Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YYW:E8:F3
Extra
PDB:
ATOM 1 O3' U A 7 -36.136 -7.869 23.216 1.00 37.49 O
ATOM 2 P A A 8 -35.957 -6.412 22.564 1.00 49.44 P
ATOM 3 OP1 A A 8 -34.560 -6.277 22.081 1.00 50.04 O
ATOM 4 OP2 A A 8 -36.494 -5.424 23.536 1.00 45.31 O
ATOM 5 O5' A A 8 -36.918 -6.452 21.297 1.00 39.16 O
ATOM 6 C5' A A 8 -36.647 -7.329 20.213 1.00 34.30 C
ATOM 7 C4' A A 8 -37.654 -7.120 19.111 1.00 39.87 C
ATOM 8 O4' A A 8 -38.945 -7.654 19.517 1.00 49.78 O
ATOM 9 C3' A A 8 -37.945 -5.669 18.783 1.00 37.30 C
ATOM 10 O3' A A 8 -36.967 -5.106 17.922 1.00 35.48 O
ATOM 11 C2' A A 8 -39.315 -5.775 18.133 1.00 41.24 C
ATOM 12 O2' A A 8 -39.236 -6.282 16.818 1.00 51.30 O
ATOM 13 C1' A A 8 -39.982 -6.809 19.042 1.00 45.11 C
ATOM 14 N9 A A 8 -40.635 -6.198 20.202 1.00 45.39 N
ATOM 15 C8 A A 8 -40.076 -5.885 21.419 1.00 37.31 C
ATOM 16 N7 A A 8 -40.918 -5.336 22.261 1.00 34.22 N
ATOM 17 C5 A A 8 -42.113 -5.289 21.556 1.00 33.66 C
ATOM 18 C6 A A 8 -43.398 -4.827 21.897 1.00 29.53 C
ATOM 19 N6 A A 8 -43.712 -4.319 23.090 1.00 31.32 N
ATOM 20 N1 A A 8 -44.365 -4.913 20.959 1.00 32.87 N
ATOM 21 C2 A A 8 -44.058 -5.439 19.768 1.00 41.02 C
ATOM 22 N3 A A 8 -42.893 -5.919 19.333 1.00 41.12 N
ATOM 23 C4 A A 8 -41.951 -5.813 20.285 1.00 39.34 C
ATOM 24 P U A 9 -36.675 -3.529 17.991 1.00 46.89 P
ATOM 25 OP1 U A 9 -35.389 -3.247 17.307 1.00 41.48 O
ATOM 26 OP2 U A 9 -36.855 -3.115 19.408 1.00 39.53 O
ATOM 27 O5' U A 9 -37.858 -2.900 17.131 1.00 27.97 O
TER
ATOM 1 O3' A B 2 -53.305 -0.400 21.245 1.00 40.67 O
ATOM 2 P U B 3 -53.689 -1.945 21.451 1.00 53.39 P
ATOM 3 OP1 U B 3 -55.127 -2.106 21.124 1.00 56.96 O
ATOM 4 OP2 U B 3 -53.193 -2.355 22.788 1.00 56.59 O
ATOM 5 O5' U B 3 -52.829 -2.706 20.346 1.00 55.02 O
ATOM 6 C5' U B 3 -53.087 -2.504 18.960 1.00 50.94 C
ATOM 7 C4' U B 3 -51.973 -3.087 18.123 1.00 47.30 C
ATOM 8 O4' U B 3 -50.734 -2.372 18.382 1.00 49.83 O
ATOM 9 C3' U B 3 -51.606 -4.530 18.412 1.00 46.14 C
ATOM 10 O3' U B 3 -52.502 -5.437 17.791 1.00 49.27 O
ATOM 11 C2' U B 3 -50.211 -4.611 17.812 1.00 45.42 C
ATOM 12 O2' U B 3 -50.232 -4.686 16.402 1.00 38.47 O
ATOM 13 C1' U B 3 -49.633 -3.259 18.232 1.00 47.84 C
ATOM 14 N1 U B 3 -48.927 -3.343 19.517 1.00 47.90 N
ATOM 15 C2 U B 3 -47.607 -3.765 19.505 1.00 45.28 C
ATOM 16 O2 U B 3 -47.013 -4.064 18.485 1.00 45.59 O
ATOM 17 N3 U B 3 -47.009 -3.824 20.739 1.00 44.77 N
ATOM 18 C4 U B 3 -47.582 -3.514 21.954 1.00 42.60 C
ATOM 19 O4 U B 3 -46.898 -3.574 22.976 1.00 48.27 O
ATOM 20 C5 U B 3 -48.946 -3.093 21.881 1.00 44.51 C
ATOM 21 C6 U B 3 -49.556 -3.022 20.695 1.00 44.55 C
ATOM 22 P A B 4 -52.618 -6.940 18.348 1.00 57.73 P
ATOM 23 OP1 A B 4 -53.631 -7.651 17.530 1.00 62.51 O
ATOM 24 OP2 A B 4 -52.779 -6.874 19.823 1.00 45.66 O
ATOM 25 O5' A B 4 -51.191 -7.575 18.039 1.00 52.04 O
TER
ATOM 2 P A A 8 -35.957 -6.412 22.564 1.00 49.44 P
ATOM 3 OP1 A A 8 -34.560 -6.277 22.081 1.00 50.04 O
ATOM 4 OP2 A A 8 -36.494 -5.424 23.536 1.00 45.31 O
ATOM 5 O5' A A 8 -36.918 -6.452 21.297 1.00 39.16 O
ATOM 6 C5' A A 8 -36.647 -7.329 20.213 1.00 34.30 C
ATOM 7 C4' A A 8 -37.654 -7.120 19.111 1.00 39.87 C
ATOM 8 O4' A A 8 -38.945 -7.654 19.517 1.00 49.78 O
ATOM 9 C3' A A 8 -37.945 -5.669 18.783 1.00 37.30 C
ATOM 10 O3' A A 8 -36.967 -5.106 17.922 1.00 35.48 O
ATOM 11 C2' A A 8 -39.315 -5.775 18.133 1.00 41.24 C
ATOM 12 O2' A A 8 -39.236 -6.282 16.818 1.00 51.30 O
ATOM 13 C1' A A 8 -39.982 -6.809 19.042 1.00 45.11 C
ATOM 14 N9 A A 8 -40.635 -6.198 20.202 1.00 45.39 N
ATOM 15 C8 A A 8 -40.076 -5.885 21.419 1.00 37.31 C
ATOM 16 N7 A A 8 -40.918 -5.336 22.261 1.00 34.22 N
ATOM 17 C5 A A 8 -42.113 -5.289 21.556 1.00 33.66 C
ATOM 18 C6 A A 8 -43.398 -4.827 21.897 1.00 29.53 C
ATOM 19 N6 A A 8 -43.712 -4.319 23.090 1.00 31.32 N
ATOM 20 N1 A A 8 -44.365 -4.913 20.959 1.00 32.87 N
ATOM 21 C2 A A 8 -44.058 -5.439 19.768 1.00 41.02 C
ATOM 22 N3 A A 8 -42.893 -5.919 19.333 1.00 41.12 N
ATOM 23 C4 A A 8 -41.951 -5.813 20.285 1.00 39.34 C
ATOM 24 P U A 9 -36.675 -3.529 17.991 1.00 46.89 P
ATOM 25 OP1 U A 9 -35.389 -3.247 17.307 1.00 41.48 O
ATOM 26 OP2 U A 9 -36.855 -3.115 19.408 1.00 39.53 O
ATOM 27 O5' U A 9 -37.858 -2.900 17.131 1.00 27.97 O
TER
ATOM 1 O3' A B 2 -53.305 -0.400 21.245 1.00 40.67 O
ATOM 2 P U B 3 -53.689 -1.945 21.451 1.00 53.39 P
ATOM 3 OP1 U B 3 -55.127 -2.106 21.124 1.00 56.96 O
ATOM 4 OP2 U B 3 -53.193 -2.355 22.788 1.00 56.59 O
ATOM 5 O5' U B 3 -52.829 -2.706 20.346 1.00 55.02 O
ATOM 6 C5' U B 3 -53.087 -2.504 18.960 1.00 50.94 C
ATOM 7 C4' U B 3 -51.973 -3.087 18.123 1.00 47.30 C
ATOM 8 O4' U B 3 -50.734 -2.372 18.382 1.00 49.83 O
ATOM 9 C3' U B 3 -51.606 -4.530 18.412 1.00 46.14 C
ATOM 10 O3' U B 3 -52.502 -5.437 17.791 1.00 49.27 O
ATOM 11 C2' U B 3 -50.211 -4.611 17.812 1.00 45.42 C
ATOM 12 O2' U B 3 -50.232 -4.686 16.402 1.00 38.47 O
ATOM 13 C1' U B 3 -49.633 -3.259 18.232 1.00 47.84 C
ATOM 14 N1 U B 3 -48.927 -3.343 19.517 1.00 47.90 N
ATOM 15 C2 U B 3 -47.607 -3.765 19.505 1.00 45.28 C
ATOM 16 O2 U B 3 -47.013 -4.064 18.485 1.00 45.59 O
ATOM 17 N3 U B 3 -47.009 -3.824 20.739 1.00 44.77 N
ATOM 18 C4 U B 3 -47.582 -3.514 21.954 1.00 42.60 C
ATOM 19 O4 U B 3 -46.898 -3.574 22.976 1.00 48.27 O
ATOM 20 C5 U B 3 -48.946 -3.093 21.881 1.00 44.51 C
ATOM 21 C6 U B 3 -49.556 -3.022 20.695 1.00 44.55 C
ATOM 22 P A B 4 -52.618 -6.940 18.348 1.00 57.73 P
ATOM 23 OP1 A B 4 -53.631 -7.651 17.530 1.00 62.51 O
ATOM 24 OP2 A B 4 -52.779 -6.874 19.823 1.00 45.66 O
ATOM 25 O5' A B 4 -51.191 -7.575 18.039 1.00 52.04 O
TER
Atoms:
OP1: (-34.560,-6.277,22.081)
OP2: (-36.494,-5.424,23.536)
C3': (-37.945,-5.669,18.783)
C1': (-39.982,-6.809,19.042)
C5': (-36.647,-7.329,20.213)
O4': (-38.945,-7.654,19.517)
C8: (-40.076,-5.885,21.419)
O2': (-39.236,-6.282,16.818)
C6: (-43.398,-4.827,21.897)
C5: (-42.113,-5.289,21.556)
C4: (-41.951,-5.813,20.285)
P: (-35.957,-6.412,22.564)
C4': (-37.654,-7.120,19.111)
C2': (-39.315,-5.775,18.133)
C2: (-44.058,-5.439,19.768)
N1: (-44.365,-4.913,20.959)
N3: (-42.893,-5.919,19.333)
N6: (-43.712,-4.319,23.090)
N7: (-40.918,-5.336,22.261)
N9: (-40.635,-6.198,20.202)
O5': (-36.918,-6.452,21.297)
O3': (-36.967,-5.106,17.922)
OP2: (-36.494,-5.424,23.536)
C3': (-37.945,-5.669,18.783)
C1': (-39.982,-6.809,19.042)
C5': (-36.647,-7.329,20.213)
O4': (-38.945,-7.654,19.517)
C8: (-40.076,-5.885,21.419)
O2': (-39.236,-6.282,16.818)
C6: (-43.398,-4.827,21.897)
C5: (-42.113,-5.289,21.556)
C4: (-41.951,-5.813,20.285)
P: (-35.957,-6.412,22.564)
C4': (-37.654,-7.120,19.111)
C2': (-39.315,-5.775,18.133)
C2: (-44.058,-5.439,19.768)
N1: (-44.365,-4.913,20.959)
N3: (-42.893,-5.919,19.333)
N6: (-43.712,-4.319,23.090)
N7: (-40.918,-5.336,22.261)
N9: (-40.635,-6.198,20.202)
O5': (-36.918,-6.452,21.297)
O3': (-36.967,-5.106,17.922)
C4: (-47.582,-3.514,21.954)
N3: (-47.009,-3.824,20.739)
OP1: (-55.127,-2.106,21.124)
OP2: (-53.193,-2.355,22.788)
C2: (-47.607,-3.765,19.505)
C1': (-49.633,-3.259,18.232)
C3': (-51.606,-4.530,18.412)
O5': (-52.829,-2.706,20.346)
O4': (-50.734,-2.372,18.382)
C5': (-53.087,-2.504,18.960)
P: (-53.689,-1.945,21.451)
C4': (-51.973,-3.087,18.123)
C2': (-50.211,-4.611,17.812)
O2': (-50.232,-4.686,16.402)
N1: (-48.927,-3.343,19.517)
O4: (-46.898,-3.574,22.976)
O2: (-47.013,-4.064,18.485)
C6: (-49.556,-3.022,20.695)
C5: (-48.946,-3.093,21.881)
O3': (-52.502,-5.437,17.791)
N3: (-47.009,-3.824,20.739)
OP1: (-55.127,-2.106,21.124)
OP2: (-53.193,-2.355,22.788)
C2: (-47.607,-3.765,19.505)
C1': (-49.633,-3.259,18.232)
C3': (-51.606,-4.530,18.412)
O5': (-52.829,-2.706,20.346)
O4': (-50.734,-2.372,18.382)
C5': (-53.087,-2.504,18.960)
P: (-53.689,-1.945,21.451)
C4': (-51.973,-3.087,18.123)
C2': (-50.211,-4.611,17.812)
O2': (-50.232,-4.686,16.402)
N1: (-48.927,-3.343,19.517)
O4: (-46.898,-3.574,22.976)
O2: (-47.013,-4.064,18.485)
C6: (-49.556,-3.022,20.695)
C5: (-48.946,-3.093,21.881)
O3': (-52.502,-5.437,17.791)
Image (generated by PyMOL):