Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:A9:B2
Extra
PDB:
ATOM 1 O3' C A 8 -1.034 6.908 -8.542 1.00 47.95 O
ATOM 2 P A A 9 -1.713 6.615 -7.104 1.00 52.95 P
ATOM 3 OP1 A A 9 -2.442 7.878 -6.801 1.00 58.85 O
ATOM 4 OP2 A A 9 -0.759 6.060 -6.105 1.00 46.11 O
ATOM 5 O5' A A 9 -2.789 5.478 -7.414 1.00 52.87 O
ATOM 6 C5' A A 9 -3.925 5.754 -8.241 1.00 44.74 C
ATOM 7 C4' A A 9 -4.742 4.502 -8.423 1.00 47.91 C
ATOM 8 O4' A A 9 -3.931 3.529 -9.129 1.00 43.57 O
ATOM 9 C3' A A 9 -5.108 3.752 -7.146 1.00 45.96 C
ATOM 10 O3' A A 9 -6.258 4.264 -6.489 1.00 44.53 O
ATOM 11 C2' A A 9 -5.405 2.363 -7.673 1.00 39.46 C
ATOM 12 O2' A A 9 -6.706 2.319 -8.236 1.00 38.95 O
ATOM 13 C1' A A 9 -4.325 2.218 -8.747 1.00 37.32 C
ATOM 14 N9 A A 9 -3.149 1.539 -8.231 1.00 37.43 N
ATOM 15 C8 A A 9 -1.971 2.115 -7.847 1.00 18.48 C
ATOM 16 N7 A A 9 -1.092 1.254 -7.397 1.00 36.23 N
ATOM 17 C5 A A 9 -1.735 0.031 -7.494 1.00 27.79 C
ATOM 18 C6 A A 9 -1.339 -1.278 -7.154 1.00 33.09 C
ATOM 19 N6 A A 9 -0.154 -1.581 -6.630 1.00 26.78 N
ATOM 20 N1 A A 9 -2.219 -2.276 -7.371 1.00 41.32 N
ATOM 21 C2 A A 9 -3.415 -1.964 -7.894 1.00 39.15 C
ATOM 22 N3 A A 9 -3.904 -0.765 -8.249 1.00 28.20 N
ATOM 23 C4 A A 9 -3.002 0.193 -8.014 1.00 34.29 C
ATOM 24 P G A 10 -6.398 4.072 -4.898 1.00 60.01 P
ATOM 25 OP1 G A 10 -7.560 4.914 -4.508 1.00 49.20 O
ATOM 26 OP2 G A 10 -5.079 4.287 -4.256 1.00 53.82 O
ATOM 27 O5' G A 10 -6.726 2.527 -4.689 1.00 44.53 O
TER
ATOM 1 O3' C B 1 0.134 -12.009 -5.110 1.00 32.31 O
ATOM 2 P U B 2 0.283 -11.716 -6.690 1.00 45.51 P
ATOM 3 OP1 U B 2 0.204 -13.016 -7.404 1.00 52.81 O
ATOM 4 OP2 U B 2 1.459 -10.837 -6.896 1.00 37.55 O
ATOM 5 O5' U B 2 -0.985 -10.833 -7.079 1.00 37.36 O
ATOM 6 C5' U B 2 -2.290 -11.352 -6.976 1.00 24.55 C
ATOM 7 C4' U B 2 -3.292 -10.275 -7.269 1.00 27.92 C
ATOM 8 O4' U B 2 -3.208 -9.207 -6.283 1.00 35.72 O
ATOM 9 C3' U B 2 -3.062 -9.556 -8.565 1.00 25.74 C
ATOM 10 O3' U B 2 -3.515 -10.336 -9.649 1.00 36.38 O
ATOM 11 C2' U B 2 -3.864 -8.280 -8.363 1.00 39.45 C
ATOM 12 O2' U B 2 -5.236 -8.409 -8.636 1.00 38.66 O
ATOM 13 C1' U B 2 -3.587 -7.978 -6.885 1.00 38.79 C
ATOM 14 N1 U B 2 -2.453 -7.046 -6.768 1.00 41.04 N
ATOM 15 C2 U B 2 -2.655 -5.691 -7.080 1.00 35.49 C
ATOM 16 O2 U B 2 -3.728 -5.233 -7.396 1.00 36.73 O
ATOM 17 N3 U B 2 -1.533 -4.906 -7.020 1.00 32.67 N
ATOM 18 C4 U B 2 -0.250 -5.316 -6.694 1.00 36.52 C
ATOM 19 O4 U B 2 0.687 -4.498 -6.736 1.00 30.00 O
ATOM 20 C5 U B 2 -0.132 -6.709 -6.366 1.00 40.57 C
ATOM 21 C6 U B 2 -1.213 -7.504 -6.404 1.00 39.77 C
ATOM 22 P G B 3 -2.775 -10.226 -11.060 1.00 40.62 P
ATOM 23 OP1 G B 3 -3.271 -11.365 -11.909 1.00 46.19 O
ATOM 24 OP2 G B 3 -1.315 -10.098 -10.792 1.00 46.03 O
ATOM 25 O5' G B 3 -3.302 -8.828 -11.623 1.00 35.73 O
TER
ATOM 2 P A A 9 -1.713 6.615 -7.104 1.00 52.95 P
ATOM 3 OP1 A A 9 -2.442 7.878 -6.801 1.00 58.85 O
ATOM 4 OP2 A A 9 -0.759 6.060 -6.105 1.00 46.11 O
ATOM 5 O5' A A 9 -2.789 5.478 -7.414 1.00 52.87 O
ATOM 6 C5' A A 9 -3.925 5.754 -8.241 1.00 44.74 C
ATOM 7 C4' A A 9 -4.742 4.502 -8.423 1.00 47.91 C
ATOM 8 O4' A A 9 -3.931 3.529 -9.129 1.00 43.57 O
ATOM 9 C3' A A 9 -5.108 3.752 -7.146 1.00 45.96 C
ATOM 10 O3' A A 9 -6.258 4.264 -6.489 1.00 44.53 O
ATOM 11 C2' A A 9 -5.405 2.363 -7.673 1.00 39.46 C
ATOM 12 O2' A A 9 -6.706 2.319 -8.236 1.00 38.95 O
ATOM 13 C1' A A 9 -4.325 2.218 -8.747 1.00 37.32 C
ATOM 14 N9 A A 9 -3.149 1.539 -8.231 1.00 37.43 N
ATOM 15 C8 A A 9 -1.971 2.115 -7.847 1.00 18.48 C
ATOM 16 N7 A A 9 -1.092 1.254 -7.397 1.00 36.23 N
ATOM 17 C5 A A 9 -1.735 0.031 -7.494 1.00 27.79 C
ATOM 18 C6 A A 9 -1.339 -1.278 -7.154 1.00 33.09 C
ATOM 19 N6 A A 9 -0.154 -1.581 -6.630 1.00 26.78 N
ATOM 20 N1 A A 9 -2.219 -2.276 -7.371 1.00 41.32 N
ATOM 21 C2 A A 9 -3.415 -1.964 -7.894 1.00 39.15 C
ATOM 22 N3 A A 9 -3.904 -0.765 -8.249 1.00 28.20 N
ATOM 23 C4 A A 9 -3.002 0.193 -8.014 1.00 34.29 C
ATOM 24 P G A 10 -6.398 4.072 -4.898 1.00 60.01 P
ATOM 25 OP1 G A 10 -7.560 4.914 -4.508 1.00 49.20 O
ATOM 26 OP2 G A 10 -5.079 4.287 -4.256 1.00 53.82 O
ATOM 27 O5' G A 10 -6.726 2.527 -4.689 1.00 44.53 O
TER
ATOM 1 O3' C B 1 0.134 -12.009 -5.110 1.00 32.31 O
ATOM 2 P U B 2 0.283 -11.716 -6.690 1.00 45.51 P
ATOM 3 OP1 U B 2 0.204 -13.016 -7.404 1.00 52.81 O
ATOM 4 OP2 U B 2 1.459 -10.837 -6.896 1.00 37.55 O
ATOM 5 O5' U B 2 -0.985 -10.833 -7.079 1.00 37.36 O
ATOM 6 C5' U B 2 -2.290 -11.352 -6.976 1.00 24.55 C
ATOM 7 C4' U B 2 -3.292 -10.275 -7.269 1.00 27.92 C
ATOM 8 O4' U B 2 -3.208 -9.207 -6.283 1.00 35.72 O
ATOM 9 C3' U B 2 -3.062 -9.556 -8.565 1.00 25.74 C
ATOM 10 O3' U B 2 -3.515 -10.336 -9.649 1.00 36.38 O
ATOM 11 C2' U B 2 -3.864 -8.280 -8.363 1.00 39.45 C
ATOM 12 O2' U B 2 -5.236 -8.409 -8.636 1.00 38.66 O
ATOM 13 C1' U B 2 -3.587 -7.978 -6.885 1.00 38.79 C
ATOM 14 N1 U B 2 -2.453 -7.046 -6.768 1.00 41.04 N
ATOM 15 C2 U B 2 -2.655 -5.691 -7.080 1.00 35.49 C
ATOM 16 O2 U B 2 -3.728 -5.233 -7.396 1.00 36.73 O
ATOM 17 N3 U B 2 -1.533 -4.906 -7.020 1.00 32.67 N
ATOM 18 C4 U B 2 -0.250 -5.316 -6.694 1.00 36.52 C
ATOM 19 O4 U B 2 0.687 -4.498 -6.736 1.00 30.00 O
ATOM 20 C5 U B 2 -0.132 -6.709 -6.366 1.00 40.57 C
ATOM 21 C6 U B 2 -1.213 -7.504 -6.404 1.00 39.77 C
ATOM 22 P G B 3 -2.775 -10.226 -11.060 1.00 40.62 P
ATOM 23 OP1 G B 3 -3.271 -11.365 -11.909 1.00 46.19 O
ATOM 24 OP2 G B 3 -1.315 -10.098 -10.792 1.00 46.03 O
ATOM 25 O5' G B 3 -3.302 -8.828 -11.623 1.00 35.73 O
TER
Atoms:
OP1: (-2.442,7.878,-6.801)
OP2: (-0.759,6.060,-6.105)
C3': (-5.108,3.752,-7.146)
C1': (-4.325,2.218,-8.747)
C5': (-3.925,5.754,-8.241)
O4': (-3.931,3.529,-9.129)
C8: (-1.971,2.115,-7.847)
O2': (-6.706,2.319,-8.236)
C6: (-1.339,-1.278,-7.154)
C5: (-1.735,0.031,-7.494)
C4: (-3.002,0.193,-8.014)
P: (-1.713,6.615,-7.104)
C4': (-4.742,4.502,-8.423)
C2': (-5.405,2.363,-7.673)
C2: (-3.415,-1.964,-7.894)
N1: (-2.219,-2.276,-7.371)
N3: (-3.904,-0.765,-8.249)
N6: (-0.154,-1.581,-6.630)
N7: (-1.092,1.254,-7.397)
N9: (-3.149,1.539,-8.231)
O5': (-2.789,5.478,-7.414)
O3': (-6.258,4.264,-6.489)
OP2: (-0.759,6.060,-6.105)
C3': (-5.108,3.752,-7.146)
C1': (-4.325,2.218,-8.747)
C5': (-3.925,5.754,-8.241)
O4': (-3.931,3.529,-9.129)
C8: (-1.971,2.115,-7.847)
O2': (-6.706,2.319,-8.236)
C6: (-1.339,-1.278,-7.154)
C5: (-1.735,0.031,-7.494)
C4: (-3.002,0.193,-8.014)
P: (-1.713,6.615,-7.104)
C4': (-4.742,4.502,-8.423)
C2': (-5.405,2.363,-7.673)
C2: (-3.415,-1.964,-7.894)
N1: (-2.219,-2.276,-7.371)
N3: (-3.904,-0.765,-8.249)
N6: (-0.154,-1.581,-6.630)
N7: (-1.092,1.254,-7.397)
N9: (-3.149,1.539,-8.231)
O5': (-2.789,5.478,-7.414)
O3': (-6.258,4.264,-6.489)
C4: (-0.250,-5.316,-6.694)
N3: (-1.533,-4.906,-7.020)
OP1: (0.204,-13.016,-7.404)
OP2: (1.459,-10.837,-6.896)
C2: (-2.655,-5.691,-7.080)
C1': (-3.587,-7.978,-6.885)
C3': (-3.062,-9.556,-8.565)
O5': (-0.985,-10.833,-7.079)
O4': (-3.208,-9.207,-6.283)
C5': (-2.290,-11.352,-6.976)
P: (0.283,-11.716,-6.690)
C4': (-3.292,-10.275,-7.269)
C2': (-3.864,-8.280,-8.363)
O2': (-5.236,-8.409,-8.636)
N1: (-2.453,-7.046,-6.768)
O4: (0.687,-4.498,-6.736)
O2: (-3.728,-5.233,-7.396)
C6: (-1.213,-7.504,-6.404)
C5: (-0.132,-6.709,-6.366)
O3': (-3.515,-10.336,-9.649)
N3: (-1.533,-4.906,-7.020)
OP1: (0.204,-13.016,-7.404)
OP2: (1.459,-10.837,-6.896)
C2: (-2.655,-5.691,-7.080)
C1': (-3.587,-7.978,-6.885)
C3': (-3.062,-9.556,-8.565)
O5': (-0.985,-10.833,-7.079)
O4': (-3.208,-9.207,-6.283)
C5': (-2.290,-11.352,-6.976)
P: (0.283,-11.716,-6.690)
C4': (-3.292,-10.275,-7.269)
C2': (-3.864,-8.280,-8.363)
O2': (-5.236,-8.409,-8.636)
N1: (-2.453,-7.046,-6.768)
O4: (0.687,-4.498,-6.736)
O2: (-3.728,-5.233,-7.396)
C6: (-1.213,-7.504,-6.404)
C5: (-0.132,-6.709,-6.366)
O3': (-3.515,-10.336,-9.649)
Image (generated by PyMOL):