Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11967:11981
Extra
PDB:
ATOM 1 O3' U A1966 4.935 -20.861 123.165 1.00 81.13 O
ATOM 2 P G A1967 5.616 -20.083 121.970 1.00 53.66 P
ATOM 3 OP1 G A1967 5.930 -21.093 120.925 1.00 53.32 O
ATOM 4 OP2 G A1967 6.737 -19.276 122.542 1.00 53.68 O
ATOM 5 O5' G A1967 4.445 -19.123 121.484 1.00 53.61 O
ATOM 6 C5' G A1967 3.275 -19.652 120.893 1.00 53.60 C
ATOM 7 C4' G A1967 2.505 -18.589 120.165 1.00 53.44 C
ATOM 8 O4' G A1967 2.272 -17.475 121.041 1.00 53.72 O
ATOM 9 C3' G A1967 3.196 -17.966 118.985 1.00 52.96 C
ATOM 10 O3' G A1967 3.137 -18.781 117.833 1.00 52.64 O
ATOM 11 C2' G A1967 2.461 -16.649 118.838 1.00 52.99 C
ATOM 12 O2' G A1967 1.198 -16.866 118.237 1.00 52.99 O
ATOM 13 C1' G A1967 2.222 -16.285 120.292 1.00 53.47 C
ATOM 14 N9 G A1967 3.225 -15.351 120.832 1.00 53.49 N
ATOM 15 C8 G A1967 4.184 -15.728 121.722 1.00 53.65 C
ATOM 16 N7 G A1967 4.958 -14.762 122.107 1.00 53.67 N
ATOM 17 C5 G A1967 4.456 -13.683 121.454 1.00 53.52 C
ATOM 18 C6 G A1967 4.923 -12.381 121.524 1.00 53.49 C
ATOM 19 O6 G A1967 5.850 -11.966 122.191 1.00 53.59 O
ATOM 20 N1 G A1967 4.193 -11.526 120.749 1.00 53.34 N
ATOM 21 C2 G A1967 3.133 -11.896 119.977 1.00 53.24 C
ATOM 22 N2 G A1967 2.599 -10.873 119.295 1.00 53.11 N
ATOM 23 N3 G A1967 2.667 -13.139 119.891 1.00 53.26 N
ATOM 24 C4 G A1967 3.377 -13.991 120.670 1.00 53.41 C
ATOM 25 P G A1968 4.137 -18.512 116.606 1.00 50.07 P
ATOM 26 OP1 G A1968 3.991 -19.637 115.685 1.00 49.86 O
ATOM 27 OP2 G A1968 5.479 -18.202 117.184 1.00 50.06 O
ATOM 28 O5' G A1968 3.540 -17.213 115.939 1.00 49.93 O
TER
ATOM 1 O3' U B1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 2 P G B1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 3 OP1 G B1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 4 OP2 G B1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 5 O5' G B1981 7.386 -1.509 121.512 1.00 48.48 O
ATOM 6 C5' G B1981 7.145 -1.020 122.827 1.00 48.99 C
ATOM 7 C4' G B1981 7.467 -2.047 123.884 1.00 49.23 C
ATOM 8 O4' G B1981 6.605 -3.213 123.726 1.00 49.20 O
ATOM 9 C3' G B1981 8.891 -2.573 123.878 1.00 49.03 C
ATOM 10 O3' G B1981 9.277 -2.806 125.220 1.00 49.44 O
ATOM 11 C2' G B1981 8.756 -3.909 123.149 1.00 48.70 C
ATOM 12 O2' G B1981 9.765 -4.839 123.436 1.00 48.63 O
ATOM 13 C1' G B1981 7.398 -4.388 123.646 1.00 49.00 C
ATOM 14 N9 G B1981 6.724 -5.353 122.746 1.00 48.72 N
ATOM 15 C8 G B1981 5.957 -5.058 121.630 1.00 48.46 C
ATOM 16 N7 G B1981 5.471 -6.077 120.971 1.00 48.26 N
ATOM 17 C5 G B1981 5.943 -7.130 121.687 1.00 48.38 C
ATOM 18 C6 G B1981 5.715 -8.492 121.448 1.00 48.28 C
ATOM 19 O6 G B1981 5.085 -9.010 120.538 1.00 48.05 O
ATOM 20 N1 G B1981 6.316 -9.268 122.411 1.00 48.50 N
ATOM 21 C2 G B1981 7.039 -8.757 123.434 1.00 48.77 C
ATOM 22 N2 G B1981 7.517 -9.684 124.217 1.00 48.96 N
ATOM 23 N3 G B1981 7.273 -7.492 123.694 1.00 48.88 N
ATOM 24 C4 G B1981 6.696 -6.723 122.777 1.00 48.67 C
ATOM 25 P U B1982 9.919 -1.631 126.113 1.00 48.05 P
ATOM 26 OP1 U B1982 10.525 -0.651 125.199 1.00 47.73 O
ATOM 27 OP2 U B1982 10.765 -2.304 127.098 1.00 48.27 O
ATOM 28 O5' U B1982 8.689 -0.970 126.847 1.00 48.50 O
TER
ATOM 2 P G A1967 5.616 -20.083 121.970 1.00 53.66 P
ATOM 3 OP1 G A1967 5.930 -21.093 120.925 1.00 53.32 O
ATOM 4 OP2 G A1967 6.737 -19.276 122.542 1.00 53.68 O
ATOM 5 O5' G A1967 4.445 -19.123 121.484 1.00 53.61 O
ATOM 6 C5' G A1967 3.275 -19.652 120.893 1.00 53.60 C
ATOM 7 C4' G A1967 2.505 -18.589 120.165 1.00 53.44 C
ATOM 8 O4' G A1967 2.272 -17.475 121.041 1.00 53.72 O
ATOM 9 C3' G A1967 3.196 -17.966 118.985 1.00 52.96 C
ATOM 10 O3' G A1967 3.137 -18.781 117.833 1.00 52.64 O
ATOM 11 C2' G A1967 2.461 -16.649 118.838 1.00 52.99 C
ATOM 12 O2' G A1967 1.198 -16.866 118.237 1.00 52.99 O
ATOM 13 C1' G A1967 2.222 -16.285 120.292 1.00 53.47 C
ATOM 14 N9 G A1967 3.225 -15.351 120.832 1.00 53.49 N
ATOM 15 C8 G A1967 4.184 -15.728 121.722 1.00 53.65 C
ATOM 16 N7 G A1967 4.958 -14.762 122.107 1.00 53.67 N
ATOM 17 C5 G A1967 4.456 -13.683 121.454 1.00 53.52 C
ATOM 18 C6 G A1967 4.923 -12.381 121.524 1.00 53.49 C
ATOM 19 O6 G A1967 5.850 -11.966 122.191 1.00 53.59 O
ATOM 20 N1 G A1967 4.193 -11.526 120.749 1.00 53.34 N
ATOM 21 C2 G A1967 3.133 -11.896 119.977 1.00 53.24 C
ATOM 22 N2 G A1967 2.599 -10.873 119.295 1.00 53.11 N
ATOM 23 N3 G A1967 2.667 -13.139 119.891 1.00 53.26 N
ATOM 24 C4 G A1967 3.377 -13.991 120.670 1.00 53.41 C
ATOM 25 P G A1968 4.137 -18.512 116.606 1.00 50.07 P
ATOM 26 OP1 G A1968 3.991 -19.637 115.685 1.00 49.86 O
ATOM 27 OP2 G A1968 5.479 -18.202 117.184 1.00 50.06 O
ATOM 28 O5' G A1968 3.540 -17.213 115.939 1.00 49.93 O
TER
ATOM 1 O3' U B1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 2 P G B1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 3 OP1 G B1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 4 OP2 G B1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 5 O5' G B1981 7.386 -1.509 121.512 1.00 48.48 O
ATOM 6 C5' G B1981 7.145 -1.020 122.827 1.00 48.99 C
ATOM 7 C4' G B1981 7.467 -2.047 123.884 1.00 49.23 C
ATOM 8 O4' G B1981 6.605 -3.213 123.726 1.00 49.20 O
ATOM 9 C3' G B1981 8.891 -2.573 123.878 1.00 49.03 C
ATOM 10 O3' G B1981 9.277 -2.806 125.220 1.00 49.44 O
ATOM 11 C2' G B1981 8.756 -3.909 123.149 1.00 48.70 C
ATOM 12 O2' G B1981 9.765 -4.839 123.436 1.00 48.63 O
ATOM 13 C1' G B1981 7.398 -4.388 123.646 1.00 49.00 C
ATOM 14 N9 G B1981 6.724 -5.353 122.746 1.00 48.72 N
ATOM 15 C8 G B1981 5.957 -5.058 121.630 1.00 48.46 C
ATOM 16 N7 G B1981 5.471 -6.077 120.971 1.00 48.26 N
ATOM 17 C5 G B1981 5.943 -7.130 121.687 1.00 48.38 C
ATOM 18 C6 G B1981 5.715 -8.492 121.448 1.00 48.28 C
ATOM 19 O6 G B1981 5.085 -9.010 120.538 1.00 48.05 O
ATOM 20 N1 G B1981 6.316 -9.268 122.411 1.00 48.50 N
ATOM 21 C2 G B1981 7.039 -8.757 123.434 1.00 48.77 C
ATOM 22 N2 G B1981 7.517 -9.684 124.217 1.00 48.96 N
ATOM 23 N3 G B1981 7.273 -7.492 123.694 1.00 48.88 N
ATOM 24 C4 G B1981 6.696 -6.723 122.777 1.00 48.67 C
ATOM 25 P U B1982 9.919 -1.631 126.113 1.00 48.05 P
ATOM 26 OP1 U B1982 10.525 -0.651 125.199 1.00 47.73 O
ATOM 27 OP2 U B1982 10.765 -2.304 127.098 1.00 48.27 O
ATOM 28 O5' U B1982 8.689 -0.970 126.847 1.00 48.50 O
TER
Atoms:
OP1: (5.930,-21.093,120.925)
OP2: (6.737,-19.276,122.542)
C3': (3.196,-17.966,118.985)
C1': (2.222,-16.285,120.292)
C5': (3.275,-19.652,120.893)
O6: (5.850,-11.966,122.191)
O4': (2.272,-17.475,121.041)
C8: (4.184,-15.728,121.722)
C2: (3.133,-11.896,119.977)
C6: (4.923,-12.381,121.524)
C5: (4.456,-13.683,121.454)
C4: (3.377,-13.991,120.670)
P: (5.616,-20.083,121.970)
C4': (2.505,-18.589,120.165)
C2': (2.461,-16.649,118.838)
O2': (1.198,-16.866,118.237)
N1: (4.193,-11.526,120.749)
N2: (2.599,-10.873,119.295)
N3: (2.667,-13.139,119.891)
N7: (4.958,-14.762,122.107)
N9: (3.225,-15.351,120.832)
O5': (4.445,-19.123,121.484)
O3': (3.137,-18.781,117.833)
OP2: (6.737,-19.276,122.542)
C3': (3.196,-17.966,118.985)
C1': (2.222,-16.285,120.292)
C5': (3.275,-19.652,120.893)
O6: (5.850,-11.966,122.191)
O4': (2.272,-17.475,121.041)
C8: (4.184,-15.728,121.722)
C2: (3.133,-11.896,119.977)
C6: (4.923,-12.381,121.524)
C5: (4.456,-13.683,121.454)
C4: (3.377,-13.991,120.670)
P: (5.616,-20.083,121.970)
C4': (2.505,-18.589,120.165)
C2': (2.461,-16.649,118.838)
O2': (1.198,-16.866,118.237)
N1: (4.193,-11.526,120.749)
N2: (2.599,-10.873,119.295)
N3: (2.667,-13.139,119.891)
N7: (4.958,-14.762,122.107)
N9: (3.225,-15.351,120.832)
O5': (4.445,-19.123,121.484)
O3': (3.137,-18.781,117.833)
OP1: (5.194,-2.248,120.548)
OP2: (5.999,0.142,120.234)
C3': (8.891,-2.573,123.878)
C1': (7.398,-4.388,123.646)
C5': (7.145,-1.020,122.827)
O6: (5.085,-9.010,120.538)
O4': (6.605,-3.213,123.726)
C8: (5.957,-5.058,121.630)
C2: (7.039,-8.757,123.434)
C6: (5.715,-8.492,121.448)
C5: (5.943,-7.130,121.687)
C4: (6.696,-6.723,122.777)
P: (6.311,-1.294,120.373)
C4': (7.467,-2.047,123.884)
C2': (8.756,-3.909,123.149)
O2': (9.765,-4.839,123.436)
N1: (6.316,-9.268,122.411)
N2: (7.517,-9.684,124.217)
N3: (7.273,-7.492,123.694)
N7: (5.471,-6.077,120.971)
N9: (6.724,-5.353,122.746)
O5': (7.386,-1.509,121.512)
O3': (9.277,-2.806,125.220)
OP2: (5.999,0.142,120.234)
C3': (8.891,-2.573,123.878)
C1': (7.398,-4.388,123.646)
C5': (7.145,-1.020,122.827)
O6: (5.085,-9.010,120.538)
O4': (6.605,-3.213,123.726)
C8: (5.957,-5.058,121.630)
C2: (7.039,-8.757,123.434)
C6: (5.715,-8.492,121.448)
C5: (5.943,-7.130,121.687)
C4: (6.696,-6.723,122.777)
P: (6.311,-1.294,120.373)
C4': (7.467,-2.047,123.884)
C2': (8.756,-3.909,123.149)
O2': (9.765,-4.839,123.436)
N1: (6.316,-9.268,122.411)
N2: (7.517,-9.684,124.217)
N3: (7.273,-7.492,123.694)
N7: (5.471,-6.077,120.971)
N9: (6.724,-5.353,122.746)
O5': (7.386,-1.509,121.512)
O3': (9.277,-2.806,125.220)
Image (generated by PyMOL):