ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:11971:11977

Extra

PDB:
ATOM 1 O3' C A1970 14.012 -11.233 109.730 1.00 41.62 O
ATOM 2 P A A1971 15.143 -12.373 109.700 1.00 43.82 P
ATOM 3 OP1 A A1971 15.742 -12.367 108.377 1.00 43.43 O
ATOM 4 OP2 A A1971 14.491 -13.617 110.183 1.00 44.00 O
ATOM 5 O5' A A1971 16.226 -11.891 110.776 1.00 44.00 O
ATOM 6 C5' A A1971 16.643 -10.550 110.877 1.00 44.01 C
ATOM 7 C4' A A1971 17.364 -10.293 112.188 1.00 44.31 C
ATOM 8 O4' A A1971 16.509 -10.575 113.325 1.00 44.69 O
ATOM 9 C3' A A1971 18.565 -11.148 112.490 1.00 44.29 C
ATOM 10 O3' A A1971 19.693 -10.828 111.689 1.00 43.99 O
ATOM 11 C2' A A1971 18.754 -10.881 113.997 1.00 44.71 C
ATOM 12 O2' A A1971 19.337 -9.612 114.228 1.00 44.75 O
ATOM 13 C1' A A1971 17.312 -10.803 114.465 1.00 44.95 C
ATOM 14 N9 A A1971 16.884 -12.033 115.134 1.00 45.17 N
ATOM 15 C8 A A1971 15.976 -12.979 114.772 1.00 45.14 C
ATOM 16 N7 A A1971 15.866 -13.972 115.644 1.00 45.40 N
ATOM 17 C5 A A1971 16.751 -13.633 116.652 1.00 45.63 C
ATOM 18 C6 A A1971 17.098 -14.246 117.884 1.00 45.99 C
ATOM 19 N6 A A1971 16.592 -15.384 118.336 1.00 46.18 N
ATOM 20 N1 A A1971 18.025 -13.650 118.647 1.00 46.15 N
ATOM 21 C2 A A1971 18.536 -12.505 118.183 1.00 45.97 C
ATOM 22 N3 A A1971 18.294 -11.818 117.071 1.00 45.65 N
ATOM 23 C4 A A1971 17.379 -12.442 116.334 1.00 45.49 C
ATOM 24 P G A1972 20.665 -11.990 111.182 1.00 47.35 P
ATOM 25 OP1 G A1972 21.713 -11.345 110.387 1.00 47.07 O
ATOM 26 OP2 G A1972 19.865 -13.048 110.562 1.00 47.23 O
ATOM 27 O5' G A1972 21.255 -12.546 112.530 1.00 47.68 O
TER

ATOM 1 O3' G B1976 19.165 -15.945 129.188 1.00 90.85 O
ATOM 2 P U B1977 18.208 -15.479 127.955 1.00 61.69 P
ATOM 3 OP1 U B1977 16.926 -14.992 128.563 1.00 61.99 O
ATOM 4 OP2 U B1977 18.144 -16.621 126.965 1.00 61.34 O
ATOM 5 O5' U B1977 19.007 -14.225 127.316 1.00 61.39 O
ATOM 6 C5' U B1977 20.323 -14.372 126.802 1.00 61.12 C
ATOM 7 C4' U B1977 20.701 -13.298 125.794 1.00 60.73 C
ATOM 8 O4' U B1977 21.240 -13.933 124.615 1.00 60.28 O
ATOM 9 C3' U B1977 19.587 -12.406 125.266 1.00 60.60 C
ATOM 10 O3' U B1977 19.381 -11.271 126.057 1.00 60.91 O
ATOM 11 C2' U B1977 20.069 -12.044 123.883 1.00 60.08 C
ATOM 12 O2' U B1977 21.052 -11.023 123.954 1.00 60.06 O
ATOM 13 C1' U B1977 20.749 -13.320 123.460 1.00 59.89 C
ATOM 14 N1 U B1977 19.828 -14.265 122.773 1.00 59.71 N
ATOM 15 C2 U B1977 19.461 -13.926 121.519 1.00 59.31 C
ATOM 16 O2 U B1977 19.835 -12.896 121.034 1.00 59.12 O
ATOM 17 N3 U B1977 18.660 -14.787 120.835 1.00 59.14 N
ATOM 18 C4 U B1977 18.193 -15.986 121.278 1.00 59.33 C
ATOM 19 O4 U B1977 17.471 -16.644 120.538 1.00 59.15 O
ATOM 20 C5 U B1977 18.611 -16.298 122.607 1.00 59.76 C
ATOM 21 C6 U B1977 19.396 -15.459 123.287 1.00 59.93 C
ATOM 22 P G B1978 17.931 -10.598 126.132 1.00 55.83 P
ATOM 23 OP1 G B1978 18.044 -9.477 127.131 1.00 56.21 O
ATOM 24 OP2 G B1978 16.945 -11.699 126.386 1.00 55.97 O
ATOM 25 O5' G B1978 17.707 -10.014 124.659 1.00 55.32 O
TER

Atoms:
OP1: (15.742,-12.367,108.377)
OP2: (14.491,-13.617,110.183)
C3': (18.565,-11.148,112.490)
C1': (17.312,-10.803,114.465)
C5': (16.643,-10.550,110.877)
O4': (16.509,-10.575,113.325)
C8: (15.976,-12.979,114.772)
O2': (19.337,-9.612,114.228)
C6: (17.098,-14.246,117.884)
C5: (16.751,-13.633,116.652)
C4: (17.379,-12.442,116.334)
P: (15.143,-12.373,109.700)
C4': (17.364,-10.293,112.188)
C2': (18.754,-10.881,113.997)
C2: (18.536,-12.505,118.183)
N1: (18.025,-13.650,118.647)
N3: (18.294,-11.818,117.071)
N6: (16.592,-15.384,118.336)
N7: (15.866,-13.972,115.644)
N9: (16.884,-12.033,115.134)
O5': (16.226,-11.891,110.776)
O3': (19.693,-10.828,111.689)
C4: (18.193,-15.986,121.278)
N3: (18.660,-14.787,120.835)
OP1: (16.926,-14.992,128.563)
OP2: (18.144,-16.621,126.965)
C2: (19.461,-13.926,121.519)
C1': (20.749,-13.320,123.460)
C3': (19.587,-12.406,125.266)
O5': (19.007,-14.225,127.316)
O4': (21.240,-13.933,124.615)
C5': (20.323,-14.372,126.802)
P: (18.208,-15.479,127.955)
C4': (20.701,-13.298,125.794)
C2': (20.069,-12.044,123.883)
O2': (21.052,-11.023,123.954)
N1: (19.828,-14.265,122.773)
O4: (17.471,-16.644,120.538)
O2: (19.835,-12.896,121.034)
C6: (19.396,-15.459,123.287)
C5: (18.611,-16.298,122.607)
O3': (19.381,-11.271,126.057)
Image (generated by PyMOL):
PyMOL image
show in jmol