Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11239:11131
Extra
PDB:
ATOM 1 O3' A A1238 32.333 -8.526 6.789 1.00 51.59 O
ATOM 2 P G A1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 3 OP1 G A1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 4 OP2 G A1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 5 O5' G A1239 34.279 -7.361 7.787 1.00 47.29 O
ATOM 6 C5' G A1239 34.043 -5.981 8.034 1.00 47.21 C
ATOM 7 C4' G A1239 34.976 -5.092 7.242 1.00 47.43 C
ATOM 8 O4' G A1239 34.476 -4.954 5.873 1.00 47.99 O
ATOM 9 C3' G A1239 35.119 -3.652 7.739 1.00 47.25 C
ATOM 10 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 11 C2' G A1239 35.530 -2.901 6.488 1.00 47.69 C
ATOM 12 O2' G A1239 36.900 -3.084 6.255 1.00 47.67 O
ATOM 13 C1' G A1239 34.771 -3.652 5.392 1.00 48.16 C
ATOM 14 N9 G A1239 33.508 -2.972 4.996 1.00 48.43 N
ATOM 15 C8 G A1239 32.208 -3.397 5.120 1.00 48.49 C
ATOM 16 N7 G A1239 31.346 -2.563 4.621 1.00 48.79 N
ATOM 17 C5 G A1239 32.089 -1.519 4.135 1.00 48.93 C
ATOM 18 C6 G A1239 31.733 -0.303 3.468 1.00 49.27 C
ATOM 19 O6 G A1239 30.669 0.187 3.115 1.00 49.53 O
ATOM 20 N1 G A1239 32.835 0.457 3.162 1.00 49.31 N
ATOM 21 C2 G A1239 34.127 0.119 3.417 1.00 49.08 C
ATOM 22 N2 G A1239 35.021 1.027 2.989 1.00 49.21 N
ATOM 23 N3 G A1239 34.478 -1.004 4.026 1.00 48.77 N
ATOM 24 C4 G A1239 33.426 -1.765 4.357 1.00 48.71 C
ATOM 25 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 26 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 27 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 28 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
TER
ATOM 1 O3' G B1130 42.193 1.023 -1.623 1.00 52.16 O
ATOM 2 P C B1131 41.334 2.378 -1.455 1.00 50.74 P
ATOM 3 OP1 C B1131 40.263 2.315 -2.475 1.00 51.24 O
ATOM 4 OP2 C B1131 42.278 3.538 -1.476 1.00 50.75 O
ATOM 5 O5' C B1131 40.703 2.205 -0.031 1.00 50.18 O
ATOM 6 C5' C B1131 39.921 1.073 0.229 1.00 50.07 C
ATOM 7 C4' C B1131 39.539 1.012 1.656 1.00 49.51 C
ATOM 8 O4' C B1131 40.696 0.700 2.458 1.00 49.11 O
ATOM 9 C3' C B1131 39.008 2.297 2.240 1.00 49.37 C
ATOM 10 O3' C B1131 37.648 2.466 1.953 1.00 49.59 O
ATOM 11 C2' C B1131 39.259 2.089 3.703 1.00 48.77 C
ATOM 12 O2' C B1131 38.295 1.183 4.214 1.00 48.59 O
ATOM 13 C1' C B1131 40.616 1.385 3.680 1.00 48.66 C
ATOM 14 N1 C B1131 41.749 2.346 3.758 1.00 48.61 N
ATOM 15 C2 C B1131 42.101 2.881 4.973 1.00 48.15 C
ATOM 16 O2 C B1131 41.443 2.515 5.924 1.00 47.81 O
ATOM 17 N3 C B1131 43.109 3.758 5.135 1.00 48.09 N
ATOM 18 C4 C B1131 43.779 4.117 4.058 1.00 48.49 C
ATOM 19 N4 C B1131 44.781 4.982 4.182 1.00 48.45 N
ATOM 20 C5 C B1131 43.442 3.600 2.776 1.00 48.97 C
ATOM 21 C6 C B1131 42.443 2.731 2.668 1.00 49.02 C
ATOM 22 P U B1132 36.974 3.912 1.941 1.00 44.93 P
ATOM 23 OP1 U B1132 35.541 3.682 1.749 1.00 45.11 O
ATOM 24 OP2 U B1132 37.708 4.729 0.941 1.00 45.33 O
ATOM 25 O5' U B1132 37.236 4.475 3.399 1.00 44.36 O
TER
ATOM 2 P G A1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 3 OP1 G A1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 4 OP2 G A1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 5 O5' G A1239 34.279 -7.361 7.787 1.00 47.29 O
ATOM 6 C5' G A1239 34.043 -5.981 8.034 1.00 47.21 C
ATOM 7 C4' G A1239 34.976 -5.092 7.242 1.00 47.43 C
ATOM 8 O4' G A1239 34.476 -4.954 5.873 1.00 47.99 O
ATOM 9 C3' G A1239 35.119 -3.652 7.739 1.00 47.25 C
ATOM 10 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 11 C2' G A1239 35.530 -2.901 6.488 1.00 47.69 C
ATOM 12 O2' G A1239 36.900 -3.084 6.255 1.00 47.67 O
ATOM 13 C1' G A1239 34.771 -3.652 5.392 1.00 48.16 C
ATOM 14 N9 G A1239 33.508 -2.972 4.996 1.00 48.43 N
ATOM 15 C8 G A1239 32.208 -3.397 5.120 1.00 48.49 C
ATOM 16 N7 G A1239 31.346 -2.563 4.621 1.00 48.79 N
ATOM 17 C5 G A1239 32.089 -1.519 4.135 1.00 48.93 C
ATOM 18 C6 G A1239 31.733 -0.303 3.468 1.00 49.27 C
ATOM 19 O6 G A1239 30.669 0.187 3.115 1.00 49.53 O
ATOM 20 N1 G A1239 32.835 0.457 3.162 1.00 49.31 N
ATOM 21 C2 G A1239 34.127 0.119 3.417 1.00 49.08 C
ATOM 22 N2 G A1239 35.021 1.027 2.989 1.00 49.21 N
ATOM 23 N3 G A1239 34.478 -1.004 4.026 1.00 48.77 N
ATOM 24 C4 G A1239 33.426 -1.765 4.357 1.00 48.71 C
ATOM 25 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 26 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 27 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 28 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
TER
ATOM 1 O3' G B1130 42.193 1.023 -1.623 1.00 52.16 O
ATOM 2 P C B1131 41.334 2.378 -1.455 1.00 50.74 P
ATOM 3 OP1 C B1131 40.263 2.315 -2.475 1.00 51.24 O
ATOM 4 OP2 C B1131 42.278 3.538 -1.476 1.00 50.75 O
ATOM 5 O5' C B1131 40.703 2.205 -0.031 1.00 50.18 O
ATOM 6 C5' C B1131 39.921 1.073 0.229 1.00 50.07 C
ATOM 7 C4' C B1131 39.539 1.012 1.656 1.00 49.51 C
ATOM 8 O4' C B1131 40.696 0.700 2.458 1.00 49.11 O
ATOM 9 C3' C B1131 39.008 2.297 2.240 1.00 49.37 C
ATOM 10 O3' C B1131 37.648 2.466 1.953 1.00 49.59 O
ATOM 11 C2' C B1131 39.259 2.089 3.703 1.00 48.77 C
ATOM 12 O2' C B1131 38.295 1.183 4.214 1.00 48.59 O
ATOM 13 C1' C B1131 40.616 1.385 3.680 1.00 48.66 C
ATOM 14 N1 C B1131 41.749 2.346 3.758 1.00 48.61 N
ATOM 15 C2 C B1131 42.101 2.881 4.973 1.00 48.15 C
ATOM 16 O2 C B1131 41.443 2.515 5.924 1.00 47.81 O
ATOM 17 N3 C B1131 43.109 3.758 5.135 1.00 48.09 N
ATOM 18 C4 C B1131 43.779 4.117 4.058 1.00 48.49 C
ATOM 19 N4 C B1131 44.781 4.982 4.182 1.00 48.45 N
ATOM 20 C5 C B1131 43.442 3.600 2.776 1.00 48.97 C
ATOM 21 C6 C B1131 42.443 2.731 2.668 1.00 49.02 C
ATOM 22 P U B1132 36.974 3.912 1.941 1.00 44.93 P
ATOM 23 OP1 U B1132 35.541 3.682 1.749 1.00 45.11 O
ATOM 24 OP2 U B1132 37.708 4.729 0.941 1.00 45.33 O
ATOM 25 O5' U B1132 37.236 4.475 3.399 1.00 44.36 O
TER
Atoms:
OP1: (33.832,-9.770,8.321)
OP2: (32.302,-7.963,9.246)
C3': (35.119,-3.652,7.739)
C1': (34.771,-3.652,5.392)
C5': (34.043,-5.981,8.034)
O6: (30.669,0.187,3.115)
O4': (34.476,-4.954,5.873)
C8: (32.208,-3.397,5.120)
C2: (34.127,0.119,3.417)
C6: (31.733,-0.303,3.468)
C5: (32.089,-1.519,4.135)
C4: (33.426,-1.765,4.357)
P: (33.193,-8.461,8.159)
C4': (34.976,-5.092,7.242)
C2': (35.530,-2.901,6.488)
O2': (36.900,-3.084,6.255)
N1: (32.835,0.457,3.162)
N2: (35.021,1.027,2.989)
N3: (34.478,-1.004,4.026)
N7: (31.346,-2.563,4.621)
N9: (33.508,-2.972,4.996)
O5': (34.279,-7.361,7.787)
O3': (36.047,-3.512,8.796)
OP2: (32.302,-7.963,9.246)
C3': (35.119,-3.652,7.739)
C1': (34.771,-3.652,5.392)
C5': (34.043,-5.981,8.034)
O6: (30.669,0.187,3.115)
O4': (34.476,-4.954,5.873)
C8: (32.208,-3.397,5.120)
C2: (34.127,0.119,3.417)
C6: (31.733,-0.303,3.468)
C5: (32.089,-1.519,4.135)
C4: (33.426,-1.765,4.357)
P: (33.193,-8.461,8.159)
C4': (34.976,-5.092,7.242)
C2': (35.530,-2.901,6.488)
O2': (36.900,-3.084,6.255)
N1: (32.835,0.457,3.162)
N2: (35.021,1.027,2.989)
N3: (34.478,-1.004,4.026)
N7: (31.346,-2.563,4.621)
N9: (33.508,-2.972,4.996)
O5': (34.279,-7.361,7.787)
O3': (36.047,-3.512,8.796)
C2: (42.101,2.881,4.973)
OP1: (40.263,2.315,-2.475)
OP2: (42.278,3.538,-1.476)
C4: (43.779,4.117,4.058)
O5': (40.703,2.205,-0.031)
C3': (39.008,2.297,2.240)
C1': (40.616,1.385,3.680)
O4': (40.696,0.700,2.458)
C5': (39.921,1.073,0.229)
P: (41.334,2.378,-1.455)
O2: (41.443,2.515,5.924)
C4': (39.539,1.012,1.656)
C2': (39.259,2.089,3.703)
O2': (38.295,1.183,4.214)
N1: (41.749,2.346,3.758)
N3: (43.109,3.758,5.135)
N4: (44.781,4.982,4.182)
C6: (42.443,2.731,2.668)
C5: (43.442,3.600,2.776)
O3': (37.648,2.466,1.953)
OP1: (40.263,2.315,-2.475)
OP2: (42.278,3.538,-1.476)
C4: (43.779,4.117,4.058)
O5': (40.703,2.205,-0.031)
C3': (39.008,2.297,2.240)
C1': (40.616,1.385,3.680)
O4': (40.696,0.700,2.458)
C5': (39.921,1.073,0.229)
P: (41.334,2.378,-1.455)
O2: (41.443,2.515,5.924)
C4': (39.539,1.012,1.656)
C2': (39.259,2.089,3.703)
O2': (38.295,1.183,4.214)
N1: (41.749,2.346,3.758)
N3: (43.109,3.758,5.135)
N4: (44.781,4.982,4.182)
C6: (42.443,2.731,2.668)
C5: (43.442,3.600,2.776)
O3': (37.648,2.466,1.953)
Image (generated by PyMOL):