Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:D44:D52
Extra
PDB:
ATOM 1 O3' C A 43 -0.854 -6.384 -73.213 1.00 59.45 O
ATOM 2 P A A 44 -1.504 -6.565 -71.754 1.00 68.06 P
ATOM 3 OP1 A A 44 -2.869 -7.110 -71.950 1.00 63.86 O
ATOM 4 OP2 A A 44 -1.349 -5.271 -71.045 1.00 61.06 O
ATOM 5 O5' A A 44 -0.570 -7.669 -71.078 1.00 60.88 O
ATOM 6 C5' A A 44 -0.666 -9.037 -71.453 1.00 55.35 C
ATOM 7 C4' A A 44 0.466 -9.858 -70.878 1.00 52.48 C
ATOM 8 O4' A A 44 1.722 -9.155 -71.047 1.00 55.25 O
ATOM 9 C3' A A 44 0.401 -10.146 -69.383 1.00 48.93 C
ATOM 10 O3' A A 44 -0.458 -11.230 -69.068 1.00 50.23 O
ATOM 11 C2' A A 44 1.861 -10.408 -69.026 1.00 52.97 C
ATOM 12 O2' A A 44 2.228 -11.742 -69.348 1.00 62.00 O
ATOM 13 C1' A A 44 2.593 -9.459 -69.977 1.00 52.11 C
ATOM 14 N9 A A 44 2.990 -8.203 -69.315 1.00 49.72 N
ATOM 15 C8 A A 44 2.372 -6.978 -69.358 1.00 49.06 C
ATOM 16 N7 A A 44 2.986 -6.052 -68.660 1.00 47.97 N
ATOM 17 C5 A A 44 4.085 -6.714 -68.125 1.00 46.92 C
ATOM 18 C6 A A 44 5.136 -6.293 -67.291 1.00 42.86 C
ATOM 19 N6 A A 44 5.254 -5.046 -66.829 1.00 39.45 N
ATOM 20 N1 A A 44 6.072 -7.205 -66.943 1.00 42.28 N
ATOM 21 C2 A A 44 5.948 -8.454 -67.409 1.00 46.90 C
ATOM 22 N3 A A 44 5.010 -8.971 -68.200 1.00 46.95 N
ATOM 23 C4 A A 44 4.100 -8.037 -68.525 1.00 47.80 C
ATOM 24 P C A 45 -1.193 -11.299 -67.638 1.00 54.62 P
ATOM 25 OP1 C A 45 -1.972 -12.563 -67.608 1.00 59.94 O
ATOM 26 OP2 C A 45 -1.912 -10.016 -67.454 1.00 55.18 O
ATOM 27 O5' C A 45 0.024 -11.389 -66.614 1.00 60.90 O
TER
ATOM 1 O3' A B 51 14.574 -9.713 -58.627 1.00 41.45 O
ATOM 2 P U B 52 15.138 -8.771 -59.798 1.00 42.42 P
ATOM 3 OP1 U B 52 15.821 -9.651 -60.777 1.00 48.85 O
ATOM 4 OP2 U B 52 15.914 -7.686 -59.150 1.00 41.97 O
ATOM 5 O5' U B 52 13.807 -8.176 -60.439 1.00 34.64 O
ATOM 6 C5' U B 52 13.598 -8.207 -61.843 1.00 38.65 C
ATOM 7 C4' U B 52 12.588 -9.259 -62.228 1.00 39.28 C
ATOM 8 O4' U B 52 11.257 -8.824 -61.848 1.00 39.35 O
ATOM 9 C3' U B 52 12.468 -9.555 -63.715 1.00 43.06 C
ATOM 10 O3' U B 52 13.477 -10.430 -64.189 1.00 45.10 O
ATOM 11 C2' U B 52 11.061 -10.128 -63.824 1.00 41.60 C
ATOM 12 O2' U B 52 11.036 -11.482 -63.397 1.00 40.77 O
ATOM 13 C1' U B 52 10.313 -9.282 -62.793 1.00 38.38 C
ATOM 14 N1 U B 52 9.656 -8.110 -63.410 1.00 38.15 N
ATOM 15 C2 U B 52 8.593 -8.364 -64.254 1.00 37.25 C
ATOM 16 O2 U B 52 8.195 -9.492 -64.494 1.00 33.10 O
ATOM 17 N3 U B 52 8.013 -7.251 -64.810 1.00 35.51 N
ATOM 18 C4 U B 52 8.382 -5.937 -64.611 1.00 35.69 C
ATOM 19 O4 U B 52 7.759 -5.042 -65.186 1.00 38.97 O
ATOM 20 C5 U B 52 9.490 -5.756 -63.724 1.00 34.26 C
ATOM 21 C6 U B 52 10.078 -6.822 -63.167 1.00 35.65 C
ATOM 22 P G B 53 14.129 -10.203 -65.640 1.00 43.60 P
ATOM 23 OP1 G B 53 15.374 -11.008 -65.689 1.00 54.33 O
ATOM 24 OP2 G B 53 14.219 -8.740 -65.857 1.00 35.92 O
ATOM 25 O5' G B 53 13.041 -10.829 -66.617 1.00 40.91 O
TER
ATOM 2 P A A 44 -1.504 -6.565 -71.754 1.00 68.06 P
ATOM 3 OP1 A A 44 -2.869 -7.110 -71.950 1.00 63.86 O
ATOM 4 OP2 A A 44 -1.349 -5.271 -71.045 1.00 61.06 O
ATOM 5 O5' A A 44 -0.570 -7.669 -71.078 1.00 60.88 O
ATOM 6 C5' A A 44 -0.666 -9.037 -71.453 1.00 55.35 C
ATOM 7 C4' A A 44 0.466 -9.858 -70.878 1.00 52.48 C
ATOM 8 O4' A A 44 1.722 -9.155 -71.047 1.00 55.25 O
ATOM 9 C3' A A 44 0.401 -10.146 -69.383 1.00 48.93 C
ATOM 10 O3' A A 44 -0.458 -11.230 -69.068 1.00 50.23 O
ATOM 11 C2' A A 44 1.861 -10.408 -69.026 1.00 52.97 C
ATOM 12 O2' A A 44 2.228 -11.742 -69.348 1.00 62.00 O
ATOM 13 C1' A A 44 2.593 -9.459 -69.977 1.00 52.11 C
ATOM 14 N9 A A 44 2.990 -8.203 -69.315 1.00 49.72 N
ATOM 15 C8 A A 44 2.372 -6.978 -69.358 1.00 49.06 C
ATOM 16 N7 A A 44 2.986 -6.052 -68.660 1.00 47.97 N
ATOM 17 C5 A A 44 4.085 -6.714 -68.125 1.00 46.92 C
ATOM 18 C6 A A 44 5.136 -6.293 -67.291 1.00 42.86 C
ATOM 19 N6 A A 44 5.254 -5.046 -66.829 1.00 39.45 N
ATOM 20 N1 A A 44 6.072 -7.205 -66.943 1.00 42.28 N
ATOM 21 C2 A A 44 5.948 -8.454 -67.409 1.00 46.90 C
ATOM 22 N3 A A 44 5.010 -8.971 -68.200 1.00 46.95 N
ATOM 23 C4 A A 44 4.100 -8.037 -68.525 1.00 47.80 C
ATOM 24 P C A 45 -1.193 -11.299 -67.638 1.00 54.62 P
ATOM 25 OP1 C A 45 -1.972 -12.563 -67.608 1.00 59.94 O
ATOM 26 OP2 C A 45 -1.912 -10.016 -67.454 1.00 55.18 O
ATOM 27 O5' C A 45 0.024 -11.389 -66.614 1.00 60.90 O
TER
ATOM 1 O3' A B 51 14.574 -9.713 -58.627 1.00 41.45 O
ATOM 2 P U B 52 15.138 -8.771 -59.798 1.00 42.42 P
ATOM 3 OP1 U B 52 15.821 -9.651 -60.777 1.00 48.85 O
ATOM 4 OP2 U B 52 15.914 -7.686 -59.150 1.00 41.97 O
ATOM 5 O5' U B 52 13.807 -8.176 -60.439 1.00 34.64 O
ATOM 6 C5' U B 52 13.598 -8.207 -61.843 1.00 38.65 C
ATOM 7 C4' U B 52 12.588 -9.259 -62.228 1.00 39.28 C
ATOM 8 O4' U B 52 11.257 -8.824 -61.848 1.00 39.35 O
ATOM 9 C3' U B 52 12.468 -9.555 -63.715 1.00 43.06 C
ATOM 10 O3' U B 52 13.477 -10.430 -64.189 1.00 45.10 O
ATOM 11 C2' U B 52 11.061 -10.128 -63.824 1.00 41.60 C
ATOM 12 O2' U B 52 11.036 -11.482 -63.397 1.00 40.77 O
ATOM 13 C1' U B 52 10.313 -9.282 -62.793 1.00 38.38 C
ATOM 14 N1 U B 52 9.656 -8.110 -63.410 1.00 38.15 N
ATOM 15 C2 U B 52 8.593 -8.364 -64.254 1.00 37.25 C
ATOM 16 O2 U B 52 8.195 -9.492 -64.494 1.00 33.10 O
ATOM 17 N3 U B 52 8.013 -7.251 -64.810 1.00 35.51 N
ATOM 18 C4 U B 52 8.382 -5.937 -64.611 1.00 35.69 C
ATOM 19 O4 U B 52 7.759 -5.042 -65.186 1.00 38.97 O
ATOM 20 C5 U B 52 9.490 -5.756 -63.724 1.00 34.26 C
ATOM 21 C6 U B 52 10.078 -6.822 -63.167 1.00 35.65 C
ATOM 22 P G B 53 14.129 -10.203 -65.640 1.00 43.60 P
ATOM 23 OP1 G B 53 15.374 -11.008 -65.689 1.00 54.33 O
ATOM 24 OP2 G B 53 14.219 -8.740 -65.857 1.00 35.92 O
ATOM 25 O5' G B 53 13.041 -10.829 -66.617 1.00 40.91 O
TER
Atoms:
OP1: (-2.869,-7.110,-71.950)
OP2: (-1.349,-5.271,-71.045)
C3': (0.401,-10.146,-69.383)
C1': (2.593,-9.459,-69.977)
C5': (-0.666,-9.037,-71.453)
O4': (1.722,-9.155,-71.047)
C8: (2.372,-6.978,-69.358)
O2': (2.228,-11.742,-69.348)
C6: (5.136,-6.293,-67.291)
C5: (4.085,-6.714,-68.125)
C4: (4.100,-8.037,-68.525)
P: (-1.504,-6.565,-71.754)
C4': (0.466,-9.858,-70.878)
C2': (1.861,-10.408,-69.026)
C2: (5.948,-8.454,-67.409)
N1: (6.072,-7.205,-66.943)
N3: (5.010,-8.971,-68.200)
N6: (5.254,-5.046,-66.829)
N7: (2.986,-6.052,-68.660)
N9: (2.990,-8.203,-69.315)
O5': (-0.570,-7.669,-71.078)
O3': (-0.458,-11.230,-69.068)
OP2: (-1.349,-5.271,-71.045)
C3': (0.401,-10.146,-69.383)
C1': (2.593,-9.459,-69.977)
C5': (-0.666,-9.037,-71.453)
O4': (1.722,-9.155,-71.047)
C8: (2.372,-6.978,-69.358)
O2': (2.228,-11.742,-69.348)
C6: (5.136,-6.293,-67.291)
C5: (4.085,-6.714,-68.125)
C4: (4.100,-8.037,-68.525)
P: (-1.504,-6.565,-71.754)
C4': (0.466,-9.858,-70.878)
C2': (1.861,-10.408,-69.026)
C2: (5.948,-8.454,-67.409)
N1: (6.072,-7.205,-66.943)
N3: (5.010,-8.971,-68.200)
N6: (5.254,-5.046,-66.829)
N7: (2.986,-6.052,-68.660)
N9: (2.990,-8.203,-69.315)
O5': (-0.570,-7.669,-71.078)
O3': (-0.458,-11.230,-69.068)
C4: (8.382,-5.937,-64.611)
N3: (8.013,-7.251,-64.810)
OP1: (15.821,-9.651,-60.777)
OP2: (15.914,-7.686,-59.150)
C2: (8.593,-8.364,-64.254)
C1': (10.313,-9.282,-62.793)
C3': (12.468,-9.555,-63.715)
O5': (13.807,-8.176,-60.439)
O4': (11.257,-8.824,-61.848)
C5': (13.598,-8.207,-61.843)
P: (15.138,-8.771,-59.798)
C4': (12.588,-9.259,-62.228)
C2': (11.061,-10.128,-63.824)
O2': (11.036,-11.482,-63.397)
N1: (9.656,-8.110,-63.410)
O4: (7.759,-5.042,-65.186)
O2: (8.195,-9.492,-64.494)
C6: (10.078,-6.822,-63.167)
C5: (9.490,-5.756,-63.724)
O3': (13.477,-10.430,-64.189)
N3: (8.013,-7.251,-64.810)
OP1: (15.821,-9.651,-60.777)
OP2: (15.914,-7.686,-59.150)
C2: (8.593,-8.364,-64.254)
C1': (10.313,-9.282,-62.793)
C3': (12.468,-9.555,-63.715)
O5': (13.807,-8.176,-60.439)
O4': (11.257,-8.824,-61.848)
C5': (13.598,-8.207,-61.843)
P: (15.138,-8.771,-59.798)
C4': (12.588,-9.259,-62.228)
C2': (11.061,-10.128,-63.824)
O2': (11.036,-11.482,-63.397)
N1: (9.656,-8.110,-63.410)
O4: (7.759,-5.042,-65.186)
O2: (8.195,-9.492,-64.494)
C6: (10.078,-6.822,-63.167)
C5: (9.490,-5.756,-63.724)
O3': (13.477,-10.430,-64.189)
Image (generated by PyMOL):