Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12248:12258
Extra
PDB:
ATOM 1 O3' G A2247 -7.709 -53.682 130.633 1.00169.38 O
ATOM 2 P A A2248 -7.275 -55.059 129.910 1.00191.27 P
ATOM 3 OP1 A A2248 -8.489 -55.907 129.815 1.00191.65 O
ATOM 4 OP2 A A2248 -6.095 -55.585 130.641 1.00191.47 O
ATOM 5 O5' A A2248 -6.838 -54.578 128.455 1.00190.57 O
ATOM 6 C5' A A2248 -6.274 -55.493 127.526 1.00190.39 C
ATOM 7 C4' A A2248 -5.215 -54.839 126.672 1.00189.76 C
ATOM 8 O4' A A2248 -4.445 -53.901 127.476 1.00189.68 O
ATOM 9 C3' A A2248 -4.164 -55.773 126.077 1.00189.64 C
ATOM 10 O3' A A2248 -4.600 -56.428 124.889 1.00189.49 O
ATOM 11 C2' A A2248 -2.974 -54.842 125.866 1.00189.16 C
ATOM 12 O2' A A2248 -3.150 -54.052 124.697 1.00188.60 O
ATOM 13 C1' A A2248 -3.087 -53.929 127.087 1.00189.35 C
ATOM 14 N9 A A2248 -2.281 -54.420 128.226 1.00189.75 N
ATOM 15 C8 A A2248 -2.748 -54.949 129.406 1.00190.37 C
ATOM 16 N7 A A2248 -1.805 -55.305 130.245 1.00190.62 N
ATOM 17 C5 A A2248 -0.628 -54.990 129.578 1.00190.14 C
ATOM 18 C6 A A2248 0.730 -55.123 129.936 1.00190.13 C
ATOM 19 N6 A A2248 1.154 -55.627 131.100 1.00190.63 N
ATOM 20 N1 A A2248 1.656 -54.715 129.038 1.00189.59 N
ATOM 21 C2 A A2248 1.240 -54.206 127.870 1.00189.10 C
ATOM 22 N3 A A2248 -0.002 -54.028 127.423 1.00189.06 N
ATOM 23 C4 A A2248 -0.904 -54.444 128.332 1.00189.60 C
ATOM 24 P G A2249 -4.200 -57.967 124.601 1.00229.62 P
ATOM 25 OP1 G A2249 -4.730 -58.310 123.256 1.00229.37 O
ATOM 26 OP2 G A2249 -4.656 -58.764 125.768 1.00230.29 O
ATOM 27 O5' G A2249 -2.600 -57.923 124.560 1.00229.36 O
TER
ATOM 1 O3' U B2257 11.787 -53.123 130.674 1.00199.87 O
ATOM 2 P U B2258 11.202 -51.623 130.614 1.00163.05 P
ATOM 3 OP1 U B2258 12.327 -50.731 130.237 1.00162.62 O
ATOM 4 OP2 U B2258 10.504 -51.377 131.897 1.00163.54 O
ATOM 5 O5' U B2258 10.142 -51.701 129.418 1.00162.72 O
ATOM 6 C5' U B2258 10.562 -51.980 128.087 1.00162.27 C
ATOM 7 C4' U B2258 9.392 -52.195 127.151 1.00162.09 C
ATOM 8 O4' U B2258 8.594 -53.320 127.589 1.00162.59 O
ATOM 9 C3' U B2258 8.397 -51.052 127.041 1.00161.87 C
ATOM 10 O3' U B2258 8.842 -50.026 126.169 1.00161.29 O
ATOM 11 C2' U B2258 7.115 -51.743 126.566 1.00162.00 C
ATOM 12 O2' U B2258 7.083 -51.843 125.149 1.00161.54 O
ATOM 13 C1' U B2258 7.261 -53.154 127.154 1.00162.52 C
ATOM 14 N1 U B2258 6.351 -53.400 128.294 1.00163.08 N
ATOM 15 C2 U B2258 4.974 -53.366 128.096 1.00163.15 C
ATOM 16 O2 U B2258 4.434 -53.110 127.030 1.00162.77 O
ATOM 17 N3 U B2258 4.225 -53.630 129.219 1.00163.69 N
ATOM 18 C4 U B2258 4.691 -53.934 130.483 1.00164.18 C
ATOM 19 O4 U B2258 3.885 -54.150 131.390 1.00164.66 O
ATOM 20 C5 U B2258 6.118 -53.964 130.596 1.00164.08 C
ATOM 21 C6 U B2258 6.878 -53.711 129.524 1.00163.54 C
ATOM 22 P C B2259 8.417 -48.496 126.426 1.00194.55 P
ATOM 23 OP1 C B2259 9.667 -47.690 126.443 1.00194.27 O
ATOM 24 OP2 C B2259 7.546 -48.482 127.624 1.00195.05 O
ATOM 25 O5' C B2259 7.561 -48.145 125.131 1.00194.12 O
TER
ATOM 2 P A A2248 -7.275 -55.059 129.910 1.00191.27 P
ATOM 3 OP1 A A2248 -8.489 -55.907 129.815 1.00191.65 O
ATOM 4 OP2 A A2248 -6.095 -55.585 130.641 1.00191.47 O
ATOM 5 O5' A A2248 -6.838 -54.578 128.455 1.00190.57 O
ATOM 6 C5' A A2248 -6.274 -55.493 127.526 1.00190.39 C
ATOM 7 C4' A A2248 -5.215 -54.839 126.672 1.00189.76 C
ATOM 8 O4' A A2248 -4.445 -53.901 127.476 1.00189.68 O
ATOM 9 C3' A A2248 -4.164 -55.773 126.077 1.00189.64 C
ATOM 10 O3' A A2248 -4.600 -56.428 124.889 1.00189.49 O
ATOM 11 C2' A A2248 -2.974 -54.842 125.866 1.00189.16 C
ATOM 12 O2' A A2248 -3.150 -54.052 124.697 1.00188.60 O
ATOM 13 C1' A A2248 -3.087 -53.929 127.087 1.00189.35 C
ATOM 14 N9 A A2248 -2.281 -54.420 128.226 1.00189.75 N
ATOM 15 C8 A A2248 -2.748 -54.949 129.406 1.00190.37 C
ATOM 16 N7 A A2248 -1.805 -55.305 130.245 1.00190.62 N
ATOM 17 C5 A A2248 -0.628 -54.990 129.578 1.00190.14 C
ATOM 18 C6 A A2248 0.730 -55.123 129.936 1.00190.13 C
ATOM 19 N6 A A2248 1.154 -55.627 131.100 1.00190.63 N
ATOM 20 N1 A A2248 1.656 -54.715 129.038 1.00189.59 N
ATOM 21 C2 A A2248 1.240 -54.206 127.870 1.00189.10 C
ATOM 22 N3 A A2248 -0.002 -54.028 127.423 1.00189.06 N
ATOM 23 C4 A A2248 -0.904 -54.444 128.332 1.00189.60 C
ATOM 24 P G A2249 -4.200 -57.967 124.601 1.00229.62 P
ATOM 25 OP1 G A2249 -4.730 -58.310 123.256 1.00229.37 O
ATOM 26 OP2 G A2249 -4.656 -58.764 125.768 1.00230.29 O
ATOM 27 O5' G A2249 -2.600 -57.923 124.560 1.00229.36 O
TER
ATOM 1 O3' U B2257 11.787 -53.123 130.674 1.00199.87 O
ATOM 2 P U B2258 11.202 -51.623 130.614 1.00163.05 P
ATOM 3 OP1 U B2258 12.327 -50.731 130.237 1.00162.62 O
ATOM 4 OP2 U B2258 10.504 -51.377 131.897 1.00163.54 O
ATOM 5 O5' U B2258 10.142 -51.701 129.418 1.00162.72 O
ATOM 6 C5' U B2258 10.562 -51.980 128.087 1.00162.27 C
ATOM 7 C4' U B2258 9.392 -52.195 127.151 1.00162.09 C
ATOM 8 O4' U B2258 8.594 -53.320 127.589 1.00162.59 O
ATOM 9 C3' U B2258 8.397 -51.052 127.041 1.00161.87 C
ATOM 10 O3' U B2258 8.842 -50.026 126.169 1.00161.29 O
ATOM 11 C2' U B2258 7.115 -51.743 126.566 1.00162.00 C
ATOM 12 O2' U B2258 7.083 -51.843 125.149 1.00161.54 O
ATOM 13 C1' U B2258 7.261 -53.154 127.154 1.00162.52 C
ATOM 14 N1 U B2258 6.351 -53.400 128.294 1.00163.08 N
ATOM 15 C2 U B2258 4.974 -53.366 128.096 1.00163.15 C
ATOM 16 O2 U B2258 4.434 -53.110 127.030 1.00162.77 O
ATOM 17 N3 U B2258 4.225 -53.630 129.219 1.00163.69 N
ATOM 18 C4 U B2258 4.691 -53.934 130.483 1.00164.18 C
ATOM 19 O4 U B2258 3.885 -54.150 131.390 1.00164.66 O
ATOM 20 C5 U B2258 6.118 -53.964 130.596 1.00164.08 C
ATOM 21 C6 U B2258 6.878 -53.711 129.524 1.00163.54 C
ATOM 22 P C B2259 8.417 -48.496 126.426 1.00194.55 P
ATOM 23 OP1 C B2259 9.667 -47.690 126.443 1.00194.27 O
ATOM 24 OP2 C B2259 7.546 -48.482 127.624 1.00195.05 O
ATOM 25 O5' C B2259 7.561 -48.145 125.131 1.00194.12 O
TER
Atoms:
OP1: (-8.489,-55.907,129.815)
OP2: (-6.095,-55.585,130.641)
C3': (-4.164,-55.773,126.077)
C1': (-3.087,-53.929,127.087)
C5': (-6.274,-55.493,127.526)
O4': (-4.445,-53.901,127.476)
C8: (-2.748,-54.949,129.406)
O2': (-3.150,-54.052,124.697)
C6: (0.730,-55.123,129.936)
C5: (-0.628,-54.990,129.578)
C4: (-0.904,-54.444,128.332)
P: (-7.275,-55.059,129.910)
C4': (-5.215,-54.839,126.672)
C2': (-2.974,-54.842,125.866)
C2: (1.240,-54.206,127.870)
N1: (1.656,-54.715,129.038)
N3: (-0.002,-54.028,127.423)
N6: (1.154,-55.627,131.100)
N7: (-1.805,-55.305,130.245)
N9: (-2.281,-54.420,128.226)
O5': (-6.838,-54.578,128.455)
O3': (-4.600,-56.428,124.889)
OP2: (-6.095,-55.585,130.641)
C3': (-4.164,-55.773,126.077)
C1': (-3.087,-53.929,127.087)
C5': (-6.274,-55.493,127.526)
O4': (-4.445,-53.901,127.476)
C8: (-2.748,-54.949,129.406)
O2': (-3.150,-54.052,124.697)
C6: (0.730,-55.123,129.936)
C5: (-0.628,-54.990,129.578)
C4: (-0.904,-54.444,128.332)
P: (-7.275,-55.059,129.910)
C4': (-5.215,-54.839,126.672)
C2': (-2.974,-54.842,125.866)
C2: (1.240,-54.206,127.870)
N1: (1.656,-54.715,129.038)
N3: (-0.002,-54.028,127.423)
N6: (1.154,-55.627,131.100)
N7: (-1.805,-55.305,130.245)
N9: (-2.281,-54.420,128.226)
O5': (-6.838,-54.578,128.455)
O3': (-4.600,-56.428,124.889)
C4: (4.691,-53.934,130.483)
N3: (4.225,-53.630,129.219)
OP1: (12.327,-50.731,130.237)
OP2: (10.504,-51.377,131.897)
C2: (4.974,-53.366,128.096)
C1': (7.261,-53.154,127.154)
C3': (8.397,-51.052,127.041)
O5': (10.142,-51.701,129.418)
O4': (8.594,-53.320,127.589)
C5': (10.562,-51.980,128.087)
P: (11.202,-51.623,130.614)
C4': (9.392,-52.195,127.151)
C2': (7.115,-51.743,126.566)
O2': (7.083,-51.843,125.149)
N1: (6.351,-53.400,128.294)
O4: (3.885,-54.150,131.390)
O2: (4.434,-53.110,127.030)
C6: (6.878,-53.711,129.524)
C5: (6.118,-53.964,130.596)
O3': (8.842,-50.026,126.169)
N3: (4.225,-53.630,129.219)
OP1: (12.327,-50.731,130.237)
OP2: (10.504,-51.377,131.897)
C2: (4.974,-53.366,128.096)
C1': (7.261,-53.154,127.154)
C3': (8.397,-51.052,127.041)
O5': (10.142,-51.701,129.418)
O4': (8.594,-53.320,127.589)
C5': (10.562,-51.980,128.087)
P: (11.202,-51.623,130.614)
C4': (9.392,-52.195,127.151)
C2': (7.115,-51.743,126.566)
O2': (7.083,-51.843,125.149)
N1: (6.351,-53.400,128.294)
O4: (3.885,-54.150,131.390)
O2: (4.434,-53.110,127.030)
C6: (6.878,-53.711,129.524)
C5: (6.118,-53.964,130.596)
O3': (8.842,-50.026,126.169)
Image (generated by PyMOL):