Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A360:A265
Extra
PDB:
ATOM 1 O3' U A 359 78.068 87.074 -7.827 1.00107.55 O
ATOM 2 P A A 360 79.272 86.861 -6.775 1.00107.49 P
ATOM 3 OP1 A A 360 79.159 85.481 -6.235 1.00108.02 O
ATOM 4 OP2 A A 360 79.316 88.012 -5.834 1.00107.85 O
ATOM 5 O5' A A 360 80.593 86.936 -7.661 1.00105.32 O
ATOM 6 C5' A A 360 80.910 85.912 -8.614 1.00102.11 C
ATOM 7 C4' A A 360 82.091 86.339 -9.445 1.00100.14 C
ATOM 8 O4' A A 360 81.748 87.523 -10.205 1.00 99.70 O
ATOM 9 C3' A A 360 83.293 86.772 -8.631 1.00 99.22 C
ATOM 10 O3' A A 360 84.052 85.651 -8.249 1.00 98.85 O
ATOM 11 C2' A A 360 84.050 87.667 -9.595 1.00 98.98 C
ATOM 12 O2' A A 360 84.825 86.925 -10.514 1.00 97.89 O
ATOM 13 C1' A A 360 82.892 88.359 -10.315 1.00 99.79 C
ATOM 14 N9 A A 360 82.570 89.665 -9.746 1.00100.45 N
ATOM 15 C8 A A 360 81.468 90.025 -9.017 1.00100.51 C
ATOM 16 N7 A A 360 81.461 91.282 -8.660 1.00100.88 N
ATOM 17 C5 A A 360 82.640 91.785 -9.189 1.00101.18 C
ATOM 18 C6 A A 360 83.211 93.061 -9.164 1.00101.57 C
ATOM 19 N6 A A 360 82.648 94.104 -8.558 1.00102.09 N
ATOM 20 N1 A A 360 84.395 93.233 -9.790 1.00101.74 N
ATOM 21 C2 A A 360 84.957 92.180 -10.392 1.00101.82 C
ATOM 22 N3 A A 360 84.516 90.929 -10.481 1.00101.44 N
ATOM 23 C4 A A 360 83.336 90.798 -9.853 1.00100.91 C
ATOM 24 P G A 361 84.939 85.717 -6.920 1.00 98.77 P
ATOM 25 OP1 G A 361 85.411 84.331 -6.660 1.00 98.73 O
ATOM 26 OP2 G A 361 84.176 86.447 -5.875 1.00 98.91 O
ATOM 27 O5' G A 361 86.180 86.611 -7.352 1.00 97.40 O
TER
ATOM 1 O3' C B 264 89.700 102.108 -10.048 1.00 83.45 O
ATOM 2 P U B 265 88.865 102.130 -11.437 1.00 86.94 P
ATOM 3 OP1 U B 265 89.570 103.100 -12.330 1.00 86.33 O
ATOM 4 OP2 U B 265 87.426 102.348 -11.119 1.00 85.78 O
ATOM 5 O5' U B 265 89.009 100.649 -12.033 1.00 88.48 O
ATOM 6 C5' U B 265 90.312 100.094 -12.387 1.00 91.24 C
ATOM 7 C4' U B 265 90.189 98.636 -12.815 1.00 92.33 C
ATOM 8 O4' U B 265 89.960 97.757 -11.676 1.00 92.33 O
ATOM 9 C3' U B 265 89.030 98.319 -13.740 1.00 93.78 C
ATOM 10 O3' U B 265 89.257 98.739 -15.068 1.00 95.72 O
ATOM 11 C2' U B 265 88.863 96.812 -13.571 1.00 93.01 C
ATOM 12 O2' U B 265 89.749 95.994 -14.314 1.00 93.19 O
ATOM 13 C1' U B 265 89.136 96.663 -12.075 1.00 92.44 C
ATOM 14 N1 U B 265 87.874 96.713 -11.323 1.00 92.49 N
ATOM 15 C2 U B 265 87.266 95.508 -10.992 1.00 92.91 C
ATOM 16 O2 U B 265 87.732 94.421 -11.294 1.00 93.06 O
ATOM 17 N3 U B 265 86.084 95.625 -10.301 1.00 93.01 N
ATOM 18 C4 U B 265 85.458 96.796 -9.925 1.00 93.23 C
ATOM 19 O4 U B 265 84.416 96.740 -9.274 1.00 93.51 O
ATOM 20 C5 U B 265 86.144 97.993 -10.311 1.00 93.04 C
ATOM 21 C6 U B 265 87.300 97.912 -10.972 1.00 92.49 C
ATOM 22 P A B 266 88.004 98.974 -16.032 1.00 97.83 P
ATOM 23 OP1 A B 266 88.573 99.350 -17.352 1.00 98.13 O
ATOM 24 OP2 A B 266 87.023 99.877 -15.367 1.00 97.75 O
ATOM 25 O5' A B 266 87.334 97.530 -16.115 1.00 98.92 O
TER
ATOM 2 P A A 360 79.272 86.861 -6.775 1.00107.49 P
ATOM 3 OP1 A A 360 79.159 85.481 -6.235 1.00108.02 O
ATOM 4 OP2 A A 360 79.316 88.012 -5.834 1.00107.85 O
ATOM 5 O5' A A 360 80.593 86.936 -7.661 1.00105.32 O
ATOM 6 C5' A A 360 80.910 85.912 -8.614 1.00102.11 C
ATOM 7 C4' A A 360 82.091 86.339 -9.445 1.00100.14 C
ATOM 8 O4' A A 360 81.748 87.523 -10.205 1.00 99.70 O
ATOM 9 C3' A A 360 83.293 86.772 -8.631 1.00 99.22 C
ATOM 10 O3' A A 360 84.052 85.651 -8.249 1.00 98.85 O
ATOM 11 C2' A A 360 84.050 87.667 -9.595 1.00 98.98 C
ATOM 12 O2' A A 360 84.825 86.925 -10.514 1.00 97.89 O
ATOM 13 C1' A A 360 82.892 88.359 -10.315 1.00 99.79 C
ATOM 14 N9 A A 360 82.570 89.665 -9.746 1.00100.45 N
ATOM 15 C8 A A 360 81.468 90.025 -9.017 1.00100.51 C
ATOM 16 N7 A A 360 81.461 91.282 -8.660 1.00100.88 N
ATOM 17 C5 A A 360 82.640 91.785 -9.189 1.00101.18 C
ATOM 18 C6 A A 360 83.211 93.061 -9.164 1.00101.57 C
ATOM 19 N6 A A 360 82.648 94.104 -8.558 1.00102.09 N
ATOM 20 N1 A A 360 84.395 93.233 -9.790 1.00101.74 N
ATOM 21 C2 A A 360 84.957 92.180 -10.392 1.00101.82 C
ATOM 22 N3 A A 360 84.516 90.929 -10.481 1.00101.44 N
ATOM 23 C4 A A 360 83.336 90.798 -9.853 1.00100.91 C
ATOM 24 P G A 361 84.939 85.717 -6.920 1.00 98.77 P
ATOM 25 OP1 G A 361 85.411 84.331 -6.660 1.00 98.73 O
ATOM 26 OP2 G A 361 84.176 86.447 -5.875 1.00 98.91 O
ATOM 27 O5' G A 361 86.180 86.611 -7.352 1.00 97.40 O
TER
ATOM 1 O3' C B 264 89.700 102.108 -10.048 1.00 83.45 O
ATOM 2 P U B 265 88.865 102.130 -11.437 1.00 86.94 P
ATOM 3 OP1 U B 265 89.570 103.100 -12.330 1.00 86.33 O
ATOM 4 OP2 U B 265 87.426 102.348 -11.119 1.00 85.78 O
ATOM 5 O5' U B 265 89.009 100.649 -12.033 1.00 88.48 O
ATOM 6 C5' U B 265 90.312 100.094 -12.387 1.00 91.24 C
ATOM 7 C4' U B 265 90.189 98.636 -12.815 1.00 92.33 C
ATOM 8 O4' U B 265 89.960 97.757 -11.676 1.00 92.33 O
ATOM 9 C3' U B 265 89.030 98.319 -13.740 1.00 93.78 C
ATOM 10 O3' U B 265 89.257 98.739 -15.068 1.00 95.72 O
ATOM 11 C2' U B 265 88.863 96.812 -13.571 1.00 93.01 C
ATOM 12 O2' U B 265 89.749 95.994 -14.314 1.00 93.19 O
ATOM 13 C1' U B 265 89.136 96.663 -12.075 1.00 92.44 C
ATOM 14 N1 U B 265 87.874 96.713 -11.323 1.00 92.49 N
ATOM 15 C2 U B 265 87.266 95.508 -10.992 1.00 92.91 C
ATOM 16 O2 U B 265 87.732 94.421 -11.294 1.00 93.06 O
ATOM 17 N3 U B 265 86.084 95.625 -10.301 1.00 93.01 N
ATOM 18 C4 U B 265 85.458 96.796 -9.925 1.00 93.23 C
ATOM 19 O4 U B 265 84.416 96.740 -9.274 1.00 93.51 O
ATOM 20 C5 U B 265 86.144 97.993 -10.311 1.00 93.04 C
ATOM 21 C6 U B 265 87.300 97.912 -10.972 1.00 92.49 C
ATOM 22 P A B 266 88.004 98.974 -16.032 1.00 97.83 P
ATOM 23 OP1 A B 266 88.573 99.350 -17.352 1.00 98.13 O
ATOM 24 OP2 A B 266 87.023 99.877 -15.367 1.00 97.75 O
ATOM 25 O5' A B 266 87.334 97.530 -16.115 1.00 98.92 O
TER
Atoms:
OP1: (79.159,85.481,-6.235)
OP2: (79.316,88.012,-5.834)
C3': (83.293,86.772,-8.631)
C1': (82.892,88.359,-10.315)
C5': (80.910,85.912,-8.614)
O4': (81.748,87.523,-10.205)
C8: (81.468,90.025,-9.017)
O2': (84.825,86.925,-10.514)
C6: (83.211,93.061,-9.164)
C5: (82.640,91.785,-9.189)
C4: (83.336,90.798,-9.853)
P: (79.272,86.861,-6.775)
C4': (82.091,86.339,-9.445)
C2': (84.050,87.667,-9.595)
C2: (84.957,92.180,-10.392)
N1: (84.395,93.233,-9.790)
N3: (84.516,90.929,-10.481)
N6: (82.648,94.104,-8.558)
N7: (81.461,91.282,-8.660)
N9: (82.570,89.665,-9.746)
O5': (80.593,86.936,-7.661)
O3': (84.052,85.651,-8.249)
OP2: (79.316,88.012,-5.834)
C3': (83.293,86.772,-8.631)
C1': (82.892,88.359,-10.315)
C5': (80.910,85.912,-8.614)
O4': (81.748,87.523,-10.205)
C8: (81.468,90.025,-9.017)
O2': (84.825,86.925,-10.514)
C6: (83.211,93.061,-9.164)
C5: (82.640,91.785,-9.189)
C4: (83.336,90.798,-9.853)
P: (79.272,86.861,-6.775)
C4': (82.091,86.339,-9.445)
C2': (84.050,87.667,-9.595)
C2: (84.957,92.180,-10.392)
N1: (84.395,93.233,-9.790)
N3: (84.516,90.929,-10.481)
N6: (82.648,94.104,-8.558)
N7: (81.461,91.282,-8.660)
N9: (82.570,89.665,-9.746)
O5': (80.593,86.936,-7.661)
O3': (84.052,85.651,-8.249)
C4: (85.458,96.796,-9.925)
N3: (86.084,95.625,-10.301)
OP1: (89.570,103.100,-12.330)
OP2: (87.426,102.348,-11.119)
C2: (87.266,95.508,-10.992)
C1': (89.136,96.663,-12.075)
C3': (89.030,98.319,-13.740)
O5': (89.009,100.649,-12.033)
O4': (89.960,97.757,-11.676)
C5': (90.312,100.094,-12.387)
P: (88.865,102.130,-11.437)
C4': (90.189,98.636,-12.815)
C2': (88.863,96.812,-13.571)
O2': (89.749,95.994,-14.314)
N1: (87.874,96.713,-11.323)
O4: (84.416,96.740,-9.274)
O2: (87.732,94.421,-11.294)
C6: (87.300,97.912,-10.972)
C5: (86.144,97.993,-10.311)
O3': (89.257,98.739,-15.068)
N3: (86.084,95.625,-10.301)
OP1: (89.570,103.100,-12.330)
OP2: (87.426,102.348,-11.119)
C2: (87.266,95.508,-10.992)
C1': (89.136,96.663,-12.075)
C3': (89.030,98.319,-13.740)
O5': (89.009,100.649,-12.033)
O4': (89.960,97.757,-11.676)
C5': (90.312,100.094,-12.387)
P: (88.865,102.130,-11.437)
C4': (90.189,98.636,-12.815)
C2': (88.863,96.812,-13.571)
O2': (89.749,95.994,-14.314)
N1: (87.874,96.713,-11.323)
O4: (84.416,96.740,-9.274)
O2: (87.732,94.421,-11.294)
C6: (87.300,97.912,-10.972)
C5: (86.144,97.993,-10.311)
O3': (89.257,98.739,-15.068)
Image (generated by PyMOL):