Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J03:A1581:A1248
Extra
PDB:
ATOM 1 O3' U A1580 -20.471 -52.896 -9.824 1.00 4.88 O
ATOM 2 P C A1581 -20.068 -53.728 -8.497 1.00 16.67 P
ATOM 3 OP1 C A1581 -19.741 -55.101 -8.969 1.00 37.94 O
ATOM 4 OP2 C A1581 -21.123 -53.538 -7.473 1.00 37.94 O
ATOM 5 O5' C A1581 -18.724 -53.050 -7.982 1.00 17.02 O
ATOM 6 C5' C A1581 -18.761 -51.732 -7.451 1.00 17.02 C
ATOM 7 C4' C A1581 -17.414 -51.305 -6.930 1.00 17.02 C
ATOM 8 O4' C A1581 -17.563 -49.912 -6.553 1.00 17.02 O
ATOM 9 C3' C A1581 -16.951 -52.040 -5.674 1.00 17.02 C
ATOM 10 O3' C A1581 -16.081 -53.128 -6.027 1.00 17.02 O
ATOM 11 C2' C A1581 -16.219 -50.953 -4.887 1.00 17.02 C
ATOM 12 O2' C A1581 -14.877 -50.784 -5.289 1.00 17.02 O
ATOM 13 C1' C A1581 -16.995 -49.692 -5.281 1.00 17.02 C
ATOM 14 N1 C A1581 -18.078 -49.293 -4.354 1.00 24.38 N
ATOM 15 C2 C A1581 -17.749 -48.561 -3.199 1.00 24.38 C
ATOM 16 O2 C A1581 -16.545 -48.270 -2.979 1.00 24.38 O
ATOM 17 N3 C A1581 -18.743 -48.187 -2.351 1.00 24.38 N
ATOM 18 C4 C A1581 -20.006 -48.510 -2.619 1.00 24.38 C
ATOM 19 N4 C A1581 -20.937 -48.110 -1.762 1.00 24.38 N
ATOM 20 C5 C A1581 -20.366 -49.253 -3.778 1.00 24.38 C
ATOM 21 C6 C A1581 -19.383 -49.621 -4.608 1.00 24.38 C
ATOM 22 P A A1582 -15.941 -54.413 -5.060 1.00 50.93 P
ATOM 23 OP1 A A1582 -14.652 -55.072 -5.394 1.00 41.58 O
ATOM 24 OP2 A A1582 -17.198 -55.198 -5.120 1.00 41.58 O
ATOM 25 O5' A A1582 -15.803 -53.798 -3.600 1.00 28.71 O
TER
ATOM 1 O3' C B1247 -30.435 -50.524 -2.932 1.00 14.52 O
ATOM 2 P G B1248 -30.160 -49.206 -3.805 1.00 3.32 P
ATOM 3 OP1 G B1248 -31.118 -48.226 -3.291 1.00 3.32 O
ATOM 4 OP2 G B1248 -30.150 -49.506 -5.248 1.00 3.32 O
ATOM 5 O5' G B1248 -28.694 -48.770 -3.383 1.00 18.59 O
ATOM 6 C5' G B1248 -28.420 -48.341 -2.044 1.00 18.59 C
ATOM 7 C4' G B1248 -26.939 -48.395 -1.780 1.00 18.59 C
ATOM 8 O4' G B1248 -26.500 -49.773 -1.792 1.00 18.59 O
ATOM 9 C3' G B1248 -26.100 -47.696 -2.834 1.00 18.59 C
ATOM 10 O3' G B1248 -25.939 -46.323 -2.515 1.00 18.59 O
ATOM 11 C2' G B1248 -24.785 -48.460 -2.758 1.00 18.59 C
ATOM 12 O2' G B1248 -23.997 -48.066 -1.653 1.00 18.59 O
ATOM 13 C1' G B1248 -25.271 -49.879 -2.485 1.00 18.59 C
ATOM 14 N9 G B1248 -25.527 -50.615 -3.718 1.00 20.01 N
ATOM 15 C8 G B1248 -26.742 -50.745 -4.340 1.00 20.01 C
ATOM 16 N7 G B1248 -26.695 -51.487 -5.404 1.00 20.01 N
ATOM 17 C5 G B1248 -25.368 -51.863 -5.500 1.00 20.01 C
ATOM 18 C6 G B1248 -24.734 -52.676 -6.450 1.00 20.01 C
ATOM 19 O6 G B1248 -25.249 -53.269 -7.423 1.00 20.01 O
ATOM 20 N1 G B1248 -23.369 -52.789 -6.190 1.00 20.01 N
ATOM 21 C2 G B1248 -22.719 -52.202 -5.136 1.00 20.01 C
ATOM 22 N2 G B1248 -21.406 -52.429 -5.059 1.00 20.01 N
ATOM 23 N3 G B1248 -23.314 -51.449 -4.230 1.00 20.01 N
ATOM 24 C4 G B1248 -24.629 -51.322 -4.473 1.00 20.01 C
ATOM 25 P U B1249 -27.029 -45.252 -3.014 1.00 35.79 P
ATOM 26 OP1 U B1249 -28.035 -45.913 -3.896 1.00 43.72 O
ATOM 27 OP2 U B1249 -26.236 -44.098 -3.532 1.00 43.72 O
ATOM 28 O5' U B1249 -27.786 -44.845 -1.670 1.00 33.89 O
TER
ATOM 2 P C A1581 -20.068 -53.728 -8.497 1.00 16.67 P
ATOM 3 OP1 C A1581 -19.741 -55.101 -8.969 1.00 37.94 O
ATOM 4 OP2 C A1581 -21.123 -53.538 -7.473 1.00 37.94 O
ATOM 5 O5' C A1581 -18.724 -53.050 -7.982 1.00 17.02 O
ATOM 6 C5' C A1581 -18.761 -51.732 -7.451 1.00 17.02 C
ATOM 7 C4' C A1581 -17.414 -51.305 -6.930 1.00 17.02 C
ATOM 8 O4' C A1581 -17.563 -49.912 -6.553 1.00 17.02 O
ATOM 9 C3' C A1581 -16.951 -52.040 -5.674 1.00 17.02 C
ATOM 10 O3' C A1581 -16.081 -53.128 -6.027 1.00 17.02 O
ATOM 11 C2' C A1581 -16.219 -50.953 -4.887 1.00 17.02 C
ATOM 12 O2' C A1581 -14.877 -50.784 -5.289 1.00 17.02 O
ATOM 13 C1' C A1581 -16.995 -49.692 -5.281 1.00 17.02 C
ATOM 14 N1 C A1581 -18.078 -49.293 -4.354 1.00 24.38 N
ATOM 15 C2 C A1581 -17.749 -48.561 -3.199 1.00 24.38 C
ATOM 16 O2 C A1581 -16.545 -48.270 -2.979 1.00 24.38 O
ATOM 17 N3 C A1581 -18.743 -48.187 -2.351 1.00 24.38 N
ATOM 18 C4 C A1581 -20.006 -48.510 -2.619 1.00 24.38 C
ATOM 19 N4 C A1581 -20.937 -48.110 -1.762 1.00 24.38 N
ATOM 20 C5 C A1581 -20.366 -49.253 -3.778 1.00 24.38 C
ATOM 21 C6 C A1581 -19.383 -49.621 -4.608 1.00 24.38 C
ATOM 22 P A A1582 -15.941 -54.413 -5.060 1.00 50.93 P
ATOM 23 OP1 A A1582 -14.652 -55.072 -5.394 1.00 41.58 O
ATOM 24 OP2 A A1582 -17.198 -55.198 -5.120 1.00 41.58 O
ATOM 25 O5' A A1582 -15.803 -53.798 -3.600 1.00 28.71 O
TER
ATOM 1 O3' C B1247 -30.435 -50.524 -2.932 1.00 14.52 O
ATOM 2 P G B1248 -30.160 -49.206 -3.805 1.00 3.32 P
ATOM 3 OP1 G B1248 -31.118 -48.226 -3.291 1.00 3.32 O
ATOM 4 OP2 G B1248 -30.150 -49.506 -5.248 1.00 3.32 O
ATOM 5 O5' G B1248 -28.694 -48.770 -3.383 1.00 18.59 O
ATOM 6 C5' G B1248 -28.420 -48.341 -2.044 1.00 18.59 C
ATOM 7 C4' G B1248 -26.939 -48.395 -1.780 1.00 18.59 C
ATOM 8 O4' G B1248 -26.500 -49.773 -1.792 1.00 18.59 O
ATOM 9 C3' G B1248 -26.100 -47.696 -2.834 1.00 18.59 C
ATOM 10 O3' G B1248 -25.939 -46.323 -2.515 1.00 18.59 O
ATOM 11 C2' G B1248 -24.785 -48.460 -2.758 1.00 18.59 C
ATOM 12 O2' G B1248 -23.997 -48.066 -1.653 1.00 18.59 O
ATOM 13 C1' G B1248 -25.271 -49.879 -2.485 1.00 18.59 C
ATOM 14 N9 G B1248 -25.527 -50.615 -3.718 1.00 20.01 N
ATOM 15 C8 G B1248 -26.742 -50.745 -4.340 1.00 20.01 C
ATOM 16 N7 G B1248 -26.695 -51.487 -5.404 1.00 20.01 N
ATOM 17 C5 G B1248 -25.368 -51.863 -5.500 1.00 20.01 C
ATOM 18 C6 G B1248 -24.734 -52.676 -6.450 1.00 20.01 C
ATOM 19 O6 G B1248 -25.249 -53.269 -7.423 1.00 20.01 O
ATOM 20 N1 G B1248 -23.369 -52.789 -6.190 1.00 20.01 N
ATOM 21 C2 G B1248 -22.719 -52.202 -5.136 1.00 20.01 C
ATOM 22 N2 G B1248 -21.406 -52.429 -5.059 1.00 20.01 N
ATOM 23 N3 G B1248 -23.314 -51.449 -4.230 1.00 20.01 N
ATOM 24 C4 G B1248 -24.629 -51.322 -4.473 1.00 20.01 C
ATOM 25 P U B1249 -27.029 -45.252 -3.014 1.00 35.79 P
ATOM 26 OP1 U B1249 -28.035 -45.913 -3.896 1.00 43.72 O
ATOM 27 OP2 U B1249 -26.236 -44.098 -3.532 1.00 43.72 O
ATOM 28 O5' U B1249 -27.786 -44.845 -1.670 1.00 33.89 O
TER
Atoms:
C2: (-17.749,-48.561,-3.199)
OP1: (-19.741,-55.101,-8.969)
OP2: (-21.123,-53.538,-7.473)
C4: (-20.006,-48.510,-2.619)
O5': (-18.724,-53.050,-7.982)
C3': (-16.951,-52.040,-5.674)
C1': (-16.995,-49.692,-5.281)
O4': (-17.563,-49.912,-6.553)
C5': (-18.761,-51.732,-7.451)
P: (-20.068,-53.728,-8.497)
O2: (-16.545,-48.270,-2.979)
C4': (-17.414,-51.305,-6.930)
C2': (-16.219,-50.953,-4.887)
O2': (-14.877,-50.784,-5.289)
N1: (-18.078,-49.293,-4.354)
N3: (-18.743,-48.187,-2.351)
N4: (-20.937,-48.110,-1.762)
C6: (-19.383,-49.621,-4.608)
C5: (-20.366,-49.253,-3.778)
O3': (-16.081,-53.128,-6.027)
OP1: (-19.741,-55.101,-8.969)
OP2: (-21.123,-53.538,-7.473)
C4: (-20.006,-48.510,-2.619)
O5': (-18.724,-53.050,-7.982)
C3': (-16.951,-52.040,-5.674)
C1': (-16.995,-49.692,-5.281)
O4': (-17.563,-49.912,-6.553)
C5': (-18.761,-51.732,-7.451)
P: (-20.068,-53.728,-8.497)
O2: (-16.545,-48.270,-2.979)
C4': (-17.414,-51.305,-6.930)
C2': (-16.219,-50.953,-4.887)
O2': (-14.877,-50.784,-5.289)
N1: (-18.078,-49.293,-4.354)
N3: (-18.743,-48.187,-2.351)
N4: (-20.937,-48.110,-1.762)
C6: (-19.383,-49.621,-4.608)
C5: (-20.366,-49.253,-3.778)
O3': (-16.081,-53.128,-6.027)
OP1: (-31.118,-48.226,-3.291)
OP2: (-30.150,-49.506,-5.248)
C3': (-26.100,-47.696,-2.834)
C1': (-25.271,-49.879,-2.485)
C5': (-28.420,-48.341,-2.044)
O6: (-25.249,-53.269,-7.423)
O4': (-26.500,-49.773,-1.792)
C8: (-26.742,-50.745,-4.340)
C2: (-22.719,-52.202,-5.136)
C6: (-24.734,-52.676,-6.450)
C5: (-25.368,-51.863,-5.500)
C4: (-24.629,-51.322,-4.473)
P: (-30.160,-49.206,-3.805)
C4': (-26.939,-48.395,-1.780)
C2': (-24.785,-48.460,-2.758)
O2': (-23.997,-48.066,-1.653)
N1: (-23.369,-52.789,-6.190)
N2: (-21.406,-52.429,-5.059)
N3: (-23.314,-51.449,-4.230)
N7: (-26.695,-51.487,-5.404)
N9: (-25.527,-50.615,-3.718)
O5': (-28.694,-48.770,-3.383)
O3': (-25.939,-46.323,-2.515)
OP2: (-30.150,-49.506,-5.248)
C3': (-26.100,-47.696,-2.834)
C1': (-25.271,-49.879,-2.485)
C5': (-28.420,-48.341,-2.044)
O6: (-25.249,-53.269,-7.423)
O4': (-26.500,-49.773,-1.792)
C8: (-26.742,-50.745,-4.340)
C2: (-22.719,-52.202,-5.136)
C6: (-24.734,-52.676,-6.450)
C5: (-25.368,-51.863,-5.500)
C4: (-24.629,-51.322,-4.473)
P: (-30.160,-49.206,-3.805)
C4': (-26.939,-48.395,-1.780)
C2': (-24.785,-48.460,-2.758)
O2': (-23.997,-48.066,-1.653)
N1: (-23.369,-52.789,-6.190)
N2: (-21.406,-52.429,-5.059)
N3: (-23.314,-51.449,-4.230)
N7: (-26.695,-51.487,-5.404)
N9: (-25.527,-50.615,-3.718)
O5': (-28.694,-48.770,-3.383)
O3': (-25.939,-46.323,-2.515)
Image (generated by PyMOL):