Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0563:0570
Extra
PDB:
ATOM 1 O3' G A 562 -10.349 83.578 131.035 1.00 84.70 O
ATOM 2 P A A 563 -9.247 83.599 132.201 1.00 85.02 P
ATOM 3 OP1 A A 563 -9.675 82.613 133.218 1.00 86.39 O
ATOM 4 OP2 A A 563 -8.998 85.011 132.604 1.00 84.12 O
ATOM 5 O5' A A 563 -7.942 83.033 131.490 1.00 84.15 O
ATOM 6 C5' A A 563 -7.947 81.726 130.899 1.00 84.85 C
ATOM 7 C4' A A 563 -6.606 81.424 130.279 1.00 86.24 C
ATOM 8 O4' A A 563 -6.375 82.290 129.134 1.00 87.30 O
ATOM 9 C3' A A 563 -5.399 81.690 131.153 1.00 86.87 C
ATOM 10 O3' A A 563 -5.172 80.692 132.128 1.00 87.89 O
ATOM 11 C2' A A 563 -4.284 81.771 130.121 1.00 87.17 C
ATOM 12 O2' A A 563 -3.887 80.503 129.638 1.00 87.04 O
ATOM 13 C1' A A 563 -4.981 82.562 129.014 1.00 87.20 C
ATOM 14 N9 A A 563 -4.760 84.002 129.187 1.00 87.34 N
ATOM 15 C8 A A 563 -5.622 84.950 129.690 1.00 87.28 C
ATOM 16 N7 A A 563 -5.104 86.153 129.760 1.00 86.73 N
ATOM 17 C5 A A 563 -3.818 85.991 129.263 1.00 87.35 C
ATOM 18 C6 A A 563 -2.754 86.893 129.082 1.00 86.95 C
ATOM 19 N6 A A 563 -2.817 88.187 129.405 1.00 86.16 N
ATOM 20 N1 A A 563 -1.605 86.410 128.557 1.00 86.83 N
ATOM 21 C2 A A 563 -1.539 85.108 128.244 1.00 86.71 C
ATOM 22 N3 A A 563 -2.467 84.162 128.371 1.00 86.96 N
ATOM 23 C4 A A 563 -3.596 84.675 128.893 1.00 87.47 C
ATOM 24 P C A 564 -4.159 80.997 133.335 1.00 88.83 P
ATOM 25 OP1 C A 564 -4.193 79.845 134.272 1.00 90.04 O
ATOM 26 OP2 C A 564 -4.421 82.375 133.843 1.00 87.56 O
ATOM 27 O5' C A 564 -2.739 80.996 132.620 1.00 87.70 O
TER
ATOM 1 O3' G B 569 5.480 93.230 124.640 1.00 55.76 O
ATOM 2 P U B 570 4.269 92.705 123.720 1.00 56.69 P
ATOM 3 OP1 U B 570 4.664 92.906 122.305 1.00 56.90 O
ATOM 4 OP2 U B 570 3.018 93.327 124.225 1.00 56.40 O
ATOM 5 O5' U B 570 4.202 91.136 123.995 1.00 57.56 O
ATOM 6 C5' U B 570 5.253 90.261 123.539 1.00 62.09 C
ATOM 7 C4' U B 570 4.897 88.809 123.797 1.00 65.25 C
ATOM 8 O4' U B 570 4.644 88.620 125.216 1.00 65.57 O
ATOM 9 C3' U B 570 3.646 88.265 123.118 1.00 66.17 C
ATOM 10 O3' U B 570 3.903 87.852 121.772 1.00 67.74 O
ATOM 11 C2' U B 570 3.291 87.084 124.013 1.00 65.52 C
ATOM 12 O2' U B 570 4.119 85.966 123.769 1.00 65.13 O
ATOM 13 C1' U B 570 3.627 87.646 125.395 1.00 64.77 C
ATOM 14 N1 U B 570 2.487 88.286 126.074 1.00 64.17 N
ATOM 15 C2 U B 570 1.580 87.472 126.732 1.00 63.45 C
ATOM 16 O2 U B 570 1.669 86.255 126.754 1.00 63.59 O
ATOM 17 N3 U B 570 0.559 88.138 127.361 1.00 63.05 N
ATOM 18 C4 U B 570 0.348 89.501 127.392 1.00 63.41 C
ATOM 19 O4 U B 570 -0.632 89.950 127.985 1.00 63.30 O
ATOM 20 C5 U B 570 1.319 90.270 126.683 1.00 63.84 C
ATOM 21 C6 U B 570 2.327 89.655 126.064 1.00 64.08 C
ATOM 22 P C B 571 2.680 87.706 120.732 1.00 68.95 P
ATOM 23 OP1 C B 571 3.250 87.304 119.420 1.00 68.59 O
ATOM 24 OP2 C B 571 1.821 88.916 120.818 1.00 68.39 O
ATOM 25 O5' C B 571 1.840 86.479 121.299 1.00 70.01 O
TER
ATOM 2 P A A 563 -9.247 83.599 132.201 1.00 85.02 P
ATOM 3 OP1 A A 563 -9.675 82.613 133.218 1.00 86.39 O
ATOM 4 OP2 A A 563 -8.998 85.011 132.604 1.00 84.12 O
ATOM 5 O5' A A 563 -7.942 83.033 131.490 1.00 84.15 O
ATOM 6 C5' A A 563 -7.947 81.726 130.899 1.00 84.85 C
ATOM 7 C4' A A 563 -6.606 81.424 130.279 1.00 86.24 C
ATOM 8 O4' A A 563 -6.375 82.290 129.134 1.00 87.30 O
ATOM 9 C3' A A 563 -5.399 81.690 131.153 1.00 86.87 C
ATOM 10 O3' A A 563 -5.172 80.692 132.128 1.00 87.89 O
ATOM 11 C2' A A 563 -4.284 81.771 130.121 1.00 87.17 C
ATOM 12 O2' A A 563 -3.887 80.503 129.638 1.00 87.04 O
ATOM 13 C1' A A 563 -4.981 82.562 129.014 1.00 87.20 C
ATOM 14 N9 A A 563 -4.760 84.002 129.187 1.00 87.34 N
ATOM 15 C8 A A 563 -5.622 84.950 129.690 1.00 87.28 C
ATOM 16 N7 A A 563 -5.104 86.153 129.760 1.00 86.73 N
ATOM 17 C5 A A 563 -3.818 85.991 129.263 1.00 87.35 C
ATOM 18 C6 A A 563 -2.754 86.893 129.082 1.00 86.95 C
ATOM 19 N6 A A 563 -2.817 88.187 129.405 1.00 86.16 N
ATOM 20 N1 A A 563 -1.605 86.410 128.557 1.00 86.83 N
ATOM 21 C2 A A 563 -1.539 85.108 128.244 1.00 86.71 C
ATOM 22 N3 A A 563 -2.467 84.162 128.371 1.00 86.96 N
ATOM 23 C4 A A 563 -3.596 84.675 128.893 1.00 87.47 C
ATOM 24 P C A 564 -4.159 80.997 133.335 1.00 88.83 P
ATOM 25 OP1 C A 564 -4.193 79.845 134.272 1.00 90.04 O
ATOM 26 OP2 C A 564 -4.421 82.375 133.843 1.00 87.56 O
ATOM 27 O5' C A 564 -2.739 80.996 132.620 1.00 87.70 O
TER
ATOM 1 O3' G B 569 5.480 93.230 124.640 1.00 55.76 O
ATOM 2 P U B 570 4.269 92.705 123.720 1.00 56.69 P
ATOM 3 OP1 U B 570 4.664 92.906 122.305 1.00 56.90 O
ATOM 4 OP2 U B 570 3.018 93.327 124.225 1.00 56.40 O
ATOM 5 O5' U B 570 4.202 91.136 123.995 1.00 57.56 O
ATOM 6 C5' U B 570 5.253 90.261 123.539 1.00 62.09 C
ATOM 7 C4' U B 570 4.897 88.809 123.797 1.00 65.25 C
ATOM 8 O4' U B 570 4.644 88.620 125.216 1.00 65.57 O
ATOM 9 C3' U B 570 3.646 88.265 123.118 1.00 66.17 C
ATOM 10 O3' U B 570 3.903 87.852 121.772 1.00 67.74 O
ATOM 11 C2' U B 570 3.291 87.084 124.013 1.00 65.52 C
ATOM 12 O2' U B 570 4.119 85.966 123.769 1.00 65.13 O
ATOM 13 C1' U B 570 3.627 87.646 125.395 1.00 64.77 C
ATOM 14 N1 U B 570 2.487 88.286 126.074 1.00 64.17 N
ATOM 15 C2 U B 570 1.580 87.472 126.732 1.00 63.45 C
ATOM 16 O2 U B 570 1.669 86.255 126.754 1.00 63.59 O
ATOM 17 N3 U B 570 0.559 88.138 127.361 1.00 63.05 N
ATOM 18 C4 U B 570 0.348 89.501 127.392 1.00 63.41 C
ATOM 19 O4 U B 570 -0.632 89.950 127.985 1.00 63.30 O
ATOM 20 C5 U B 570 1.319 90.270 126.683 1.00 63.84 C
ATOM 21 C6 U B 570 2.327 89.655 126.064 1.00 64.08 C
ATOM 22 P C B 571 2.680 87.706 120.732 1.00 68.95 P
ATOM 23 OP1 C B 571 3.250 87.304 119.420 1.00 68.59 O
ATOM 24 OP2 C B 571 1.821 88.916 120.818 1.00 68.39 O
ATOM 25 O5' C B 571 1.840 86.479 121.299 1.00 70.01 O
TER
Atoms:
OP1: (-9.675,82.613,133.218)
OP2: (-8.998,85.011,132.604)
C3': (-5.399,81.690,131.153)
C1': (-4.981,82.562,129.014)
C5': (-7.947,81.726,130.899)
O4': (-6.375,82.290,129.134)
C8: (-5.622,84.950,129.690)
O2': (-3.887,80.503,129.638)
C6: (-2.754,86.893,129.082)
C5: (-3.818,85.991,129.263)
C4: (-3.596,84.675,128.893)
P: (-9.247,83.599,132.201)
C4': (-6.606,81.424,130.279)
C2': (-4.284,81.771,130.121)
C2: (-1.539,85.108,128.244)
N1: (-1.605,86.410,128.557)
N3: (-2.467,84.162,128.371)
N6: (-2.817,88.187,129.405)
N7: (-5.104,86.153,129.760)
N9: (-4.760,84.002,129.187)
O5': (-7.942,83.033,131.490)
O3': (-5.172,80.692,132.128)
OP2: (-8.998,85.011,132.604)
C3': (-5.399,81.690,131.153)
C1': (-4.981,82.562,129.014)
C5': (-7.947,81.726,130.899)
O4': (-6.375,82.290,129.134)
C8: (-5.622,84.950,129.690)
O2': (-3.887,80.503,129.638)
C6: (-2.754,86.893,129.082)
C5: (-3.818,85.991,129.263)
C4: (-3.596,84.675,128.893)
P: (-9.247,83.599,132.201)
C4': (-6.606,81.424,130.279)
C2': (-4.284,81.771,130.121)
C2: (-1.539,85.108,128.244)
N1: (-1.605,86.410,128.557)
N3: (-2.467,84.162,128.371)
N6: (-2.817,88.187,129.405)
N7: (-5.104,86.153,129.760)
N9: (-4.760,84.002,129.187)
O5': (-7.942,83.033,131.490)
O3': (-5.172,80.692,132.128)
C4: (0.348,89.501,127.392)
N3: (0.559,88.138,127.361)
OP1: (4.664,92.906,122.305)
OP2: (3.018,93.327,124.225)
C2: (1.580,87.472,126.732)
C1': (3.627,87.646,125.395)
C3': (3.646,88.265,123.118)
O5': (4.202,91.136,123.995)
O4': (4.644,88.620,125.216)
C5': (5.253,90.261,123.539)
P: (4.269,92.705,123.720)
C4': (4.897,88.809,123.797)
C2': (3.291,87.084,124.013)
O2': (4.119,85.966,123.769)
N1: (2.487,88.286,126.074)
O4: (-0.632,89.950,127.985)
O2: (1.669,86.255,126.754)
C6: (2.327,89.655,126.064)
C5: (1.319,90.270,126.683)
O3': (3.903,87.852,121.772)
N3: (0.559,88.138,127.361)
OP1: (4.664,92.906,122.305)
OP2: (3.018,93.327,124.225)
C2: (1.580,87.472,126.732)
C1': (3.627,87.646,125.395)
C3': (3.646,88.265,123.118)
O5': (4.202,91.136,123.995)
O4': (4.644,88.620,125.216)
C5': (5.253,90.261,123.539)
P: (4.269,92.705,123.720)
C4': (4.897,88.809,123.797)
C2': (3.291,87.084,124.013)
O2': (4.119,85.966,123.769)
N1: (2.487,88.286,126.074)
O4: (-0.632,89.950,127.985)
O2: (1.669,86.255,126.754)
C6: (2.327,89.655,126.064)
C5: (1.319,90.270,126.683)
O3': (3.903,87.852,121.772)
Image (generated by PyMOL):