Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIO:X5:X168
Extra
PDB:
ATOM 1 O3' G A 4 19.049 -2.303 18.133 1.00 29.19 O
ATOM 2 P A A 5 19.427 -1.024 19.023 1.00 29.94 P
ATOM 3 OP1 A A 5 18.199 -0.201 19.116 1.00 29.78 O
ATOM 4 OP2 A A 5 20.684 -0.416 18.530 1.00 29.95 O
ATOM 5 O5' A A 5 19.780 -1.645 20.454 1.00 28.10 O
ATOM 6 C5' A A 5 18.809 -2.299 21.241 1.00 25.40 C
ATOM 7 C4' A A 5 19.495 -3.026 22.378 1.00 23.90 C
ATOM 8 O4' A A 5 20.459 -3.983 21.867 1.00 22.56 O
ATOM 9 C3' A A 5 20.340 -2.159 23.297 1.00 23.13 C
ATOM 10 O3' A A 5 19.521 -1.418 24.173 1.00 22.74 O
ATOM 11 C2' A A 5 21.139 -3.250 24.001 1.00 22.82 C
ATOM 12 O2' A A 5 20.380 -4.013 24.919 1.00 23.23 O
ATOM 13 C1' A A 5 21.517 -4.113 22.802 1.00 21.50 C
ATOM 14 N9 A A 5 22.773 -3.707 22.172 1.00 20.52 N
ATOM 15 C8 A A 5 22.914 -3.040 20.987 1.00 20.21 C
ATOM 16 N7 A A 5 24.161 -2.806 20.660 1.00 20.22 N
ATOM 17 C5 A A 5 24.893 -3.355 21.700 1.00 19.40 C
ATOM 18 C6 A A 5 26.280 -3.444 21.946 1.00 18.93 C
ATOM 19 N6 A A 5 27.199 -2.943 21.117 1.00 19.01 N
ATOM 20 N1 A A 5 26.685 -4.055 23.082 1.00 18.51 N
ATOM 21 C2 A A 5 25.755 -4.552 23.908 1.00 18.59 C
ATOM 22 N3 A A 5 24.426 -4.535 23.779 1.00 19.04 N
ATOM 23 C4 A A 5 24.053 -3.914 22.645 1.00 19.55 C
ATOM 24 P C A 6 19.912 0.070 24.606 1.00 22.05 P
ATOM 25 OP1 C A 6 18.746 0.608 25.341 1.00 23.53 O
ATOM 26 OP2 C A 6 20.443 0.809 23.441 1.00 23.28 O
ATOM 27 O5' C A 6 21.111 -0.146 25.635 1.00 21.55 O
TER
ATOM 1 O3' G B 167 36.610 -3.437 25.934 1.00 16.12 O
ATOM 2 P U B 168 36.433 -4.991 25.614 1.00 16.81 P
ATOM 3 OP1 U B 168 37.507 -5.688 26.361 1.00 17.01 O
ATOM 4 OP2 U B 168 36.281 -5.172 24.152 1.00 16.22 O
ATOM 5 O5' U B 168 35.018 -5.350 26.251 1.00 17.20 O
ATOM 6 C5' U B 168 34.803 -5.326 27.651 1.00 16.87 C
ATOM 7 C4' U B 168 33.326 -5.503 27.920 1.00 16.50 C
ATOM 8 O4' U B 168 32.588 -4.385 27.376 1.00 16.08 O
ATOM 9 C3' U B 168 32.664 -6.672 27.217 1.00 16.98 C
ATOM 10 O3' U B 168 32.969 -7.877 27.865 1.00 18.01 O
ATOM 11 C2' U B 168 31.204 -6.288 27.406 1.00 16.92 C
ATOM 12 O2' U B 168 30.751 -6.448 28.737 1.00 16.10 O
ATOM 13 C1' U B 168 31.278 -4.809 27.044 1.00 16.10 C
ATOM 14 N1 U B 168 30.995 -4.521 25.589 1.00 16.16 N
ATOM 15 C2 U B 168 29.683 -4.537 25.144 1.00 15.98 C
ATOM 16 O2 U B 168 28.739 -4.779 25.872 1.00 17.14 O
ATOM 17 N3 U B 168 29.510 -4.261 23.806 1.00 15.22 N
ATOM 18 C4 U B 168 30.507 -3.977 22.888 1.00 15.19 C
ATOM 19 O4 U B 168 30.209 -3.748 21.722 1.00 16.04 O
ATOM 20 C5 U B 168 31.847 -3.987 23.415 1.00 15.11 C
ATOM 21 C6 U B 168 32.037 -4.248 24.715 1.00 15.59 C
ATOM 22 P C B 169 33.240 -9.204 27.030 1.00 18.52 P
ATOM 23 OP1 C B 169 34.070 -10.070 27.899 1.00 19.33 O
ATOM 24 OP2 C B 169 33.728 -8.882 25.666 1.00 19.12 O
ATOM 25 O5' C B 169 31.760 -9.795 26.932 1.00 18.76 O
TER
ATOM 2 P A A 5 19.427 -1.024 19.023 1.00 29.94 P
ATOM 3 OP1 A A 5 18.199 -0.201 19.116 1.00 29.78 O
ATOM 4 OP2 A A 5 20.684 -0.416 18.530 1.00 29.95 O
ATOM 5 O5' A A 5 19.780 -1.645 20.454 1.00 28.10 O
ATOM 6 C5' A A 5 18.809 -2.299 21.241 1.00 25.40 C
ATOM 7 C4' A A 5 19.495 -3.026 22.378 1.00 23.90 C
ATOM 8 O4' A A 5 20.459 -3.983 21.867 1.00 22.56 O
ATOM 9 C3' A A 5 20.340 -2.159 23.297 1.00 23.13 C
ATOM 10 O3' A A 5 19.521 -1.418 24.173 1.00 22.74 O
ATOM 11 C2' A A 5 21.139 -3.250 24.001 1.00 22.82 C
ATOM 12 O2' A A 5 20.380 -4.013 24.919 1.00 23.23 O
ATOM 13 C1' A A 5 21.517 -4.113 22.802 1.00 21.50 C
ATOM 14 N9 A A 5 22.773 -3.707 22.172 1.00 20.52 N
ATOM 15 C8 A A 5 22.914 -3.040 20.987 1.00 20.21 C
ATOM 16 N7 A A 5 24.161 -2.806 20.660 1.00 20.22 N
ATOM 17 C5 A A 5 24.893 -3.355 21.700 1.00 19.40 C
ATOM 18 C6 A A 5 26.280 -3.444 21.946 1.00 18.93 C
ATOM 19 N6 A A 5 27.199 -2.943 21.117 1.00 19.01 N
ATOM 20 N1 A A 5 26.685 -4.055 23.082 1.00 18.51 N
ATOM 21 C2 A A 5 25.755 -4.552 23.908 1.00 18.59 C
ATOM 22 N3 A A 5 24.426 -4.535 23.779 1.00 19.04 N
ATOM 23 C4 A A 5 24.053 -3.914 22.645 1.00 19.55 C
ATOM 24 P C A 6 19.912 0.070 24.606 1.00 22.05 P
ATOM 25 OP1 C A 6 18.746 0.608 25.341 1.00 23.53 O
ATOM 26 OP2 C A 6 20.443 0.809 23.441 1.00 23.28 O
ATOM 27 O5' C A 6 21.111 -0.146 25.635 1.00 21.55 O
TER
ATOM 1 O3' G B 167 36.610 -3.437 25.934 1.00 16.12 O
ATOM 2 P U B 168 36.433 -4.991 25.614 1.00 16.81 P
ATOM 3 OP1 U B 168 37.507 -5.688 26.361 1.00 17.01 O
ATOM 4 OP2 U B 168 36.281 -5.172 24.152 1.00 16.22 O
ATOM 5 O5' U B 168 35.018 -5.350 26.251 1.00 17.20 O
ATOM 6 C5' U B 168 34.803 -5.326 27.651 1.00 16.87 C
ATOM 7 C4' U B 168 33.326 -5.503 27.920 1.00 16.50 C
ATOM 8 O4' U B 168 32.588 -4.385 27.376 1.00 16.08 O
ATOM 9 C3' U B 168 32.664 -6.672 27.217 1.00 16.98 C
ATOM 10 O3' U B 168 32.969 -7.877 27.865 1.00 18.01 O
ATOM 11 C2' U B 168 31.204 -6.288 27.406 1.00 16.92 C
ATOM 12 O2' U B 168 30.751 -6.448 28.737 1.00 16.10 O
ATOM 13 C1' U B 168 31.278 -4.809 27.044 1.00 16.10 C
ATOM 14 N1 U B 168 30.995 -4.521 25.589 1.00 16.16 N
ATOM 15 C2 U B 168 29.683 -4.537 25.144 1.00 15.98 C
ATOM 16 O2 U B 168 28.739 -4.779 25.872 1.00 17.14 O
ATOM 17 N3 U B 168 29.510 -4.261 23.806 1.00 15.22 N
ATOM 18 C4 U B 168 30.507 -3.977 22.888 1.00 15.19 C
ATOM 19 O4 U B 168 30.209 -3.748 21.722 1.00 16.04 O
ATOM 20 C5 U B 168 31.847 -3.987 23.415 1.00 15.11 C
ATOM 21 C6 U B 168 32.037 -4.248 24.715 1.00 15.59 C
ATOM 22 P C B 169 33.240 -9.204 27.030 1.00 18.52 P
ATOM 23 OP1 C B 169 34.070 -10.070 27.899 1.00 19.33 O
ATOM 24 OP2 C B 169 33.728 -8.882 25.666 1.00 19.12 O
ATOM 25 O5' C B 169 31.760 -9.795 26.932 1.00 18.76 O
TER
Atoms:
OP1: (18.199,-0.201,19.116)
OP2: (20.684,-0.416,18.530)
C3': (20.340,-2.159,23.297)
C1': (21.517,-4.113,22.802)
C5': (18.809,-2.299,21.241)
O4': (20.459,-3.983,21.867)
C8: (22.914,-3.040,20.987)
O2': (20.380,-4.013,24.919)
C6: (26.280,-3.444,21.946)
C5: (24.893,-3.355,21.700)
C4: (24.053,-3.914,22.645)
P: (19.427,-1.024,19.023)
C4': (19.495,-3.026,22.378)
C2': (21.139,-3.250,24.001)
C2: (25.755,-4.552,23.908)
N1: (26.685,-4.055,23.082)
N3: (24.426,-4.535,23.779)
N6: (27.199,-2.943,21.117)
N7: (24.161,-2.806,20.660)
N9: (22.773,-3.707,22.172)
O5': (19.780,-1.645,20.454)
O3': (19.521,-1.418,24.173)
OP2: (20.684,-0.416,18.530)
C3': (20.340,-2.159,23.297)
C1': (21.517,-4.113,22.802)
C5': (18.809,-2.299,21.241)
O4': (20.459,-3.983,21.867)
C8: (22.914,-3.040,20.987)
O2': (20.380,-4.013,24.919)
C6: (26.280,-3.444,21.946)
C5: (24.893,-3.355,21.700)
C4: (24.053,-3.914,22.645)
P: (19.427,-1.024,19.023)
C4': (19.495,-3.026,22.378)
C2': (21.139,-3.250,24.001)
C2: (25.755,-4.552,23.908)
N1: (26.685,-4.055,23.082)
N3: (24.426,-4.535,23.779)
N6: (27.199,-2.943,21.117)
N7: (24.161,-2.806,20.660)
N9: (22.773,-3.707,22.172)
O5': (19.780,-1.645,20.454)
O3': (19.521,-1.418,24.173)
C4: (30.507,-3.977,22.888)
N3: (29.510,-4.261,23.806)
OP1: (37.507,-5.688,26.361)
OP2: (36.281,-5.172,24.152)
C2: (29.683,-4.537,25.144)
C1': (31.278,-4.809,27.044)
C3': (32.664,-6.672,27.217)
O5': (35.018,-5.350,26.251)
O4': (32.588,-4.385,27.376)
C5': (34.803,-5.326,27.651)
P: (36.433,-4.991,25.614)
C4': (33.326,-5.503,27.920)
C2': (31.204,-6.288,27.406)
O2': (30.751,-6.448,28.737)
N1: (30.995,-4.521,25.589)
O4: (30.209,-3.748,21.722)
O2: (28.739,-4.779,25.872)
C6: (32.037,-4.248,24.715)
C5: (31.847,-3.987,23.415)
O3': (32.969,-7.877,27.865)
N3: (29.510,-4.261,23.806)
OP1: (37.507,-5.688,26.361)
OP2: (36.281,-5.172,24.152)
C2: (29.683,-4.537,25.144)
C1': (31.278,-4.809,27.044)
C3': (32.664,-6.672,27.217)
O5': (35.018,-5.350,26.251)
O4': (32.588,-4.385,27.376)
C5': (34.803,-5.326,27.651)
P: (36.433,-4.991,25.614)
C4': (33.326,-5.503,27.920)
C2': (31.204,-6.288,27.406)
O2': (30.751,-6.448,28.737)
N1: (30.995,-4.521,25.589)
O4: (30.209,-3.748,21.722)
O2: (28.739,-4.779,25.872)
C6: (32.037,-4.248,24.715)
C5: (31.847,-3.987,23.415)
O3': (32.969,-7.877,27.865)
Image (generated by PyMOL):