Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12446:12404
Extra
PDB:
ATOM 1 O3' C A2445 13.593 -60.137 48.631 1.00 47.61 O
ATOM 2 P A A2446 13.257 -58.963 49.674 1.00 50.61 P
ATOM 3 OP1 A A2446 13.864 -57.717 49.154 1.00 50.22 O
ATOM 4 OP2 A A2446 13.619 -59.435 50.995 1.00 50.53 O
ATOM 5 O5' A A2446 11.695 -58.878 49.611 1.00 50.80 O
ATOM 6 C5' A A2446 11.042 -57.646 49.488 1.00 50.53 C
ATOM 7 C4' A A2446 10.666 -57.064 50.814 1.00 50.22 C
ATOM 8 O4' A A2446 11.418 -57.653 51.894 1.00 50.16 O
ATOM 9 C3' A A2446 10.978 -55.624 50.924 1.00 49.74 C
ATOM 10 O3' A A2446 10.053 -54.854 50.226 1.00 49.75 O
ATOM 11 C2' A A2446 11.041 -55.368 52.428 1.00 49.47 C
ATOM 12 O2' A A2446 9.776 -55.113 52.954 1.00 49.51 O
ATOM 13 C1' A A2446 11.497 -56.714 52.953 1.00 49.74 C
ATOM 14 N9 A A2446 12.868 -56.667 53.518 1.00 49.48 N
ATOM 15 C8 A A2446 13.951 -57.489 53.304 1.00 49.61 C
ATOM 16 N7 A A2446 15.012 -57.211 54.031 1.00 49.32 N
ATOM 17 C5 A A2446 14.588 -56.136 54.801 1.00 48.97 C
ATOM 18 C6 A A2446 15.240 -55.394 55.790 1.00 48.58 C
ATOM 19 N6 A A2446 16.503 -55.673 56.132 1.00 48.49 N
ATOM 20 N1 A A2446 14.567 -54.364 56.377 1.00 48.31 N
ATOM 21 C2 A A2446 13.325 -54.143 56.004 1.00 48.44 C
ATOM 22 N3 A A2446 12.594 -54.802 55.098 1.00 48.80 N
ATOM 23 C4 A A2446 13.287 -55.789 54.506 1.00 49.06 C
ATOM 24 P A A2447 10.548 -53.977 48.996 1.00 49.79 P
ATOM 25 OP1 A A2447 9.360 -53.727 48.104 1.00 50.02 O
ATOM 26 OP2 A A2447 11.756 -54.653 48.438 1.00 49.89 O
ATOM 27 O5' A A2447 10.936 -52.651 49.738 1.00 49.26 O
TER
ATOM 1 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 2 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 3 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 4 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 5 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
ATOM 6 C5' U B2404 15.364 -51.074 64.492 1.00 52.80 C
ATOM 7 C4' U B2404 14.423 -50.754 63.370 1.00 52.87 C
ATOM 8 O4' U B2404 15.176 -50.343 62.202 1.00 52.74 O
ATOM 9 C3' U B2404 13.559 -51.909 62.880 1.00 53.30 C
ATOM 10 O3' U B2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 11 C2' U B2404 13.264 -51.524 61.434 1.00 53.31 C
ATOM 12 O2' U B2404 12.233 -50.565 61.373 1.00 53.20 O
ATOM 13 C1' U B2404 14.551 -50.826 61.028 1.00 53.01 C
ATOM 14 N1 U B2404 15.481 -51.733 60.330 1.00 53.18 N
ATOM 15 C2 U B2404 15.141 -52.106 59.059 1.00 53.41 C
ATOM 16 O2 U B2404 14.094 -51.719 58.539 1.00 53.47 O
ATOM 17 N3 U B2404 16.055 -52.908 58.429 1.00 53.57 N
ATOM 18 C4 U B2404 17.214 -53.377 58.950 1.00 53.53 C
ATOM 19 O4 U B2404 17.918 -54.122 58.296 1.00 53.71 O
ATOM 20 C5 U B2404 17.493 -52.928 60.250 1.00 53.29 C
ATOM 21 C6 U B2404 16.648 -52.134 60.878 1.00 53.12 C
ATOM 22 P C B2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 23 OP1 C B2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 24 OP2 C B2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 25 O5' C B2405 11.769 -54.171 62.510 1.00 46.55 O
TER
ATOM 2 P A A2446 13.257 -58.963 49.674 1.00 50.61 P
ATOM 3 OP1 A A2446 13.864 -57.717 49.154 1.00 50.22 O
ATOM 4 OP2 A A2446 13.619 -59.435 50.995 1.00 50.53 O
ATOM 5 O5' A A2446 11.695 -58.878 49.611 1.00 50.80 O
ATOM 6 C5' A A2446 11.042 -57.646 49.488 1.00 50.53 C
ATOM 7 C4' A A2446 10.666 -57.064 50.814 1.00 50.22 C
ATOM 8 O4' A A2446 11.418 -57.653 51.894 1.00 50.16 O
ATOM 9 C3' A A2446 10.978 -55.624 50.924 1.00 49.74 C
ATOM 10 O3' A A2446 10.053 -54.854 50.226 1.00 49.75 O
ATOM 11 C2' A A2446 11.041 -55.368 52.428 1.00 49.47 C
ATOM 12 O2' A A2446 9.776 -55.113 52.954 1.00 49.51 O
ATOM 13 C1' A A2446 11.497 -56.714 52.953 1.00 49.74 C
ATOM 14 N9 A A2446 12.868 -56.667 53.518 1.00 49.48 N
ATOM 15 C8 A A2446 13.951 -57.489 53.304 1.00 49.61 C
ATOM 16 N7 A A2446 15.012 -57.211 54.031 1.00 49.32 N
ATOM 17 C5 A A2446 14.588 -56.136 54.801 1.00 48.97 C
ATOM 18 C6 A A2446 15.240 -55.394 55.790 1.00 48.58 C
ATOM 19 N6 A A2446 16.503 -55.673 56.132 1.00 48.49 N
ATOM 20 N1 A A2446 14.567 -54.364 56.377 1.00 48.31 N
ATOM 21 C2 A A2446 13.325 -54.143 56.004 1.00 48.44 C
ATOM 22 N3 A A2446 12.594 -54.802 55.098 1.00 48.80 N
ATOM 23 C4 A A2446 13.287 -55.789 54.506 1.00 49.06 C
ATOM 24 P A A2447 10.548 -53.977 48.996 1.00 49.79 P
ATOM 25 OP1 A A2447 9.360 -53.727 48.104 1.00 50.02 O
ATOM 26 OP2 A A2447 11.756 -54.653 48.438 1.00 49.89 O
ATOM 27 O5' A A2447 10.936 -52.651 49.738 1.00 49.26 O
TER
ATOM 1 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 2 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 3 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 4 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 5 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
ATOM 6 C5' U B2404 15.364 -51.074 64.492 1.00 52.80 C
ATOM 7 C4' U B2404 14.423 -50.754 63.370 1.00 52.87 C
ATOM 8 O4' U B2404 15.176 -50.343 62.202 1.00 52.74 O
ATOM 9 C3' U B2404 13.559 -51.909 62.880 1.00 53.30 C
ATOM 10 O3' U B2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 11 C2' U B2404 13.264 -51.524 61.434 1.00 53.31 C
ATOM 12 O2' U B2404 12.233 -50.565 61.373 1.00 53.20 O
ATOM 13 C1' U B2404 14.551 -50.826 61.028 1.00 53.01 C
ATOM 14 N1 U B2404 15.481 -51.733 60.330 1.00 53.18 N
ATOM 15 C2 U B2404 15.141 -52.106 59.059 1.00 53.41 C
ATOM 16 O2 U B2404 14.094 -51.719 58.539 1.00 53.47 O
ATOM 17 N3 U B2404 16.055 -52.908 58.429 1.00 53.57 N
ATOM 18 C4 U B2404 17.214 -53.377 58.950 1.00 53.53 C
ATOM 19 O4 U B2404 17.918 -54.122 58.296 1.00 53.71 O
ATOM 20 C5 U B2404 17.493 -52.928 60.250 1.00 53.29 C
ATOM 21 C6 U B2404 16.648 -52.134 60.878 1.00 53.12 C
ATOM 22 P C B2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 23 OP1 C B2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 24 OP2 C B2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 25 O5' C B2405 11.769 -54.171 62.510 1.00 46.55 O
TER
Atoms:
OP1: (13.864,-57.717,49.154)
OP2: (13.619,-59.435,50.995)
C3': (10.978,-55.624,50.924)
C1': (11.497,-56.714,52.953)
C5': (11.042,-57.646,49.488)
O4': (11.418,-57.653,51.894)
C8: (13.951,-57.489,53.304)
O2': (9.776,-55.113,52.954)
C6: (15.240,-55.394,55.790)
C5: (14.588,-56.136,54.801)
C4: (13.287,-55.789,54.506)
P: (13.257,-58.963,49.674)
C4': (10.666,-57.064,50.814)
C2': (11.041,-55.368,52.428)
C2: (13.325,-54.143,56.004)
N1: (14.567,-54.364,56.377)
N3: (12.594,-54.802,55.098)
N6: (16.503,-55.673,56.132)
N7: (15.012,-57.211,54.031)
N9: (12.868,-56.667,53.518)
O5': (11.695,-58.878,49.611)
O3': (10.053,-54.854,50.226)
OP2: (13.619,-59.435,50.995)
C3': (10.978,-55.624,50.924)
C1': (11.497,-56.714,52.953)
C5': (11.042,-57.646,49.488)
O4': (11.418,-57.653,51.894)
C8: (13.951,-57.489,53.304)
O2': (9.776,-55.113,52.954)
C6: (15.240,-55.394,55.790)
C5: (14.588,-56.136,54.801)
C4: (13.287,-55.789,54.506)
P: (13.257,-58.963,49.674)
C4': (10.666,-57.064,50.814)
C2': (11.041,-55.368,52.428)
C2: (13.325,-54.143,56.004)
N1: (14.567,-54.364,56.377)
N3: (12.594,-54.802,55.098)
N6: (16.503,-55.673,56.132)
N7: (15.012,-57.211,54.031)
N9: (12.868,-56.667,53.518)
O5': (11.695,-58.878,49.611)
O3': (10.053,-54.854,50.226)
C4: (17.214,-53.377,58.950)
N3: (16.055,-52.908,58.429)
OP1: (17.309,-49.694,67.115)
OP2: (18.074,-50.277,64.748)
C2: (15.141,-52.106,59.059)
C1': (14.551,-50.826,61.028)
C3': (13.559,-51.909,62.880)
O5': (15.632,-49.934,65.266)
O4': (15.176,-50.343,62.202)
C5': (15.364,-51.074,64.492)
P: (17.118,-49.568,65.658)
C4': (14.423,-50.754,63.370)
C2': (13.264,-51.524,61.434)
O2': (12.233,-50.565,61.373)
N1: (15.481,-51.733,60.330)
O4: (17.918,-54.122,58.296)
O2: (14.094,-51.719,58.539)
C6: (16.648,-52.134,60.878)
C5: (17.493,-52.928,60.250)
O3': (12.402,-52.088,63.669)
N3: (16.055,-52.908,58.429)
OP1: (17.309,-49.694,67.115)
OP2: (18.074,-50.277,64.748)
C2: (15.141,-52.106,59.059)
C1': (14.551,-50.826,61.028)
C3': (13.559,-51.909,62.880)
O5': (15.632,-49.934,65.266)
O4': (15.176,-50.343,62.202)
C5': (15.364,-51.074,64.492)
P: (17.118,-49.568,65.658)
C4': (14.423,-50.754,63.370)
C2': (13.264,-51.524,61.434)
O2': (12.233,-50.565,61.373)
N1: (15.481,-51.733,60.330)
O4: (17.918,-54.122,58.296)
O2: (14.094,-51.719,58.539)
C6: (16.648,-52.134,60.878)
C5: (17.493,-52.928,60.250)
O3': (12.402,-52.088,63.669)
Image (generated by PyMOL):