Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:B9:A6
Extra
PDB:
ATOM 1 O3' A A 8 6.654 17.669 51.908 1.00 26.16 O
ATOM 2 P A A 9 6.185 17.769 50.376 1.00 27.78 P
ATOM 3 OP1 A A 9 7.216 17.095 49.536 1.00 28.02 O
ATOM 4 OP2 A A 9 5.805 19.177 50.077 1.00 28.50 O
ATOM 5 O5' A A 9 4.864 16.883 50.338 1.00 26.14 O
ATOM 6 C5' A A 9 4.859 15.567 50.878 1.00 25.77 C
ATOM 7 C4' A A 9 3.456 15.014 50.894 1.00 27.23 C
ATOM 8 O4' A A 9 2.688 15.591 51.985 1.00 26.96 O
ATOM 9 C3' A A 9 2.642 15.326 49.653 1.00 27.64 C
ATOM 10 O3' A A 9 2.960 14.441 48.593 1.00 27.26 O
ATOM 11 C2' A A 9 1.215 15.187 50.163 1.00 27.55 C
ATOM 12 O2' A A 9 0.764 13.850 50.239 1.00 30.71 O
ATOM 13 C1' A A 9 1.344 15.768 51.574 1.00 27.06 C
ATOM 14 N9 A A 9 1.033 17.196 51.619 1.00 26.79 N
ATOM 15 C8 A A 9 1.892 18.251 51.469 1.00 26.92 C
ATOM 16 N7 A A 9 1.307 19.420 51.546 1.00 27.82 N
ATOM 17 C5 A A 9 -0.025 19.110 51.763 1.00 26.28 C
ATOM 18 C6 A A 9 -1.161 19.911 51.920 1.00 25.25 C
ATOM 19 N6 A A 9 -1.131 21.241 51.890 1.00 25.58 N
ATOM 20 N1 A A 9 -2.343 19.292 52.109 1.00 24.73 N
ATOM 21 C2 A A 9 -2.368 17.959 52.142 1.00 24.83 C
ATOM 22 N3 A A 9 -1.367 17.097 52.008 1.00 24.15 N
ATOM 23 C4 A A 9 -0.209 17.746 51.815 1.00 24.64 C
ATOM 24 P G A 10 2.839 14.951 47.077 1.00 28.03 P
ATOM 25 OP1 G A 10 3.373 13.895 46.167 1.00 31.03 O
ATOM 26 OP2 G A 10 3.368 16.329 46.982 1.00 30.56 O
ATOM 27 O5' G A 10 1.272 14.984 46.870 1.00 28.30 O
TER
ATOM 1 P U B 6 -10.072 24.556 54.407 1.00 38.62 P
ATOM 2 OP1 U B 6 -11.315 24.756 55.218 1.00 34.39 O
ATOM 3 OP2 U B 6 -8.780 25.182 54.848 1.00 33.26 O
ATOM 4 O5' U B 6 -9.798 22.991 54.260 1.00 33.31 O
ATOM 5 C5' U B 6 -10.790 22.124 53.736 1.00 27.16 C
ATOM 6 C4' U B 6 -10.197 20.770 53.468 1.00 25.46 C
ATOM 7 O4' U B 6 -9.273 20.871 52.358 1.00 21.39 O
ATOM 8 C3' U B 6 -9.330 20.186 54.573 1.00 24.61 C
ATOM 9 O3' U B 6 -10.083 19.605 55.625 1.00 22.95 O
ATOM 10 C2' U B 6 -8.534 19.147 53.807 1.00 20.78 C
ATOM 11 O2' U B 6 -9.306 18.012 53.501 1.00 21.96 O
ATOM 12 C1' U B 6 -8.247 19.906 52.516 1.00 22.61 C
ATOM 13 N1 U B 6 -6.954 20.597 52.569 1.00 23.68 N
ATOM 14 C2 U B 6 -5.829 19.855 52.236 1.00 25.36 C
ATOM 15 O2 U B 6 -5.884 18.671 51.917 1.00 24.75 O
ATOM 16 N3 U B 6 -4.645 20.546 52.292 1.00 23.26 N
ATOM 17 C4 U B 6 -4.473 21.864 52.643 1.00 23.26 C
ATOM 18 O4 U B 6 -3.340 22.330 52.678 1.00 23.51 O
ATOM 19 C5 U B 6 -5.681 22.561 52.983 1.00 22.86 C
ATOM 20 C6 U B 6 -6.850 21.918 52.934 1.00 22.67 C
ATOM 21 P U B 7 -9.513 19.659 57.128 1.00 26.23 P
ATOM 22 OP1 U B 7 -10.555 19.022 57.971 1.00 25.66 O
ATOM 23 OP2 U B 7 -9.023 21.025 57.456 1.00 23.16 O
ATOM 24 O5' U B 7 -8.254 18.685 57.108 1.00 25.67 O
TER
ATOM 2 P A A 9 6.185 17.769 50.376 1.00 27.78 P
ATOM 3 OP1 A A 9 7.216 17.095 49.536 1.00 28.02 O
ATOM 4 OP2 A A 9 5.805 19.177 50.077 1.00 28.50 O
ATOM 5 O5' A A 9 4.864 16.883 50.338 1.00 26.14 O
ATOM 6 C5' A A 9 4.859 15.567 50.878 1.00 25.77 C
ATOM 7 C4' A A 9 3.456 15.014 50.894 1.00 27.23 C
ATOM 8 O4' A A 9 2.688 15.591 51.985 1.00 26.96 O
ATOM 9 C3' A A 9 2.642 15.326 49.653 1.00 27.64 C
ATOM 10 O3' A A 9 2.960 14.441 48.593 1.00 27.26 O
ATOM 11 C2' A A 9 1.215 15.187 50.163 1.00 27.55 C
ATOM 12 O2' A A 9 0.764 13.850 50.239 1.00 30.71 O
ATOM 13 C1' A A 9 1.344 15.768 51.574 1.00 27.06 C
ATOM 14 N9 A A 9 1.033 17.196 51.619 1.00 26.79 N
ATOM 15 C8 A A 9 1.892 18.251 51.469 1.00 26.92 C
ATOM 16 N7 A A 9 1.307 19.420 51.546 1.00 27.82 N
ATOM 17 C5 A A 9 -0.025 19.110 51.763 1.00 26.28 C
ATOM 18 C6 A A 9 -1.161 19.911 51.920 1.00 25.25 C
ATOM 19 N6 A A 9 -1.131 21.241 51.890 1.00 25.58 N
ATOM 20 N1 A A 9 -2.343 19.292 52.109 1.00 24.73 N
ATOM 21 C2 A A 9 -2.368 17.959 52.142 1.00 24.83 C
ATOM 22 N3 A A 9 -1.367 17.097 52.008 1.00 24.15 N
ATOM 23 C4 A A 9 -0.209 17.746 51.815 1.00 24.64 C
ATOM 24 P G A 10 2.839 14.951 47.077 1.00 28.03 P
ATOM 25 OP1 G A 10 3.373 13.895 46.167 1.00 31.03 O
ATOM 26 OP2 G A 10 3.368 16.329 46.982 1.00 30.56 O
ATOM 27 O5' G A 10 1.272 14.984 46.870 1.00 28.30 O
TER
ATOM 1 P U B 6 -10.072 24.556 54.407 1.00 38.62 P
ATOM 2 OP1 U B 6 -11.315 24.756 55.218 1.00 34.39 O
ATOM 3 OP2 U B 6 -8.780 25.182 54.848 1.00 33.26 O
ATOM 4 O5' U B 6 -9.798 22.991 54.260 1.00 33.31 O
ATOM 5 C5' U B 6 -10.790 22.124 53.736 1.00 27.16 C
ATOM 6 C4' U B 6 -10.197 20.770 53.468 1.00 25.46 C
ATOM 7 O4' U B 6 -9.273 20.871 52.358 1.00 21.39 O
ATOM 8 C3' U B 6 -9.330 20.186 54.573 1.00 24.61 C
ATOM 9 O3' U B 6 -10.083 19.605 55.625 1.00 22.95 O
ATOM 10 C2' U B 6 -8.534 19.147 53.807 1.00 20.78 C
ATOM 11 O2' U B 6 -9.306 18.012 53.501 1.00 21.96 O
ATOM 12 C1' U B 6 -8.247 19.906 52.516 1.00 22.61 C
ATOM 13 N1 U B 6 -6.954 20.597 52.569 1.00 23.68 N
ATOM 14 C2 U B 6 -5.829 19.855 52.236 1.00 25.36 C
ATOM 15 O2 U B 6 -5.884 18.671 51.917 1.00 24.75 O
ATOM 16 N3 U B 6 -4.645 20.546 52.292 1.00 23.26 N
ATOM 17 C4 U B 6 -4.473 21.864 52.643 1.00 23.26 C
ATOM 18 O4 U B 6 -3.340 22.330 52.678 1.00 23.51 O
ATOM 19 C5 U B 6 -5.681 22.561 52.983 1.00 22.86 C
ATOM 20 C6 U B 6 -6.850 21.918 52.934 1.00 22.67 C
ATOM 21 P U B 7 -9.513 19.659 57.128 1.00 26.23 P
ATOM 22 OP1 U B 7 -10.555 19.022 57.971 1.00 25.66 O
ATOM 23 OP2 U B 7 -9.023 21.025 57.456 1.00 23.16 O
ATOM 24 O5' U B 7 -8.254 18.685 57.108 1.00 25.67 O
TER
Atoms:
OP1: (7.216,17.095,49.536)
OP2: (5.805,19.177,50.077)
C3': (2.642,15.326,49.653)
C1': (1.344,15.768,51.574)
C5': (4.859,15.567,50.878)
O4': (2.688,15.591,51.985)
C8: (1.892,18.251,51.469)
O2': (0.764,13.850,50.239)
C6: (-1.161,19.911,51.920)
C5: (-0.025,19.110,51.763)
C4: (-0.209,17.746,51.815)
P: (6.185,17.769,50.376)
C4': (3.456,15.014,50.894)
C2': (1.215,15.187,50.163)
C2: (-2.368,17.959,52.142)
N1: (-2.343,19.292,52.109)
N3: (-1.367,17.097,52.008)
N6: (-1.131,21.241,51.890)
N7: (1.307,19.420,51.546)
N9: (1.033,17.196,51.619)
O5': (4.864,16.883,50.338)
O3': (2.960,14.441,48.593)
OP2: (5.805,19.177,50.077)
C3': (2.642,15.326,49.653)
C1': (1.344,15.768,51.574)
C5': (4.859,15.567,50.878)
O4': (2.688,15.591,51.985)
C8: (1.892,18.251,51.469)
O2': (0.764,13.850,50.239)
C6: (-1.161,19.911,51.920)
C5: (-0.025,19.110,51.763)
C4: (-0.209,17.746,51.815)
P: (6.185,17.769,50.376)
C4': (3.456,15.014,50.894)
C2': (1.215,15.187,50.163)
C2: (-2.368,17.959,52.142)
N1: (-2.343,19.292,52.109)
N3: (-1.367,17.097,52.008)
N6: (-1.131,21.241,51.890)
N7: (1.307,19.420,51.546)
N9: (1.033,17.196,51.619)
O5': (4.864,16.883,50.338)
O3': (2.960,14.441,48.593)
C4: (-4.473,21.864,52.643)
N3: (-4.645,20.546,52.292)
OP1: (-11.315,24.756,55.218)
OP2: (-8.780,25.182,54.848)
C2: (-5.829,19.855,52.236)
C1': (-8.247,19.906,52.516)
C3': (-9.330,20.186,54.573)
O5': (-9.798,22.991,54.260)
O4': (-9.273,20.871,52.358)
C5': (-10.790,22.124,53.736)
P: (-10.072,24.556,54.407)
C4': (-10.197,20.770,53.468)
C2': (-8.534,19.147,53.807)
O2': (-9.306,18.012,53.501)
N1: (-6.954,20.597,52.569)
O4: (-3.340,22.330,52.678)
O2: (-5.884,18.671,51.917)
C6: (-6.850,21.918,52.934)
C5: (-5.681,22.561,52.983)
O3': (-10.083,19.605,55.625)
N3: (-4.645,20.546,52.292)
OP1: (-11.315,24.756,55.218)
OP2: (-8.780,25.182,54.848)
C2: (-5.829,19.855,52.236)
C1': (-8.247,19.906,52.516)
C3': (-9.330,20.186,54.573)
O5': (-9.798,22.991,54.260)
O4': (-9.273,20.871,52.358)
C5': (-10.790,22.124,53.736)
P: (-10.072,24.556,54.407)
C4': (-10.197,20.770,53.468)
C2': (-8.534,19.147,53.807)
O2': (-9.306,18.012,53.501)
N1: (-6.954,20.597,52.569)
O4: (-3.340,22.330,52.678)
O2: (-5.884,18.671,51.917)
C6: (-6.850,21.918,52.934)
C5: (-5.681,22.561,52.983)
O3': (-10.083,19.605,55.625)
Image (generated by PyMOL):