Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12556:12223
Extra
PDB:
ATOM 1 O3' A A2555 20.951 -28.411 80.992 1.00 48.20 O
ATOM 2 P A A2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 3 OP1 A A2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 4 OP2 A A2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 5 O5' A A2556 18.675 -27.374 80.578 1.00 32.96 O
ATOM 6 C5' A A2556 18.992 -26.098 80.102 1.00 32.77 C
ATOM 7 C4' A A2556 17.958 -25.130 80.584 1.00 32.81 C
ATOM 8 O4' A A2556 18.030 -24.913 82.018 1.00 32.89 O
ATOM 9 C3' A A2556 18.000 -23.768 79.986 1.00 32.64 C
ATOM 10 O3' A A2556 17.466 -23.833 78.685 1.00 32.62 O
ATOM 11 C2' A A2556 17.151 -22.977 80.980 1.00 32.74 C
ATOM 12 O2' A A2556 15.820 -23.191 80.700 1.00 32.87 O
ATOM 13 C1' A A2556 17.444 -23.676 82.317 1.00 32.87 C
ATOM 14 N9 A A2556 18.363 -22.884 83.159 1.00 32.79 N
ATOM 15 C8 A A2556 19.732 -22.944 83.231 1.00 32.68 C
ATOM 16 N7 A A2556 20.300 -22.023 83.995 1.00 32.64 N
ATOM 17 C5 A A2556 19.231 -21.297 84.475 1.00 32.73 C
ATOM 18 C6 A A2556 19.151 -20.183 85.329 1.00 32.75 C
ATOM 19 N6 A A2556 20.205 -19.620 85.884 1.00 32.69 N
ATOM 20 N1 A A2556 17.923 -19.670 85.605 1.00 32.87 N
ATOM 21 C2 A A2556 16.868 -20.242 85.009 1.00 32.94 C
ATOM 22 N3 A A2556 16.834 -21.285 84.182 1.00 32.92 N
ATOM 23 C4 A A2556 18.038 -21.801 83.957 1.00 32.82 C
ATOM 24 P G A2557 17.498 -22.627 77.648 1.00 34.02 P
ATOM 25 OP1 G A2557 16.733 -23.085 76.494 1.00 34.08 O
ATOM 26 OP2 G A2557 18.913 -22.209 77.429 1.00 33.84 O
ATOM 27 O5' G A2557 16.717 -21.495 78.412 1.00 34.06 O
TER
ATOM 1 O3' C B2222 16.610 -11.004 91.115 1.00 35.86 O
ATOM 2 P U B2223 16.181 -12.384 91.832 1.00 38.93 P
ATOM 3 OP1 U B2223 15.309 -12.023 92.896 1.00 39.17 O
ATOM 4 OP2 U B2223 17.425 -13.120 92.143 1.00 38.86 O
ATOM 5 O5' U B2223 15.358 -13.181 90.732 1.00 38.86 O
ATOM 6 C5' U B2223 14.202 -12.644 90.146 1.00 38.90 C
ATOM 7 C4' U B2223 13.702 -13.538 89.065 1.00 38.82 C
ATOM 8 O4' U B2223 14.745 -13.776 88.113 1.00 38.59 O
ATOM 9 C3' U B2223 13.316 -14.922 89.486 1.00 38.94 C
ATOM 10 O3' U B2223 12.047 -14.962 90.048 1.00 39.17 O
ATOM 11 C2' U B2223 13.387 -15.689 88.191 1.00 38.79 C
ATOM 12 O2' U B2223 12.254 -15.371 87.407 1.00 38.83 O
ATOM 13 C1' U B2223 14.583 -15.049 87.534 1.00 38.57 C
ATOM 14 N1 U B2223 15.843 -15.823 87.698 1.00 38.47 N
ATOM 15 C2 U B2223 16.061 -17.043 87.030 1.00 38.41 C
ATOM 16 O2 U B2223 15.217 -17.636 86.352 1.00 38.44 O
ATOM 17 N3 U B2223 17.298 -17.621 87.220 1.00 38.33 N
ATOM 18 C4 U B2223 18.304 -17.083 87.958 1.00 38.30 C
ATOM 19 O4 U B2223 19.374 -17.664 88.007 1.00 38.24 O
ATOM 20 C5 U B2223 18.026 -15.846 88.586 1.00 38.37 C
ATOM 21 C6 U B2223 16.849 -15.265 88.422 1.00 38.44 C
ATOM 22 P U B2224 11.716 -16.070 91.102 1.00 36.85 P
ATOM 23 OP1 U B2224 10.384 -15.787 91.625 1.00 37.08 O
ATOM 24 OP2 U B2224 12.831 -16.092 92.047 1.00 36.85 O
ATOM 25 O5' U B2224 11.652 -17.407 90.216 1.00 36.78 O
TER
ATOM 2 P A A2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 3 OP1 A A2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 4 OP2 A A2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 5 O5' A A2556 18.675 -27.374 80.578 1.00 32.96 O
ATOM 6 C5' A A2556 18.992 -26.098 80.102 1.00 32.77 C
ATOM 7 C4' A A2556 17.958 -25.130 80.584 1.00 32.81 C
ATOM 8 O4' A A2556 18.030 -24.913 82.018 1.00 32.89 O
ATOM 9 C3' A A2556 18.000 -23.768 79.986 1.00 32.64 C
ATOM 10 O3' A A2556 17.466 -23.833 78.685 1.00 32.62 O
ATOM 11 C2' A A2556 17.151 -22.977 80.980 1.00 32.74 C
ATOM 12 O2' A A2556 15.820 -23.191 80.700 1.00 32.87 O
ATOM 13 C1' A A2556 17.444 -23.676 82.317 1.00 32.87 C
ATOM 14 N9 A A2556 18.363 -22.884 83.159 1.00 32.79 N
ATOM 15 C8 A A2556 19.732 -22.944 83.231 1.00 32.68 C
ATOM 16 N7 A A2556 20.300 -22.023 83.995 1.00 32.64 N
ATOM 17 C5 A A2556 19.231 -21.297 84.475 1.00 32.73 C
ATOM 18 C6 A A2556 19.151 -20.183 85.329 1.00 32.75 C
ATOM 19 N6 A A2556 20.205 -19.620 85.884 1.00 32.69 N
ATOM 20 N1 A A2556 17.923 -19.670 85.605 1.00 32.87 N
ATOM 21 C2 A A2556 16.868 -20.242 85.009 1.00 32.94 C
ATOM 22 N3 A A2556 16.834 -21.285 84.182 1.00 32.92 N
ATOM 23 C4 A A2556 18.038 -21.801 83.957 1.00 32.82 C
ATOM 24 P G A2557 17.498 -22.627 77.648 1.00 34.02 P
ATOM 25 OP1 G A2557 16.733 -23.085 76.494 1.00 34.08 O
ATOM 26 OP2 G A2557 18.913 -22.209 77.429 1.00 33.84 O
ATOM 27 O5' G A2557 16.717 -21.495 78.412 1.00 34.06 O
TER
ATOM 1 O3' C B2222 16.610 -11.004 91.115 1.00 35.86 O
ATOM 2 P U B2223 16.181 -12.384 91.832 1.00 38.93 P
ATOM 3 OP1 U B2223 15.309 -12.023 92.896 1.00 39.17 O
ATOM 4 OP2 U B2223 17.425 -13.120 92.143 1.00 38.86 O
ATOM 5 O5' U B2223 15.358 -13.181 90.732 1.00 38.86 O
ATOM 6 C5' U B2223 14.202 -12.644 90.146 1.00 38.90 C
ATOM 7 C4' U B2223 13.702 -13.538 89.065 1.00 38.82 C
ATOM 8 O4' U B2223 14.745 -13.776 88.113 1.00 38.59 O
ATOM 9 C3' U B2223 13.316 -14.922 89.486 1.00 38.94 C
ATOM 10 O3' U B2223 12.047 -14.962 90.048 1.00 39.17 O
ATOM 11 C2' U B2223 13.387 -15.689 88.191 1.00 38.79 C
ATOM 12 O2' U B2223 12.254 -15.371 87.407 1.00 38.83 O
ATOM 13 C1' U B2223 14.583 -15.049 87.534 1.00 38.57 C
ATOM 14 N1 U B2223 15.843 -15.823 87.698 1.00 38.47 N
ATOM 15 C2 U B2223 16.061 -17.043 87.030 1.00 38.41 C
ATOM 16 O2 U B2223 15.217 -17.636 86.352 1.00 38.44 O
ATOM 17 N3 U B2223 17.298 -17.621 87.220 1.00 38.33 N
ATOM 18 C4 U B2223 18.304 -17.083 87.958 1.00 38.30 C
ATOM 19 O4 U B2223 19.374 -17.664 88.007 1.00 38.24 O
ATOM 20 C5 U B2223 18.026 -15.846 88.586 1.00 38.37 C
ATOM 21 C6 U B2223 16.849 -15.265 88.422 1.00 38.44 C
ATOM 22 P U B2224 11.716 -16.070 91.102 1.00 36.85 P
ATOM 23 OP1 U B2224 10.384 -15.787 91.625 1.00 37.08 O
ATOM 24 OP2 U B2224 12.831 -16.092 92.047 1.00 36.85 O
ATOM 25 O5' U B2224 11.652 -17.407 90.216 1.00 36.78 O
TER
Atoms:
OP1: (18.887,-29.831,80.918)
OP2: (19.797,-28.723,78.820)
C3': (18.000,-23.768,79.986)
C1': (17.444,-23.676,82.317)
C5': (18.992,-26.098,80.102)
O4': (18.030,-24.913,82.018)
C8: (19.732,-22.944,83.231)
O2': (15.820,-23.191,80.700)
C6: (19.151,-20.183,85.329)
C5: (19.231,-21.297,84.475)
C4: (18.038,-21.801,83.957)
P: (19.533,-28.661,80.252)
C4': (17.958,-25.130,80.584)
C2': (17.151,-22.977,80.980)
C2: (16.868,-20.242,85.009)
N1: (17.923,-19.670,85.605)
N3: (16.834,-21.285,84.182)
N6: (20.205,-19.620,85.884)
N7: (20.300,-22.023,83.995)
N9: (18.363,-22.884,83.159)
O5': (18.675,-27.374,80.578)
O3': (17.466,-23.833,78.685)
OP2: (19.797,-28.723,78.820)
C3': (18.000,-23.768,79.986)
C1': (17.444,-23.676,82.317)
C5': (18.992,-26.098,80.102)
O4': (18.030,-24.913,82.018)
C8: (19.732,-22.944,83.231)
O2': (15.820,-23.191,80.700)
C6: (19.151,-20.183,85.329)
C5: (19.231,-21.297,84.475)
C4: (18.038,-21.801,83.957)
P: (19.533,-28.661,80.252)
C4': (17.958,-25.130,80.584)
C2': (17.151,-22.977,80.980)
C2: (16.868,-20.242,85.009)
N1: (17.923,-19.670,85.605)
N3: (16.834,-21.285,84.182)
N6: (20.205,-19.620,85.884)
N7: (20.300,-22.023,83.995)
N9: (18.363,-22.884,83.159)
O5': (18.675,-27.374,80.578)
O3': (17.466,-23.833,78.685)
C4: (18.304,-17.083,87.958)
N3: (17.298,-17.621,87.220)
OP1: (15.309,-12.023,92.896)
OP2: (17.425,-13.120,92.143)
C2: (16.061,-17.043,87.030)
C1': (14.583,-15.049,87.534)
C3': (13.316,-14.922,89.486)
O5': (15.358,-13.181,90.732)
O4': (14.745,-13.776,88.113)
C5': (14.202,-12.644,90.146)
P: (16.181,-12.384,91.832)
C4': (13.702,-13.538,89.065)
C2': (13.387,-15.689,88.191)
O2': (12.254,-15.371,87.407)
N1: (15.843,-15.823,87.698)
O4: (19.374,-17.664,88.007)
O2: (15.217,-17.636,86.352)
C6: (16.849,-15.265,88.422)
C5: (18.026,-15.846,88.586)
O3': (12.047,-14.962,90.048)
N3: (17.298,-17.621,87.220)
OP1: (15.309,-12.023,92.896)
OP2: (17.425,-13.120,92.143)
C2: (16.061,-17.043,87.030)
C1': (14.583,-15.049,87.534)
C3': (13.316,-14.922,89.486)
O5': (15.358,-13.181,90.732)
O4': (14.745,-13.776,88.113)
C5': (14.202,-12.644,90.146)
P: (16.181,-12.384,91.832)
C4': (13.702,-13.538,89.065)
C2': (13.387,-15.689,88.191)
O2': (12.254,-15.371,87.407)
N1: (15.843,-15.823,87.698)
O4: (19.374,-17.664,88.007)
O2: (15.217,-17.636,86.352)
C6: (16.849,-15.265,88.422)
C5: (18.026,-15.846,88.586)
O3': (12.047,-14.962,90.048)
Image (generated by PyMOL):