Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11005:1932
Extra
PDB:
ATOM 1 O3' U A1004 54.165 -54.552 37.059 1.00 41.56 O
ATOM 2 P A A1005 55.721 -54.281 36.773 1.00 46.38 P
ATOM 3 OP1 A A1005 56.484 -55.050 37.797 1.00 46.47 O
ATOM 4 OP2 A A1005 55.910 -52.813 36.684 1.00 45.97 O
ATOM 5 O5' A A1005 55.922 -54.928 35.348 1.00 46.86 O
ATOM 6 C5' A A1005 55.865 -56.325 35.184 1.00 47.32 C
ATOM 7 C4' A A1005 56.135 -56.684 33.765 1.00 47.73 C
ATOM 8 O4' A A1005 55.226 -55.967 32.916 1.00 47.64 O
ATOM 9 C3' A A1005 57.497 -56.287 33.255 1.00 47.79 C
ATOM 10 O3' A A1005 58.474 -57.228 33.614 1.00 48.08 O
ATOM 11 C2' A A1005 57.277 -56.181 31.752 1.00 48.07 C
ATOM 12 O2' A A1005 57.318 -57.476 31.151 1.00 48.62 O
ATOM 13 C1' A A1005 55.841 -55.671 31.692 1.00 47.84 C
ATOM 14 N9 A A1005 55.737 -54.223 31.478 1.00 47.44 N
ATOM 15 C8 A A1005 55.291 -53.354 32.415 1.00 46.95 C
ATOM 16 N7 A A1005 55.200 -52.121 31.984 1.00 46.68 N
ATOM 17 C5 A A1005 55.580 -52.193 30.680 1.00 47.01 C
ATOM 18 C6 A A1005 55.683 -51.210 29.699 1.00 46.96 C
ATOM 19 N6 A A1005 55.389 -49.942 29.908 1.00 46.54 N
ATOM 20 N1 A A1005 56.101 -51.586 28.469 1.00 47.37 N
ATOM 21 C2 A A1005 56.374 -52.884 28.255 1.00 47.82 C
ATOM 22 N3 A A1005 56.298 -53.904 29.125 1.00 47.91 N
ATOM 23 C4 A A1005 55.900 -53.485 30.340 1.00 47.48 C
ATOM 24 P A A1006 60.016 -56.797 33.785 1.00 47.13 P
ATOM 25 OP1 A A1006 60.744 -58.065 34.139 1.00 47.52 O
ATOM 26 OP2 A A1006 60.075 -55.644 34.728 1.00 46.58 O
ATOM 27 O5' A A1006 60.426 -56.324 32.319 1.00 47.31 O
TER
ATOM 1 O3' U B 931 56.512 -46.251 20.102 1.00 45.71 O
ATOM 2 P U B 932 55.075 -46.932 19.910 1.00 49.05 P
ATOM 3 OP1 U B 932 54.773 -46.879 18.462 1.00 49.46 O
ATOM 4 OP2 U B 932 54.146 -46.267 20.871 1.00 48.57 O
ATOM 5 O5' U B 932 55.332 -48.431 20.367 1.00 49.32 O
ATOM 6 C5' U B 932 55.984 -49.351 19.525 1.00 49.85 C
ATOM 7 C4' U B 932 56.472 -50.524 20.307 1.00 49.97 C
ATOM 8 O4' U B 932 57.154 -50.054 21.480 1.00 49.53 O
ATOM 9 C3' U B 932 55.413 -51.428 20.884 1.00 50.01 C
ATOM 10 O3' U B 932 54.828 -52.301 19.935 1.00 50.52 O
ATOM 11 C2' U B 932 56.172 -52.140 21.981 1.00 49.94 C
ATOM 12 O2' U B 932 57.011 -53.163 21.443 1.00 50.44 O
ATOM 13 C1' U B 932 57.053 -51.017 22.495 1.00 49.52 C
ATOM 14 N1 U B 932 56.485 -50.391 23.673 1.00 48.99 N
ATOM 15 C2 U B 932 56.729 -51.075 24.849 1.00 48.89 C
ATOM 16 O2 U B 932 57.354 -52.109 24.924 1.00 49.20 O
ATOM 17 N3 U B 932 56.216 -50.516 25.958 1.00 48.42 N
ATOM 18 C4 U B 932 55.515 -49.361 25.990 1.00 48.06 C
ATOM 19 O4 U B 932 55.146 -49.022 27.101 1.00 47.67 O
ATOM 20 C5 U B 932 55.283 -48.700 24.731 1.00 48.19 C
ATOM 21 C6 U B 932 55.772 -49.219 23.609 1.00 48.65 C
ATOM 22 P A B 933 53.205 -52.386 19.816 1.00 55.97 P
ATOM 23 OP1 A B 933 52.878 -52.573 18.357 1.00 56.45 O
ATOM 24 OP2 A B 933 52.645 -51.190 20.533 1.00 55.40 O
ATOM 25 O5' A B 933 52.849 -53.716 20.642 1.00 56.11 O
TER
ATOM 2 P A A1005 55.721 -54.281 36.773 1.00 46.38 P
ATOM 3 OP1 A A1005 56.484 -55.050 37.797 1.00 46.47 O
ATOM 4 OP2 A A1005 55.910 -52.813 36.684 1.00 45.97 O
ATOM 5 O5' A A1005 55.922 -54.928 35.348 1.00 46.86 O
ATOM 6 C5' A A1005 55.865 -56.325 35.184 1.00 47.32 C
ATOM 7 C4' A A1005 56.135 -56.684 33.765 1.00 47.73 C
ATOM 8 O4' A A1005 55.226 -55.967 32.916 1.00 47.64 O
ATOM 9 C3' A A1005 57.497 -56.287 33.255 1.00 47.79 C
ATOM 10 O3' A A1005 58.474 -57.228 33.614 1.00 48.08 O
ATOM 11 C2' A A1005 57.277 -56.181 31.752 1.00 48.07 C
ATOM 12 O2' A A1005 57.318 -57.476 31.151 1.00 48.62 O
ATOM 13 C1' A A1005 55.841 -55.671 31.692 1.00 47.84 C
ATOM 14 N9 A A1005 55.737 -54.223 31.478 1.00 47.44 N
ATOM 15 C8 A A1005 55.291 -53.354 32.415 1.00 46.95 C
ATOM 16 N7 A A1005 55.200 -52.121 31.984 1.00 46.68 N
ATOM 17 C5 A A1005 55.580 -52.193 30.680 1.00 47.01 C
ATOM 18 C6 A A1005 55.683 -51.210 29.699 1.00 46.96 C
ATOM 19 N6 A A1005 55.389 -49.942 29.908 1.00 46.54 N
ATOM 20 N1 A A1005 56.101 -51.586 28.469 1.00 47.37 N
ATOM 21 C2 A A1005 56.374 -52.884 28.255 1.00 47.82 C
ATOM 22 N3 A A1005 56.298 -53.904 29.125 1.00 47.91 N
ATOM 23 C4 A A1005 55.900 -53.485 30.340 1.00 47.48 C
ATOM 24 P A A1006 60.016 -56.797 33.785 1.00 47.13 P
ATOM 25 OP1 A A1006 60.744 -58.065 34.139 1.00 47.52 O
ATOM 26 OP2 A A1006 60.075 -55.644 34.728 1.00 46.58 O
ATOM 27 O5' A A1006 60.426 -56.324 32.319 1.00 47.31 O
TER
ATOM 1 O3' U B 931 56.512 -46.251 20.102 1.00 45.71 O
ATOM 2 P U B 932 55.075 -46.932 19.910 1.00 49.05 P
ATOM 3 OP1 U B 932 54.773 -46.879 18.462 1.00 49.46 O
ATOM 4 OP2 U B 932 54.146 -46.267 20.871 1.00 48.57 O
ATOM 5 O5' U B 932 55.332 -48.431 20.367 1.00 49.32 O
ATOM 6 C5' U B 932 55.984 -49.351 19.525 1.00 49.85 C
ATOM 7 C4' U B 932 56.472 -50.524 20.307 1.00 49.97 C
ATOM 8 O4' U B 932 57.154 -50.054 21.480 1.00 49.53 O
ATOM 9 C3' U B 932 55.413 -51.428 20.884 1.00 50.01 C
ATOM 10 O3' U B 932 54.828 -52.301 19.935 1.00 50.52 O
ATOM 11 C2' U B 932 56.172 -52.140 21.981 1.00 49.94 C
ATOM 12 O2' U B 932 57.011 -53.163 21.443 1.00 50.44 O
ATOM 13 C1' U B 932 57.053 -51.017 22.495 1.00 49.52 C
ATOM 14 N1 U B 932 56.485 -50.391 23.673 1.00 48.99 N
ATOM 15 C2 U B 932 56.729 -51.075 24.849 1.00 48.89 C
ATOM 16 O2 U B 932 57.354 -52.109 24.924 1.00 49.20 O
ATOM 17 N3 U B 932 56.216 -50.516 25.958 1.00 48.42 N
ATOM 18 C4 U B 932 55.515 -49.361 25.990 1.00 48.06 C
ATOM 19 O4 U B 932 55.146 -49.022 27.101 1.00 47.67 O
ATOM 20 C5 U B 932 55.283 -48.700 24.731 1.00 48.19 C
ATOM 21 C6 U B 932 55.772 -49.219 23.609 1.00 48.65 C
ATOM 22 P A B 933 53.205 -52.386 19.816 1.00 55.97 P
ATOM 23 OP1 A B 933 52.878 -52.573 18.357 1.00 56.45 O
ATOM 24 OP2 A B 933 52.645 -51.190 20.533 1.00 55.40 O
ATOM 25 O5' A B 933 52.849 -53.716 20.642 1.00 56.11 O
TER
Atoms:
OP1: (56.484,-55.050,37.797)
OP2: (55.910,-52.813,36.684)
C3': (57.497,-56.287,33.255)
C1': (55.841,-55.671,31.692)
C5': (55.865,-56.325,35.184)
O4': (55.226,-55.967,32.916)
C8: (55.291,-53.354,32.415)
O2': (57.318,-57.476,31.151)
C6: (55.683,-51.210,29.699)
C5: (55.580,-52.193,30.680)
C4: (55.900,-53.485,30.340)
P: (55.721,-54.281,36.773)
C4': (56.135,-56.684,33.765)
C2': (57.277,-56.181,31.752)
C2: (56.374,-52.884,28.255)
N1: (56.101,-51.586,28.469)
N3: (56.298,-53.904,29.125)
N6: (55.389,-49.942,29.908)
N7: (55.200,-52.121,31.984)
N9: (55.737,-54.223,31.478)
O5': (55.922,-54.928,35.348)
O3': (58.474,-57.228,33.614)
OP2: (55.910,-52.813,36.684)
C3': (57.497,-56.287,33.255)
C1': (55.841,-55.671,31.692)
C5': (55.865,-56.325,35.184)
O4': (55.226,-55.967,32.916)
C8: (55.291,-53.354,32.415)
O2': (57.318,-57.476,31.151)
C6: (55.683,-51.210,29.699)
C5: (55.580,-52.193,30.680)
C4: (55.900,-53.485,30.340)
P: (55.721,-54.281,36.773)
C4': (56.135,-56.684,33.765)
C2': (57.277,-56.181,31.752)
C2: (56.374,-52.884,28.255)
N1: (56.101,-51.586,28.469)
N3: (56.298,-53.904,29.125)
N6: (55.389,-49.942,29.908)
N7: (55.200,-52.121,31.984)
N9: (55.737,-54.223,31.478)
O5': (55.922,-54.928,35.348)
O3': (58.474,-57.228,33.614)
C4: (55.515,-49.361,25.990)
N3: (56.216,-50.516,25.958)
OP1: (54.773,-46.879,18.462)
OP2: (54.146,-46.267,20.871)
C2: (56.729,-51.075,24.849)
C1': (57.053,-51.017,22.495)
C3': (55.413,-51.428,20.884)
O5': (55.332,-48.431,20.367)
O4': (57.154,-50.054,21.480)
C5': (55.984,-49.351,19.525)
P: (55.075,-46.932,19.910)
C4': (56.472,-50.524,20.307)
C2': (56.172,-52.140,21.981)
O2': (57.011,-53.163,21.443)
N1: (56.485,-50.391,23.673)
O4: (55.146,-49.022,27.101)
O2: (57.354,-52.109,24.924)
C6: (55.772,-49.219,23.609)
C5: (55.283,-48.700,24.731)
O3': (54.828,-52.301,19.935)
N3: (56.216,-50.516,25.958)
OP1: (54.773,-46.879,18.462)
OP2: (54.146,-46.267,20.871)
C2: (56.729,-51.075,24.849)
C1': (57.053,-51.017,22.495)
C3': (55.413,-51.428,20.884)
O5': (55.332,-48.431,20.367)
O4': (57.154,-50.054,21.480)
C5': (55.984,-49.351,19.525)
P: (55.075,-46.932,19.910)
C4': (56.472,-50.524,20.307)
C2': (56.172,-52.140,21.981)
O2': (57.011,-53.163,21.443)
N1: (56.485,-50.391,23.673)
O4: (55.146,-49.022,27.101)
O2: (57.354,-52.109,24.924)
C6: (55.772,-49.219,23.609)
C5: (55.283,-48.700,24.731)
O3': (54.828,-52.301,19.935)
Image (generated by PyMOL):