ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2CKY:A3:A75

Extra

PDB:
ATOM 1 O3' G A 2 13.895 -5.576 -59.285 1.00 52.87 O
ATOM 2 P A A 3 13.563 -4.061 -59.714 1.00 53.53 P
ATOM 3 OP1 A A 3 14.375 -3.110 -58.899 1.00 51.83 O
ATOM 4 OP2 A A 3 12.100 -3.813 -59.723 1.00 51.16 O
ATOM 5 O5' A A 3 14.037 -4.171 -61.244 1.00 53.77 O
ATOM 6 C5' A A 3 15.343 -4.565 -61.618 1.00 55.26 C
ATOM 7 C4' A A 3 15.431 -4.639 -63.127 1.00 57.29 C
ATOM 8 O4' A A 3 14.545 -5.675 -63.596 1.00 57.16 O
ATOM 9 C3' A A 3 14.941 -3.418 -63.897 1.00 57.45 C
ATOM 10 O3' A A 3 15.918 -2.362 -63.984 1.00 60.08 O
ATOM 11 C2' A A 3 14.628 -4.044 -65.246 1.00 58.32 C
ATOM 12 O2' A A 3 15.768 -4.433 -65.980 1.00 61.29 O
ATOM 13 C1' A A 3 13.901 -5.290 -64.802 1.00 56.09 C
ATOM 14 N9 A A 3 12.462 -5.148 -64.565 1.00 53.38 N
ATOM 15 C8 A A 3 11.825 -4.888 -63.374 1.00 50.26 C
ATOM 16 N7 A A 3 10.516 -4.854 -63.471 1.00 49.09 N
ATOM 17 C5 A A 3 10.270 -5.108 -64.812 1.00 50.28 C
ATOM 18 C6 A A 3 9.077 -5.204 -65.551 1.00 50.33 C
ATOM 19 N6 A A 3 7.867 -5.049 -65.006 1.00 48.75 N
ATOM 20 N1 A A 3 9.186 -5.465 -66.867 1.00 52.93 N
ATOM 21 C2 A A 3 10.402 -5.625 -67.409 1.00 55.15 C
ATOM 22 N3 A A 3 11.595 -5.561 -66.814 1.00 55.03 N
ATOM 23 C4 A A 3 11.458 -5.292 -65.503 1.00 52.99 C
ATOM 24 P C A 4 15.421 -0.833 -63.894 1.00 60.52 P
ATOM 25 OP1 C A 4 16.605 0.071 -63.874 1.00 61.99 O
ATOM 26 OP2 C A 4 14.451 -0.664 -62.769 1.00 55.97 O
ATOM 27 O5' C A 4 14.727 -0.752 -65.333 1.00 58.09 O
TER

ATOM 1 O3' G B 74 1.601 -4.253 -72.668 1.00 78.46 O
ATOM 2 P U B 75 1.747 -5.856 -72.584 1.00 77.88 P
ATOM 3 OP1 U B 75 0.984 -6.406 -73.735 1.00 81.13 O
ATOM 4 OP2 U B 75 1.405 -6.311 -71.213 1.00 73.19 O
ATOM 5 O5' U B 75 3.317 -6.077 -72.862 1.00 76.62 O
ATOM 6 C5' U B 75 3.914 -5.568 -74.070 1.00 77.37 C
ATOM 7 C4' U B 75 5.426 -5.409 -73.980 1.00 76.39 C
ATOM 8 O4' U B 75 5.790 -4.388 -73.025 1.00 72.32 O
ATOM 9 C3' U B 75 6.199 -6.618 -73.490 1.00 75.78 C
ATOM 10 O3' U B 75 6.354 -7.511 -74.571 1.00 80.57 O
ATOM 11 C2' U B 75 7.497 -5.981 -73.006 1.00 73.68 C
ATOM 12 O2' U B 75 8.349 -5.539 -74.040 1.00 76.60 O
ATOM 13 C1' U B 75 6.910 -4.804 -72.259 1.00 68.84 C
ATOM 14 N1 U B 75 6.479 -5.067 -70.840 1.00 63.33 N
ATOM 15 C2 U B 75 7.443 -5.170 -69.870 1.00 61.39 C
ATOM 16 O2 U B 75 8.631 -5.098 -70.125 1.00 63.74 O
ATOM 17 N3 U B 75 6.983 -5.395 -68.597 1.00 57.16 N
ATOM 18 C4 U B 75 5.668 -5.488 -68.211 1.00 55.30 C
ATOM 19 O4 U B 75 5.407 -5.688 -67.040 1.00 53.09 O
ATOM 20 C5 U B 75 4.708 -5.364 -69.261 1.00 57.08 C
ATOM 21 C6 U B 75 5.144 -5.159 -70.505 1.00 60.73 C
ATOM 22 P C B 76 6.086 -9.075 -74.379 1.00 81.91 P
ATOM 23 OP1 C B 76 5.991 -9.683 -75.736 1.00 85.22 O
ATOM 24 OP2 C B 76 5.010 -9.283 -73.369 1.00 76.81 O
ATOM 25 O5' C B 76 7.496 -9.514 -73.746 1.00 81.17 O
TER

Atoms:
OP1: (14.375,-3.110,-58.899)
OP2: (12.100,-3.813,-59.723)
C3': (14.941,-3.418,-63.897)
C1': (13.901,-5.290,-64.802)
C5': (15.343,-4.565,-61.618)
O4': (14.545,-5.675,-63.596)
C8: (11.825,-4.888,-63.374)
O2': (15.768,-4.433,-65.980)
C6: (9.077,-5.204,-65.551)
C5: (10.270,-5.108,-64.812)
C4: (11.458,-5.292,-65.503)
P: (13.563,-4.061,-59.714)
C4': (15.431,-4.639,-63.127)
C2': (14.628,-4.044,-65.246)
C2: (10.402,-5.625,-67.409)
N1: (9.186,-5.465,-66.867)
N3: (11.595,-5.561,-66.814)
N6: (7.867,-5.049,-65.006)
N7: (10.516,-4.854,-63.471)
N9: (12.462,-5.148,-64.565)
O5': (14.037,-4.171,-61.244)
O3': (15.918,-2.362,-63.984)
C4: (5.668,-5.488,-68.211)
N3: (6.983,-5.395,-68.597)
OP1: (0.984,-6.406,-73.735)
OP2: (1.405,-6.311,-71.213)
C2: (7.443,-5.170,-69.870)
C1': (6.910,-4.804,-72.259)
C3': (6.199,-6.618,-73.490)
O5': (3.317,-6.077,-72.862)
O4': (5.790,-4.388,-73.025)
C5': (3.914,-5.568,-74.070)
P: (1.747,-5.856,-72.584)
C4': (5.426,-5.409,-73.980)
C2': (7.497,-5.981,-73.006)
O2': (8.349,-5.539,-74.040)
N1: (6.479,-5.067,-70.840)
O4: (5.407,-5.688,-67.040)
O2: (8.631,-5.098,-70.125)
C6: (5.144,-5.159,-70.505)
C5: (4.708,-5.364,-69.261)
O3': (6.354,-7.511,-74.571)
Image (generated by PyMOL):
PyMOL image
show in jmol