
ATOM 4 OP2 C B2596 -9.603 -0.020 7.701 1.00 73.78 O
ATOM 5 O5' C B2596 -7.706 1.327 6.668 1.00 73.74 O
ATOM 6 C5' C B2596 -6.799 1.642 5.604 1.00 73.94 C
ATOM 7 C4' C B2596 -5.876 2.785 5.985 1.00 73.61 C
ATOM 8 O4' C B2596 -6.651 3.856 6.576 1.00 73.66 O
ATOM 9 C3' C B2596 -4.819 2.480 7.035 1.00 72.88 C
ATOM 10 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 11 C2' C B2596 -4.553 3.850 7.660 1.00 72.66 C
ATOM 12 O2' C B2596 -3.650 4.589 6.862 1.00 72.80 O
ATOM 13 C1' C B2596 -5.901 4.527 7.553 1.00 73.11 C
ATOM 14 N1 C B2596 -6.643 4.529 8.823 1.00 72.81 N
ATOM 15 C2 C B2596 -6.424 5.617 9.656 1.00 72.53 C
ATOM 16 O2 C B2596 -5.616 6.485 9.331 1.00 72.51 O
ATOM 17 N3 C B2596 -7.079 5.719 10.811 1.00 72.27 N
ATOM 18 C4 C B2596 -7.938 4.783 11.148 1.00 72.30 C
ATOM 19 N4 C B2596 -8.539 4.961 12.319 1.00 72.04 N
ATOM 20 C5 C B2596 -8.207 3.653 10.322 1.00 72.60 C
ATOM 21 C6 C B2596 -7.540 3.565 9.169 1.00 72.85 C
ATOM 22 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 23 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 24 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 25 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
TER
Atoms:
OP1: (-3.336,16.306,9.071)
OP2: (-3.547,17.901,11.003)
C3': (-5.821,15.212,14.082)
C1': (-6.297,13.067,13.126)
C5': (-5.838,16.336,11.781)
O6: (-2.884,8.968,10.585)
O4': (-6.526,14.051,12.144)
C8: (-3.947,12.675,12.253)
C2: (-6.154,8.938,11.856)
C6: (-3.891,9.385,11.125)
C5: (-4.101,10.659,11.653)
C4: (-5.292,10.956,12.221)
P: (-3.533,16.524,10.502)
C4': (-6.495,15.367,12.727)
C2': (-6.088,13.757,14.469)
O2': (-7.309,13.678,15.176)
N1: (-4.975,8.559,11.269)
N2: (-7.117,7.986,11.921)
N3: (-6.362,10.155,12.346)
N7: (-3.274,11.744,11.661)
N9: (-5.171,12.246,12.664)
O5': (-4.831,15.718,10.992)
O3': (-6.355,16.121,15.037)
OP2: (-3.547,17.901,11.003)
C3': (-5.821,15.212,14.082)
C1': (-6.297,13.067,13.126)
C5': (-5.838,16.336,11.781)
O6: (-2.884,8.968,10.585)
O4': (-6.526,14.051,12.144)
C8: (-3.947,12.675,12.253)
C2: (-6.154,8.938,11.856)
C6: (-3.891,9.385,11.125)
C5: (-4.101,10.659,11.653)
C4: (-5.292,10.956,12.221)
P: (-3.533,16.524,10.502)
C4': (-6.495,15.367,12.727)
C2': (-6.088,13.757,14.469)
O2': (-7.309,13.678,15.176)
N1: (-4.975,8.559,11.269)
N2: (-7.117,7.986,11.921)
N3: (-6.362,10.155,12.346)
N7: (-3.274,11.744,11.661)
N9: (-5.171,12.246,12.664)
O5': (-4.831,15.718,10.992)
O3': (-6.355,16.121,15.037)
C2: (-6.424,5.617,9.656)
OP1: (-8.963,-0.356,5.239)
OP2: (-9.603,-0.020,7.701)
C4: (-7.938,4.783,11.148)
O5': (-7.706,1.327,6.668)
C3': (-4.819,2.480,7.035)
C1': (-5.901,4.527,7.553)
O4': (-6.651,3.856,6.576)
C5': (-6.799,1.642,5.604)
P: (-9.095,0.547,6.412)
O2: (-5.616,6.485,9.331)
C4': (-5.876,2.785,5.985)
C2': (-4.553,3.850,7.660)
O2': (-3.650,4.589,6.862)
N1: (-6.643,4.529,8.823)
N3: (-7.079,5.719,10.811)
N4: (-8.539,4.961,12.319)
C6: (-7.540,3.565,9.169)
C5: (-8.207,3.653,10.322)
O3': (-3.647,1.889,6.480)
OP1: (-8.963,-0.356,5.239)
OP2: (-9.603,-0.020,7.701)
C4: (-7.938,4.783,11.148)
O5': (-7.706,1.327,6.668)
C3': (-4.819,2.480,7.035)
C1': (-5.901,4.527,7.553)
O4': (-6.651,3.856,6.576)
C5': (-6.799,1.642,5.604)
P: (-9.095,0.547,6.412)
O2: (-5.616,6.485,9.331)
C4': (-5.876,2.785,5.985)
C2': (-4.553,3.850,7.660)
O2': (-3.650,4.589,6.862)
N1: (-6.643,4.529,8.823)
N3: (-7.079,5.719,10.811)
N4: (-8.539,4.961,12.319)
C6: (-7.540,3.565,9.169)
C5: (-8.207,3.653,10.322)
O3': (-3.647,1.889,6.480)
Image (generated by PyMOL):