Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12605:12587
Extra
PDB:
ATOM 1 O3' C A2604 3.875 -13.244 23.880 1.00 48.61 O
ATOM 2 P A A2605 5.050 -13.337 24.943 1.00 51.68 P
ATOM 3 OP1 A A2605 4.758 -14.540 25.802 1.00 51.54 O
ATOM 4 OP2 A A2605 5.173 -11.984 25.594 1.00 51.44 O
ATOM 5 O5' A A2605 6.326 -13.627 24.002 1.00 51.71 O
ATOM 6 C5' A A2605 7.508 -12.824 24.028 1.00 51.45 C
ATOM 7 C4' A A2605 8.179 -12.833 22.670 1.00 51.73 C
ATOM 8 O4' A A2605 7.481 -11.926 21.780 1.00 52.10 O
ATOM 9 C3' A A2605 9.639 -12.387 22.601 1.00 51.46 C
ATOM 10 O3' A A2605 10.548 -13.427 22.913 1.00 51.24 O
ATOM 11 C2' A A2605 9.760 -11.930 21.157 1.00 51.87 C
ATOM 12 O2' A A2605 9.879 -13.060 20.295 1.00 52.14 O
ATOM 13 C1' A A2605 8.395 -11.271 20.929 1.00 52.17 C
ATOM 14 N9 A A2605 8.403 -9.848 21.308 1.00 52.04 N
ATOM 15 C8 A A2605 7.751 -9.402 22.408 1.00 51.82 C
ATOM 16 N7 A A2605 7.850 -8.133 22.628 1.00 51.74 N
ATOM 17 C5 A A2605 8.643 -7.717 21.616 1.00 51.89 C
ATOM 18 C6 A A2605 9.087 -6.452 21.345 1.00 51.90 C
ATOM 19 N6 A A2605 8.751 -5.451 22.142 1.00 51.74 N
ATOM 20 N1 A A2605 9.836 -6.245 20.259 1.00 52.09 N
ATOM 21 C2 A A2605 10.100 -7.312 19.510 1.00 52.27 C
ATOM 22 N3 A A2605 9.721 -8.580 19.669 1.00 52.29 N
ATOM 23 C4 A A2605 8.981 -8.728 20.772 1.00 52.08 C
ATOM 24 P U A2606 11.619 -13.254 24.092 1.00 48.57 P
ATOM 25 OP1 U A2606 12.177 -14.588 24.383 1.00 48.45 O
ATOM 26 OP2 U A2606 10.963 -12.521 25.175 1.00 48.36 O
ATOM 27 O5' U A2606 12.729 -12.342 23.439 1.00 48.55 O
TER
ATOM 1 O3' G B2586 13.563 2.829 18.382 1.00 46.13 O
ATOM 2 P U B2587 12.617 2.308 17.233 1.00 48.19 P
ATOM 3 OP1 U B2587 12.884 3.107 16.016 1.00 48.60 O
ATOM 4 OP2 U B2587 11.246 2.275 17.775 1.00 48.26 O
ATOM 5 O5' U B2587 13.161 0.846 17.034 1.00 48.08 O
ATOM 6 C5' U B2587 14.224 0.592 16.130 1.00 48.18 C
ATOM 7 C4' U B2587 14.374 -0.874 15.910 1.00 48.16 C
ATOM 8 O4' U B2587 14.402 -1.525 17.192 1.00 47.71 O
ATOM 9 C3' U B2587 13.219 -1.548 15.205 1.00 48.56 C
ATOM 10 O3' U B2587 13.282 -1.418 13.811 1.00 49.03 O
ATOM 11 C2' U B2587 13.348 -2.975 15.668 1.00 48.34 C
ATOM 12 O2' U B2587 14.421 -3.604 14.986 1.00 48.37 O
ATOM 13 C1' U B2587 13.777 -2.771 17.101 1.00 47.80 C
ATOM 14 N1 U B2587 12.696 -2.803 18.073 1.00 47.67 N
ATOM 15 C2 U B2587 12.121 -3.999 18.398 1.00 47.63 C
ATOM 16 O2 U B2587 12.373 -5.019 17.801 1.00 47.76 O
ATOM 17 N3 U B2587 11.221 -3.975 19.420 1.00 47.47 N
ATOM 18 C4 U B2587 10.902 -2.879 20.165 1.00 47.33 C
ATOM 19 O4 U B2587 10.090 -2.998 21.090 1.00 47.19 O
ATOM 20 C5 U B2587 11.587 -1.675 19.772 1.00 47.37 C
ATOM 21 C6 U B2587 12.468 -1.670 18.785 1.00 47.52 C
ATOM 22 P C B2588 11.967 -1.084 12.995 1.00 50.42 P
ATOM 23 OP1 C B2588 12.387 -0.682 11.639 1.00 50.85 O
ATOM 24 OP2 C B2588 11.222 -0.137 13.812 1.00 50.32 O
ATOM 25 O5' C B2588 11.189 -2.485 12.947 1.00 50.53 O
TER
ATOM 2 P A A2605 5.050 -13.337 24.943 1.00 51.68 P
ATOM 3 OP1 A A2605 4.758 -14.540 25.802 1.00 51.54 O
ATOM 4 OP2 A A2605 5.173 -11.984 25.594 1.00 51.44 O
ATOM 5 O5' A A2605 6.326 -13.627 24.002 1.00 51.71 O
ATOM 6 C5' A A2605 7.508 -12.824 24.028 1.00 51.45 C
ATOM 7 C4' A A2605 8.179 -12.833 22.670 1.00 51.73 C
ATOM 8 O4' A A2605 7.481 -11.926 21.780 1.00 52.10 O
ATOM 9 C3' A A2605 9.639 -12.387 22.601 1.00 51.46 C
ATOM 10 O3' A A2605 10.548 -13.427 22.913 1.00 51.24 O
ATOM 11 C2' A A2605 9.760 -11.930 21.157 1.00 51.87 C
ATOM 12 O2' A A2605 9.879 -13.060 20.295 1.00 52.14 O
ATOM 13 C1' A A2605 8.395 -11.271 20.929 1.00 52.17 C
ATOM 14 N9 A A2605 8.403 -9.848 21.308 1.00 52.04 N
ATOM 15 C8 A A2605 7.751 -9.402 22.408 1.00 51.82 C
ATOM 16 N7 A A2605 7.850 -8.133 22.628 1.00 51.74 N
ATOM 17 C5 A A2605 8.643 -7.717 21.616 1.00 51.89 C
ATOM 18 C6 A A2605 9.087 -6.452 21.345 1.00 51.90 C
ATOM 19 N6 A A2605 8.751 -5.451 22.142 1.00 51.74 N
ATOM 20 N1 A A2605 9.836 -6.245 20.259 1.00 52.09 N
ATOM 21 C2 A A2605 10.100 -7.312 19.510 1.00 52.27 C
ATOM 22 N3 A A2605 9.721 -8.580 19.669 1.00 52.29 N
ATOM 23 C4 A A2605 8.981 -8.728 20.772 1.00 52.08 C
ATOM 24 P U A2606 11.619 -13.254 24.092 1.00 48.57 P
ATOM 25 OP1 U A2606 12.177 -14.588 24.383 1.00 48.45 O
ATOM 26 OP2 U A2606 10.963 -12.521 25.175 1.00 48.36 O
ATOM 27 O5' U A2606 12.729 -12.342 23.439 1.00 48.55 O
TER
ATOM 1 O3' G B2586 13.563 2.829 18.382 1.00 46.13 O
ATOM 2 P U B2587 12.617 2.308 17.233 1.00 48.19 P
ATOM 3 OP1 U B2587 12.884 3.107 16.016 1.00 48.60 O
ATOM 4 OP2 U B2587 11.246 2.275 17.775 1.00 48.26 O
ATOM 5 O5' U B2587 13.161 0.846 17.034 1.00 48.08 O
ATOM 6 C5' U B2587 14.224 0.592 16.130 1.00 48.18 C
ATOM 7 C4' U B2587 14.374 -0.874 15.910 1.00 48.16 C
ATOM 8 O4' U B2587 14.402 -1.525 17.192 1.00 47.71 O
ATOM 9 C3' U B2587 13.219 -1.548 15.205 1.00 48.56 C
ATOM 10 O3' U B2587 13.282 -1.418 13.811 1.00 49.03 O
ATOM 11 C2' U B2587 13.348 -2.975 15.668 1.00 48.34 C
ATOM 12 O2' U B2587 14.421 -3.604 14.986 1.00 48.37 O
ATOM 13 C1' U B2587 13.777 -2.771 17.101 1.00 47.80 C
ATOM 14 N1 U B2587 12.696 -2.803 18.073 1.00 47.67 N
ATOM 15 C2 U B2587 12.121 -3.999 18.398 1.00 47.63 C
ATOM 16 O2 U B2587 12.373 -5.019 17.801 1.00 47.76 O
ATOM 17 N3 U B2587 11.221 -3.975 19.420 1.00 47.47 N
ATOM 18 C4 U B2587 10.902 -2.879 20.165 1.00 47.33 C
ATOM 19 O4 U B2587 10.090 -2.998 21.090 1.00 47.19 O
ATOM 20 C5 U B2587 11.587 -1.675 19.772 1.00 47.37 C
ATOM 21 C6 U B2587 12.468 -1.670 18.785 1.00 47.52 C
ATOM 22 P C B2588 11.967 -1.084 12.995 1.00 50.42 P
ATOM 23 OP1 C B2588 12.387 -0.682 11.639 1.00 50.85 O
ATOM 24 OP2 C B2588 11.222 -0.137 13.812 1.00 50.32 O
ATOM 25 O5' C B2588 11.189 -2.485 12.947 1.00 50.53 O
TER
Atoms:
OP1: (4.758,-14.540,25.802)
OP2: (5.173,-11.984,25.594)
C3': (9.639,-12.387,22.601)
C1': (8.395,-11.271,20.929)
C5': (7.508,-12.824,24.028)
O4': (7.481,-11.926,21.780)
C8: (7.751,-9.402,22.408)
O2': (9.879,-13.060,20.295)
C6: (9.087,-6.452,21.345)
C5: (8.643,-7.717,21.616)
C4: (8.981,-8.728,20.772)
P: (5.050,-13.337,24.943)
C4': (8.179,-12.833,22.670)
C2': (9.760,-11.930,21.157)
C2: (10.100,-7.312,19.510)
N1: (9.836,-6.245,20.259)
N3: (9.721,-8.580,19.669)
N6: (8.751,-5.451,22.142)
N7: (7.850,-8.133,22.628)
N9: (8.403,-9.848,21.308)
O5': (6.326,-13.627,24.002)
O3': (10.548,-13.427,22.913)
OP2: (5.173,-11.984,25.594)
C3': (9.639,-12.387,22.601)
C1': (8.395,-11.271,20.929)
C5': (7.508,-12.824,24.028)
O4': (7.481,-11.926,21.780)
C8: (7.751,-9.402,22.408)
O2': (9.879,-13.060,20.295)
C6: (9.087,-6.452,21.345)
C5: (8.643,-7.717,21.616)
C4: (8.981,-8.728,20.772)
P: (5.050,-13.337,24.943)
C4': (8.179,-12.833,22.670)
C2': (9.760,-11.930,21.157)
C2: (10.100,-7.312,19.510)
N1: (9.836,-6.245,20.259)
N3: (9.721,-8.580,19.669)
N6: (8.751,-5.451,22.142)
N7: (7.850,-8.133,22.628)
N9: (8.403,-9.848,21.308)
O5': (6.326,-13.627,24.002)
O3': (10.548,-13.427,22.913)
C4: (10.902,-2.879,20.165)
N3: (11.221,-3.975,19.420)
OP1: (12.884,3.107,16.016)
OP2: (11.246,2.275,17.775)
C2: (12.121,-3.999,18.398)
C1': (13.777,-2.771,17.101)
C3': (13.219,-1.548,15.205)
O5': (13.161,0.846,17.034)
O4': (14.402,-1.525,17.192)
C5': (14.224,0.592,16.130)
P: (12.617,2.308,17.233)
C4': (14.374,-0.874,15.910)
C2': (13.348,-2.975,15.668)
O2': (14.421,-3.604,14.986)
N1: (12.696,-2.803,18.073)
O4: (10.090,-2.998,21.090)
O2: (12.373,-5.019,17.801)
C6: (12.468,-1.670,18.785)
C5: (11.587,-1.675,19.772)
O3': (13.282,-1.418,13.811)
N3: (11.221,-3.975,19.420)
OP1: (12.884,3.107,16.016)
OP2: (11.246,2.275,17.775)
C2: (12.121,-3.999,18.398)
C1': (13.777,-2.771,17.101)
C3': (13.219,-1.548,15.205)
O5': (13.161,0.846,17.034)
O4': (14.402,-1.525,17.192)
C5': (14.224,0.592,16.130)
P: (12.617,2.308,17.233)
C4': (14.374,-0.874,15.910)
C2': (13.348,-2.975,15.668)
O2': (14.421,-3.604,14.986)
N1: (12.696,-2.803,18.073)
O4: (10.090,-2.998,21.090)
O2: (12.373,-5.019,17.801)
C6: (12.468,-1.670,18.785)
C5: (11.587,-1.675,19.772)
O3': (13.282,-1.418,13.811)
Image (generated by PyMOL):