Doublet info:
Details
Nucleotide types:
AU
Description:
SH_tran: SH_tran
Program used:
JS
Has errors:
False
Source
PDB id:
SPEC:B9:A9
Extra
PDB:
ATOM 67 O3' A A 3 15.536 136.007 104.991 1.00 34.33 O
ATOM 68 P A A 4 15.882 136.755 106.361 1.00 32.93 P
ATOM 69 OP1 A A 4 15.886 135.789 107.483 1.00 35.86 O
ATOM 70 OP2 A A 4 14.903 137.833 106.620 1.00 29.41 O
ATOM 71 O5' A A 4 17.337 137.352 106.062 1.00 30.79 O
ATOM 72 C5' A A 4 18.539 136.571 106.254 1.00 32.10 C
ATOM 73 C4' A A 4 19.756 137.343 105.738 1.00 34.01 C
ATOM 74 O4' A A 4 19.600 137.658 104.340 1.00 33.77 O
ATOM 75 C3' A A 4 19.907 138.691 106.436 1.00 34.45 C
ATOM 76 O3' A A 4 20.555 138.562 107.726 1.00 35.26 O
ATOM 77 C2' A A 4 20.816 139.408 105.440 1.00 33.75 C
ATOM 78 O2' A A 4 22.193 139.106 105.645 1.00 37.11 O
ATOM 79 C1' A A 4 20.348 138.871 104.084 1.00 32.40 C
ATOM 80 N9 A A 4 19.538 139.846 103.322 1.00 28.60 N
ATOM 81 C8 A A 4 18.209 139.801 102.966 1.00 26.58 C
ATOM 82 N7 A A 4 17.842 140.758 102.193 1.00 28.49 N
ATOM 83 C5 A A 4 18.952 141.548 102.064 1.00 27.48 C
ATOM 84 C6 A A 4 19.254 142.753 101.373 1.00 28.31 C
ATOM 85 N6 A A 4 18.360 143.404 100.578 1.00 28.66 N
ATOM 86 N1 A A 4 20.441 143.293 101.496 1.00 27.09 N
ATOM 87 C2 A A 4 21.323 142.716 102.304 1.00 28.24 C
ATOM 88 N3 A A 4 21.217 141.563 102.950 1.00 29.39 N
ATOM 89 C4 A A 4 19.991 141.015 102.797 1.00 29.19 C
ATOM 90 H5'1 A A 4 18.434 135.661 105.689 1.00 0.00 H
ATOM 91 H5'2 A A 4 18.647 136.383 107.308 1.00 0.00 H
ATOM 92 H4' A A 4 20.651 136.754 105.848 1.00 0.00 H
ATOM 93 H3' A A 4 18.966 139.205 106.532 1.00 0.00 H
ATOM 94 H1' A A 4 21.200 138.676 103.463 1.00 0.00 H
ATOM 95 H2' A A 4 20.729 140.472 105.517 1.00 0.00 H
ATOM 96 HO'2 A A 4 22.445 139.374 106.532 1.00 0.00 H
ATOM 97 H8 A A 4 17.568 139.018 103.316 1.00 0.00 H
ATOM 98 H61 A A 4 17.442 143.037 100.461 1.00 0.00 H
ATOM 99 H62 A A 4 18.627 144.246 100.118 1.00 0.00 H
ATOM 100 H2 A A 4 22.248 143.243 102.437 1.00 0.00 H
ATOM 101 P G A 5 20.305 139.609 108.915 1.00 35.23 P
ATOM 102 OP1 G A 5 21.132 139.252 110.090 1.00 37.98 O
ATOM 103 OP2 G A 5 18.874 139.639 109.288 1.00 34.75 O
ATOM 104 O5' G A 5 20.732 141.019 108.285 1.00 34.41 O
TER
ATOM 1 O3' A B 1 25.148 149.522 99.617 1.00 51.06 O
ATOM 2 P U B 2 25.960 148.810 98.438 1.00 50.40 P
ATOM 3 OP1 U B 2 26.531 149.826 97.525 1.00 53.99 O
ATOM 4 OP2 U B 2 25.076 147.890 97.689 1.00 52.81 O
ATOM 5 O5' U B 2 27.086 148.008 99.244 1.00 50.99 O
ATOM 6 C5' U B 2 28.327 148.629 99.649 1.00 48.63 C
ATOM 7 C4' U B 2 29.153 147.660 100.500 1.00 48.46 C
ATOM 8 O4' U B 2 28.458 147.353 101.724 1.00 49.07 O
ATOM 9 C3' U B 2 29.364 146.315 99.806 1.00 48.92 C
ATOM 10 O3' U B 2 30.474 146.355 98.876 1.00 48.15 O
ATOM 11 C2' U B 2 29.708 145.431 101.005 1.00 49.47 C
ATOM 12 O2' U B 2 31.093 145.481 101.337 1.00 51.48 O
ATOM 13 C1' U B 2 28.862 146.026 102.142 1.00 50.14 C
ATOM 14 N1 U B 2 27.686 145.175 102.483 1.00 51.12 N
ATOM 15 C2 U B 2 27.892 144.093 103.361 1.00 53.38 C
ATOM 16 O2 U B 2 28.968 143.833 103.900 1.00 55.07 O
ATOM 17 N3 U B 2 26.784 143.285 103.604 1.00 52.99 N
ATOM 18 C4 U B 2 25.500 143.435 103.092 1.00 51.91 C
ATOM 19 O4 U B 2 24.614 142.642 103.396 1.00 52.61 O
ATOM 20 C5 U B 2 25.362 144.598 102.201 1.00 51.45 C
ATOM 21 C6 U B 2 26.423 145.395 101.940 1.00 49.76 C
ATOM 22 H5'1 U B 2 28.085 149.497 100.237 1.00 0.00 H
ATOM 23 H5'2 U B 2 28.875 148.890 98.762 1.00 0.00 H
ATOM 24 H4' U B 2 30.098 148.104 100.763 1.00 0.00 H
ATOM 25 H3' U B 2 28.475 145.940 99.328 1.00 0.00 H
ATOM 26 H1' U B 2 29.456 146.096 103.031 1.00 0.00 H
ATOM 27 H2' U B 2 29.485 144.396 100.814 1.00 0.00 H
ATOM 28 HO'2 U B 2 31.358 146.397 101.451 1.00 0.00 H
ATOM 29 H6 U B 2 26.310 146.241 101.288 1.00 0.00 H
ATOM 30 H3 U B 2 26.927 142.509 104.215 1.00 0.00 H
ATOM 31 H5 U B 2 24.415 144.820 101.751 1.00 0.00 H
ATOM 32 P G B 3 30.285 146.239 97.290 1.00 47.90 P
ATOM 33 OP1 G B 3 31.576 146.456 96.598 1.00 48.82 O
ATOM 34 OP2 G B 3 29.250 147.159 96.770 1.00 48.25 O
ATOM 35 O5' G B 3 29.787 144.726 97.161 1.00 47.23 O
TER
ATOM 68 P A A 4 15.882 136.755 106.361 1.00 32.93 P
ATOM 69 OP1 A A 4 15.886 135.789 107.483 1.00 35.86 O
ATOM 70 OP2 A A 4 14.903 137.833 106.620 1.00 29.41 O
ATOM 71 O5' A A 4 17.337 137.352 106.062 1.00 30.79 O
ATOM 72 C5' A A 4 18.539 136.571 106.254 1.00 32.10 C
ATOM 73 C4' A A 4 19.756 137.343 105.738 1.00 34.01 C
ATOM 74 O4' A A 4 19.600 137.658 104.340 1.00 33.77 O
ATOM 75 C3' A A 4 19.907 138.691 106.436 1.00 34.45 C
ATOM 76 O3' A A 4 20.555 138.562 107.726 1.00 35.26 O
ATOM 77 C2' A A 4 20.816 139.408 105.440 1.00 33.75 C
ATOM 78 O2' A A 4 22.193 139.106 105.645 1.00 37.11 O
ATOM 79 C1' A A 4 20.348 138.871 104.084 1.00 32.40 C
ATOM 80 N9 A A 4 19.538 139.846 103.322 1.00 28.60 N
ATOM 81 C8 A A 4 18.209 139.801 102.966 1.00 26.58 C
ATOM 82 N7 A A 4 17.842 140.758 102.193 1.00 28.49 N
ATOM 83 C5 A A 4 18.952 141.548 102.064 1.00 27.48 C
ATOM 84 C6 A A 4 19.254 142.753 101.373 1.00 28.31 C
ATOM 85 N6 A A 4 18.360 143.404 100.578 1.00 28.66 N
ATOM 86 N1 A A 4 20.441 143.293 101.496 1.00 27.09 N
ATOM 87 C2 A A 4 21.323 142.716 102.304 1.00 28.24 C
ATOM 88 N3 A A 4 21.217 141.563 102.950 1.00 29.39 N
ATOM 89 C4 A A 4 19.991 141.015 102.797 1.00 29.19 C
ATOM 90 H5'1 A A 4 18.434 135.661 105.689 1.00 0.00 H
ATOM 91 H5'2 A A 4 18.647 136.383 107.308 1.00 0.00 H
ATOM 92 H4' A A 4 20.651 136.754 105.848 1.00 0.00 H
ATOM 93 H3' A A 4 18.966 139.205 106.532 1.00 0.00 H
ATOM 94 H1' A A 4 21.200 138.676 103.463 1.00 0.00 H
ATOM 95 H2' A A 4 20.729 140.472 105.517 1.00 0.00 H
ATOM 96 HO'2 A A 4 22.445 139.374 106.532 1.00 0.00 H
ATOM 97 H8 A A 4 17.568 139.018 103.316 1.00 0.00 H
ATOM 98 H61 A A 4 17.442 143.037 100.461 1.00 0.00 H
ATOM 99 H62 A A 4 18.627 144.246 100.118 1.00 0.00 H
ATOM 100 H2 A A 4 22.248 143.243 102.437 1.00 0.00 H
ATOM 101 P G A 5 20.305 139.609 108.915 1.00 35.23 P
ATOM 102 OP1 G A 5 21.132 139.252 110.090 1.00 37.98 O
ATOM 103 OP2 G A 5 18.874 139.639 109.288 1.00 34.75 O
ATOM 104 O5' G A 5 20.732 141.019 108.285 1.00 34.41 O
TER
ATOM 1 O3' A B 1 25.148 149.522 99.617 1.00 51.06 O
ATOM 2 P U B 2 25.960 148.810 98.438 1.00 50.40 P
ATOM 3 OP1 U B 2 26.531 149.826 97.525 1.00 53.99 O
ATOM 4 OP2 U B 2 25.076 147.890 97.689 1.00 52.81 O
ATOM 5 O5' U B 2 27.086 148.008 99.244 1.00 50.99 O
ATOM 6 C5' U B 2 28.327 148.629 99.649 1.00 48.63 C
ATOM 7 C4' U B 2 29.153 147.660 100.500 1.00 48.46 C
ATOM 8 O4' U B 2 28.458 147.353 101.724 1.00 49.07 O
ATOM 9 C3' U B 2 29.364 146.315 99.806 1.00 48.92 C
ATOM 10 O3' U B 2 30.474 146.355 98.876 1.00 48.15 O
ATOM 11 C2' U B 2 29.708 145.431 101.005 1.00 49.47 C
ATOM 12 O2' U B 2 31.093 145.481 101.337 1.00 51.48 O
ATOM 13 C1' U B 2 28.862 146.026 102.142 1.00 50.14 C
ATOM 14 N1 U B 2 27.686 145.175 102.483 1.00 51.12 N
ATOM 15 C2 U B 2 27.892 144.093 103.361 1.00 53.38 C
ATOM 16 O2 U B 2 28.968 143.833 103.900 1.00 55.07 O
ATOM 17 N3 U B 2 26.784 143.285 103.604 1.00 52.99 N
ATOM 18 C4 U B 2 25.500 143.435 103.092 1.00 51.91 C
ATOM 19 O4 U B 2 24.614 142.642 103.396 1.00 52.61 O
ATOM 20 C5 U B 2 25.362 144.598 102.201 1.00 51.45 C
ATOM 21 C6 U B 2 26.423 145.395 101.940 1.00 49.76 C
ATOM 22 H5'1 U B 2 28.085 149.497 100.237 1.00 0.00 H
ATOM 23 H5'2 U B 2 28.875 148.890 98.762 1.00 0.00 H
ATOM 24 H4' U B 2 30.098 148.104 100.763 1.00 0.00 H
ATOM 25 H3' U B 2 28.475 145.940 99.328 1.00 0.00 H
ATOM 26 H1' U B 2 29.456 146.096 103.031 1.00 0.00 H
ATOM 27 H2' U B 2 29.485 144.396 100.814 1.00 0.00 H
ATOM 28 HO'2 U B 2 31.358 146.397 101.451 1.00 0.00 H
ATOM 29 H6 U B 2 26.310 146.241 101.288 1.00 0.00 H
ATOM 30 H3 U B 2 26.927 142.509 104.215 1.00 0.00 H
ATOM 31 H5 U B 2 24.415 144.820 101.751 1.00 0.00 H
ATOM 32 P G B 3 30.285 146.239 97.290 1.00 47.90 P
ATOM 33 OP1 G B 3 31.576 146.456 96.598 1.00 48.82 O
ATOM 34 OP2 G B 3 29.250 147.159 96.770 1.00 48.25 O
ATOM 35 O5' G B 3 29.787 144.726 97.161 1.00 47.23 O
TER
Atoms:
OP1: (15.886,135.789,107.483)
OP2: (14.903,137.833,106.620)
C3': (19.907,138.691,106.436)
C1': (20.348,138.871,104.084)
C5': (18.539,136.571,106.254)
H2': (20.729,140.472,105.517)
H3': (18.966,139.205,106.532)
O4': (19.600,137.658,104.340)
C8: (18.209,139.801,102.966)
O2': (22.193,139.106,105.645)
N7: (17.842,140.758,102.193)
C6: (19.254,142.753,101.373)
C5: (18.952,141.548,102.064)
C4: (19.991,141.015,102.797)
HO'2: (22.445,139.374,106.532)
N9: (19.538,139.846,103.322)
C4': (19.756,137.343,105.738)
C2': (20.816,139.408,105.440)
H5'2: (18.647,136.383,107.308)
C2: (21.323,142.716,102.304)
N1: (20.441,143.293,101.496)
N3: (21.217,141.563,102.950)
N6: (18.360,143.404,100.578)
H1': (21.200,138.676,103.463)
H4': (20.651,136.754,105.848)
H8: (17.568,139.018,103.316)
P: (15.882,136.755,106.361)
H2: (22.248,143.243,102.437)
O5': (17.337,137.352,106.062)
H61: (17.442,143.037,100.461)
H62: (18.627,144.246,100.118)
O3': (20.555,138.562,107.726)
H5'1: (18.434,135.661,105.689)
OP2: (14.903,137.833,106.620)
C3': (19.907,138.691,106.436)
C1': (20.348,138.871,104.084)
C5': (18.539,136.571,106.254)
H2': (20.729,140.472,105.517)
H3': (18.966,139.205,106.532)
O4': (19.600,137.658,104.340)
C8: (18.209,139.801,102.966)
O2': (22.193,139.106,105.645)
N7: (17.842,140.758,102.193)
C6: (19.254,142.753,101.373)
C5: (18.952,141.548,102.064)
C4: (19.991,141.015,102.797)
HO'2: (22.445,139.374,106.532)
N9: (19.538,139.846,103.322)
C4': (19.756,137.343,105.738)
C2': (20.816,139.408,105.440)
H5'2: (18.647,136.383,107.308)
C2: (21.323,142.716,102.304)
N1: (20.441,143.293,101.496)
N3: (21.217,141.563,102.950)
N6: (18.360,143.404,100.578)
H1': (21.200,138.676,103.463)
H4': (20.651,136.754,105.848)
H8: (17.568,139.018,103.316)
P: (15.882,136.755,106.361)
H2: (22.248,143.243,102.437)
O5': (17.337,137.352,106.062)
H61: (17.442,143.037,100.461)
H62: (18.627,144.246,100.118)
O3': (20.555,138.562,107.726)
H5'1: (18.434,135.661,105.689)
OP1: (26.531,149.826,97.525)
OP2: (25.076,147.890,97.689)
O5': (27.086,148.008,99.244)
C3': (29.364,146.315,99.806)
C1': (28.862,146.026,102.142)
C5': (28.327,148.629,99.649)
H2': (29.485,144.396,100.814)
O4: (24.614,142.642,103.396)
O2: (28.968,143.833,103.900)
H3': (28.475,145.940,99.328)
O4': (28.458,147.353,101.724)
C2: (27.892,144.093,103.361)
C6: (26.423,145.395,101.940)
C5: (25.362,144.598,102.201)
C4: (25.500,143.435,103.092)
HO'2: (31.358,146.397,101.451)
P: (25.960,148.810,98.438)
C4': (29.153,147.660,100.500)
H5'1: (28.085,149.497,100.237)
H5'2: (28.875,148.890,98.762)
O2': (31.093,145.481,101.337)
N1: (27.686,145.175,102.483)
N3: (26.784,143.285,103.604)
H1': (29.456,146.096,103.031)
H4': (30.098,148.104,100.763)
H3: (26.927,142.509,104.215)
H6: (26.310,146.241,101.288)
H5: (24.415,144.820,101.751)
O3': (30.474,146.355,98.876)
C2': (29.708,145.431,101.005)
OP2: (25.076,147.890,97.689)
O5': (27.086,148.008,99.244)
C3': (29.364,146.315,99.806)
C1': (28.862,146.026,102.142)
C5': (28.327,148.629,99.649)
H2': (29.485,144.396,100.814)
O4: (24.614,142.642,103.396)
O2: (28.968,143.833,103.900)
H3': (28.475,145.940,99.328)
O4': (28.458,147.353,101.724)
C2: (27.892,144.093,103.361)
C6: (26.423,145.395,101.940)
C5: (25.362,144.598,102.201)
C4: (25.500,143.435,103.092)
HO'2: (31.358,146.397,101.451)
P: (25.960,148.810,98.438)
C4': (29.153,147.660,100.500)
H5'1: (28.085,149.497,100.237)
H5'2: (28.875,148.890,98.762)
O2': (31.093,145.481,101.337)
N1: (27.686,145.175,102.483)
N3: (26.784,143.285,103.604)
H1': (29.456,146.096,103.031)
H4': (30.098,148.104,100.763)
H3: (26.927,142.509,104.215)
H6: (26.310,146.241,101.288)
H5: (24.415,144.820,101.751)
O3': (30.474,146.355,98.876)
C2': (29.708,145.431,101.005)
Image (generated by PyMOL):