Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12371:12213
Extra
PDB:
ATOM 1 O3' G A2370 25.488 -15.383 55.285 1.00 39.24 O
ATOM 2 P G A2371 24.671 -14.418 56.289 1.00 44.19 P
ATOM 3 OP1 G A2371 23.309 -14.982 56.484 1.00 44.32 O
ATOM 4 OP2 G A2371 24.837 -13.018 55.771 1.00 44.18 O
ATOM 5 O5' G A2371 25.486 -14.597 57.627 1.00 44.04 O
ATOM 6 C5' G A2371 26.869 -14.450 57.675 1.00 43.92 C
ATOM 7 C4' G A2371 27.225 -13.780 58.945 1.00 43.80 C
ATOM 8 O4' G A2371 26.758 -12.412 58.897 1.00 43.80 O
ATOM 9 C3' G A2371 26.553 -14.356 60.183 1.00 43.80 C
ATOM 10 O3' G A2371 27.209 -15.494 60.685 1.00 43.77 O
ATOM 11 C2' G A2371 26.523 -13.161 61.147 1.00 43.73 C
ATOM 12 O2' G A2371 27.790 -12.932 61.806 1.00 43.61 O
ATOM 13 C1' G A2371 26.264 -12.024 60.163 1.00 43.77 C
ATOM 14 N9 G A2371 24.836 -11.730 60.026 1.00 43.89 N
ATOM 15 C8 G A2371 24.094 -11.886 58.891 1.00 44.01 C
ATOM 16 N7 G A2371 22.891 -11.468 59.070 1.00 44.11 N
ATOM 17 C5 G A2371 22.835 -11.016 60.376 1.00 44.04 C
ATOM 18 C6 G A2371 21.776 -10.469 61.131 1.00 44.10 C
ATOM 19 O6 G A2371 20.625 -10.273 60.789 1.00 44.23 O
ATOM 20 N1 G A2371 22.115 -10.150 62.428 1.00 44.02 N
ATOM 21 C2 G A2371 23.375 -10.320 62.940 1.00 43.89 C
ATOM 22 N2 G A2371 23.542 -9.927 64.223 1.00 43.84 N
ATOM 23 N3 G A2371 24.379 -10.820 62.230 1.00 43.83 N
ATOM 24 C4 G A2371 24.041 -11.163 60.978 1.00 43.91 C
ATOM 25 P G A2372 26.418 -16.857 60.912 1.00 43.31 P
ATOM 26 OP1 G A2372 27.410 -17.929 61.163 1.00 43.28 O
ATOM 27 OP2 G A2372 25.508 -17.010 59.794 1.00 43.44 O
ATOM 28 O5' G A2372 25.602 -16.555 62.222 1.00 43.30 O
TER
ATOM 1 O3' C B2212 23.380 -4.304 70.563 1.00 63.43 O
ATOM 2 P C B2213 23.474 -5.873 70.262 1.00 40.39 P
ATOM 3 OP1 C B2213 22.105 -6.432 70.379 1.00 40.50 O
ATOM 4 OP2 C B2213 24.556 -6.433 71.144 1.00 40.31 O
ATOM 5 O5' C B2213 23.936 -5.902 68.745 1.00 40.33 O
ATOM 6 C5' C B2213 23.347 -6.772 67.822 1.00 40.36 C
ATOM 7 C4' C B2213 24.355 -7.260 66.819 1.00 40.27 C
ATOM 8 O4' C B2213 25.309 -6.220 66.539 1.00 40.21 O
ATOM 9 C3' C B2213 25.209 -8.408 67.262 1.00 40.18 C
ATOM 10 O3' C B2213 24.548 -9.637 67.154 1.00 40.23 O
ATOM 11 C2' C B2213 26.421 -8.296 66.368 1.00 40.09 C
ATOM 12 O2' C B2213 26.167 -8.899 65.132 1.00 40.12 O
ATOM 13 C1' C B2213 26.522 -6.788 66.154 1.00 40.11 C
ATOM 14 N1 C B2213 27.574 -6.208 66.957 1.00 40.04 N
ATOM 15 C2 C B2213 28.889 -6.287 66.458 1.00 39.95 C
ATOM 16 O2 C B2213 29.065 -6.820 65.341 1.00 39.94 O
ATOM 17 N3 C B2213 29.905 -5.797 67.215 1.00 39.90 N
ATOM 18 C4 C B2213 29.606 -5.258 68.412 1.00 39.94 C
ATOM 19 N4 C B2213 30.566 -4.750 69.170 1.00 39.91 N
ATOM 20 C5 C B2213 28.258 -5.208 68.890 1.00 40.03 C
ATOM 21 C6 C B2213 27.261 -5.685 68.147 1.00 40.08 C
ATOM 22 P C B2214 24.776 -10.741 68.290 1.00 35.69 P
ATOM 23 OP1 C B2214 23.608 -11.624 68.274 1.00 35.79 O
ATOM 24 OP2 C B2214 25.104 -10.008 69.564 1.00 35.67 O
ATOM 25 O5' C B2214 26.059 -11.543 67.747 1.00 35.60 O
TER
ATOM 2 P G A2371 24.671 -14.418 56.289 1.00 44.19 P
ATOM 3 OP1 G A2371 23.309 -14.982 56.484 1.00 44.32 O
ATOM 4 OP2 G A2371 24.837 -13.018 55.771 1.00 44.18 O
ATOM 5 O5' G A2371 25.486 -14.597 57.627 1.00 44.04 O
ATOM 6 C5' G A2371 26.869 -14.450 57.675 1.00 43.92 C
ATOM 7 C4' G A2371 27.225 -13.780 58.945 1.00 43.80 C
ATOM 8 O4' G A2371 26.758 -12.412 58.897 1.00 43.80 O
ATOM 9 C3' G A2371 26.553 -14.356 60.183 1.00 43.80 C
ATOM 10 O3' G A2371 27.209 -15.494 60.685 1.00 43.77 O
ATOM 11 C2' G A2371 26.523 -13.161 61.147 1.00 43.73 C
ATOM 12 O2' G A2371 27.790 -12.932 61.806 1.00 43.61 O
ATOM 13 C1' G A2371 26.264 -12.024 60.163 1.00 43.77 C
ATOM 14 N9 G A2371 24.836 -11.730 60.026 1.00 43.89 N
ATOM 15 C8 G A2371 24.094 -11.886 58.891 1.00 44.01 C
ATOM 16 N7 G A2371 22.891 -11.468 59.070 1.00 44.11 N
ATOM 17 C5 G A2371 22.835 -11.016 60.376 1.00 44.04 C
ATOM 18 C6 G A2371 21.776 -10.469 61.131 1.00 44.10 C
ATOM 19 O6 G A2371 20.625 -10.273 60.789 1.00 44.23 O
ATOM 20 N1 G A2371 22.115 -10.150 62.428 1.00 44.02 N
ATOM 21 C2 G A2371 23.375 -10.320 62.940 1.00 43.89 C
ATOM 22 N2 G A2371 23.542 -9.927 64.223 1.00 43.84 N
ATOM 23 N3 G A2371 24.379 -10.820 62.230 1.00 43.83 N
ATOM 24 C4 G A2371 24.041 -11.163 60.978 1.00 43.91 C
ATOM 25 P G A2372 26.418 -16.857 60.912 1.00 43.31 P
ATOM 26 OP1 G A2372 27.410 -17.929 61.163 1.00 43.28 O
ATOM 27 OP2 G A2372 25.508 -17.010 59.794 1.00 43.44 O
ATOM 28 O5' G A2372 25.602 -16.555 62.222 1.00 43.30 O
TER
ATOM 1 O3' C B2212 23.380 -4.304 70.563 1.00 63.43 O
ATOM 2 P C B2213 23.474 -5.873 70.262 1.00 40.39 P
ATOM 3 OP1 C B2213 22.105 -6.432 70.379 1.00 40.50 O
ATOM 4 OP2 C B2213 24.556 -6.433 71.144 1.00 40.31 O
ATOM 5 O5' C B2213 23.936 -5.902 68.745 1.00 40.33 O
ATOM 6 C5' C B2213 23.347 -6.772 67.822 1.00 40.36 C
ATOM 7 C4' C B2213 24.355 -7.260 66.819 1.00 40.27 C
ATOM 8 O4' C B2213 25.309 -6.220 66.539 1.00 40.21 O
ATOM 9 C3' C B2213 25.209 -8.408 67.262 1.00 40.18 C
ATOM 10 O3' C B2213 24.548 -9.637 67.154 1.00 40.23 O
ATOM 11 C2' C B2213 26.421 -8.296 66.368 1.00 40.09 C
ATOM 12 O2' C B2213 26.167 -8.899 65.132 1.00 40.12 O
ATOM 13 C1' C B2213 26.522 -6.788 66.154 1.00 40.11 C
ATOM 14 N1 C B2213 27.574 -6.208 66.957 1.00 40.04 N
ATOM 15 C2 C B2213 28.889 -6.287 66.458 1.00 39.95 C
ATOM 16 O2 C B2213 29.065 -6.820 65.341 1.00 39.94 O
ATOM 17 N3 C B2213 29.905 -5.797 67.215 1.00 39.90 N
ATOM 18 C4 C B2213 29.606 -5.258 68.412 1.00 39.94 C
ATOM 19 N4 C B2213 30.566 -4.750 69.170 1.00 39.91 N
ATOM 20 C5 C B2213 28.258 -5.208 68.890 1.00 40.03 C
ATOM 21 C6 C B2213 27.261 -5.685 68.147 1.00 40.08 C
ATOM 22 P C B2214 24.776 -10.741 68.290 1.00 35.69 P
ATOM 23 OP1 C B2214 23.608 -11.624 68.274 1.00 35.79 O
ATOM 24 OP2 C B2214 25.104 -10.008 69.564 1.00 35.67 O
ATOM 25 O5' C B2214 26.059 -11.543 67.747 1.00 35.60 O
TER
Atoms:
OP1: (23.309,-14.982,56.484)
OP2: (24.837,-13.018,55.771)
C3': (26.553,-14.356,60.183)
C1': (26.264,-12.024,60.163)
C5': (26.869,-14.450,57.675)
O6: (20.625,-10.273,60.789)
O4': (26.758,-12.412,58.897)
C8: (24.094,-11.886,58.891)
C2: (23.375,-10.320,62.940)
C6: (21.776,-10.469,61.131)
C5: (22.835,-11.016,60.376)
C4: (24.041,-11.163,60.978)
P: (24.671,-14.418,56.289)
C4': (27.225,-13.780,58.945)
C2': (26.523,-13.161,61.147)
O2': (27.790,-12.932,61.806)
N1: (22.115,-10.150,62.428)
N2: (23.542,-9.927,64.223)
N3: (24.379,-10.820,62.230)
N7: (22.891,-11.468,59.070)
N9: (24.836,-11.730,60.026)
O5': (25.486,-14.597,57.627)
O3': (27.209,-15.494,60.685)
OP2: (24.837,-13.018,55.771)
C3': (26.553,-14.356,60.183)
C1': (26.264,-12.024,60.163)
C5': (26.869,-14.450,57.675)
O6: (20.625,-10.273,60.789)
O4': (26.758,-12.412,58.897)
C8: (24.094,-11.886,58.891)
C2: (23.375,-10.320,62.940)
C6: (21.776,-10.469,61.131)
C5: (22.835,-11.016,60.376)
C4: (24.041,-11.163,60.978)
P: (24.671,-14.418,56.289)
C4': (27.225,-13.780,58.945)
C2': (26.523,-13.161,61.147)
O2': (27.790,-12.932,61.806)
N1: (22.115,-10.150,62.428)
N2: (23.542,-9.927,64.223)
N3: (24.379,-10.820,62.230)
N7: (22.891,-11.468,59.070)
N9: (24.836,-11.730,60.026)
O5': (25.486,-14.597,57.627)
O3': (27.209,-15.494,60.685)
C2: (28.889,-6.287,66.458)
OP1: (22.105,-6.432,70.379)
OP2: (24.556,-6.433,71.144)
C4: (29.606,-5.258,68.412)
O5': (23.936,-5.902,68.745)
C3': (25.209,-8.408,67.262)
C1': (26.522,-6.788,66.154)
O4': (25.309,-6.220,66.539)
C5': (23.347,-6.772,67.822)
P: (23.474,-5.873,70.262)
O2: (29.065,-6.820,65.341)
C4': (24.355,-7.260,66.819)
C2': (26.421,-8.296,66.368)
O2': (26.167,-8.899,65.132)
N1: (27.574,-6.208,66.957)
N3: (29.905,-5.797,67.215)
N4: (30.566,-4.750,69.170)
C6: (27.261,-5.685,68.147)
C5: (28.258,-5.208,68.890)
O3': (24.548,-9.637,67.154)
OP1: (22.105,-6.432,70.379)
OP2: (24.556,-6.433,71.144)
C4: (29.606,-5.258,68.412)
O5': (23.936,-5.902,68.745)
C3': (25.209,-8.408,67.262)
C1': (26.522,-6.788,66.154)
O4': (25.309,-6.220,66.539)
C5': (23.347,-6.772,67.822)
P: (23.474,-5.873,70.262)
O2: (29.065,-6.820,65.341)
C4': (24.355,-7.260,66.819)
C2': (26.421,-8.296,66.368)
O2': (26.167,-8.899,65.132)
N1: (27.574,-6.208,66.957)
N3: (29.905,-5.797,67.215)
N4: (30.566,-4.750,69.170)
C6: (27.261,-5.685,68.147)
C5: (28.258,-5.208,68.890)
O3': (24.548,-9.637,67.154)
Image (generated by PyMOL):