Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A86:A6
Extra
PDB:
ATOM 1 O3' G A 85 2.298 -13.527 12.519 1.00 78.72 O
ATOM 2 P A A 86 2.397 -12.280 11.511 1.00 78.61 P
ATOM 3 OP1 A A 86 1.452 -11.190 11.841 1.00 78.77 O
ATOM 4 OP2 A A 86 2.462 -12.794 10.134 1.00 76.15 O
ATOM 5 O5' A A 86 3.818 -11.687 11.916 1.00 77.25 O
ATOM 6 C5' A A 86 3.968 -10.647 12.857 1.00 74.69 C
ATOM 7 C4' A A 86 5.426 -10.236 12.874 1.00 74.44 C
ATOM 8 O4' A A 86 6.326 -11.362 12.732 1.00 73.75 O
ATOM 9 C3' A A 86 5.839 -9.371 11.704 1.00 73.26 C
ATOM 10 O3' A A 86 5.354 -8.055 11.926 1.00 71.23 O
ATOM 11 C2' A A 86 7.352 -9.486 11.777 1.00 72.37 C
ATOM 12 O2' A A 86 7.888 -8.782 12.877 1.00 75.46 O
ATOM 13 C1' A A 86 7.497 -10.960 12.037 1.00 71.21 C
ATOM 14 N9 A A 86 7.626 -11.821 10.872 1.00 70.02 N
ATOM 15 C8 A A 86 6.645 -12.527 10.229 1.00 68.94 C
ATOM 16 N7 A A 86 7.061 -13.254 9.221 1.00 67.31 N
ATOM 17 C5 A A 86 8.396 -13.015 9.215 1.00 66.11 C
ATOM 18 C6 A A 86 9.385 -13.512 8.386 1.00 66.17 C
ATOM 19 N6 A A 86 9.095 -14.354 7.415 1.00 61.17 N
ATOM 20 N1 A A 86 10.657 -13.103 8.630 1.00 68.68 N
ATOM 21 C2 A A 86 10.877 -12.245 9.649 1.00 67.12 C
ATOM 22 N3 A A 86 10.014 -11.708 10.504 1.00 65.44 N
ATOM 23 C4 A A 86 8.783 -12.149 10.224 1.00 67.82 C
ATOM 24 P U A 87 4.786 -7.266 10.682 1.00 69.38 P
ATOM 25 OP1 U A 87 4.244 -5.972 11.166 1.00 69.52 O
ATOM 26 OP2 U A 87 3.996 -8.205 9.850 1.00 71.80 O
ATOM 27 O5' U A 87 6.111 -6.995 9.877 1.00 65.65 O
TER
ATOM 1 O3' A B 5 17.873 -14.313 1.777 1.00 75.01 O
ATOM 2 P U B 6 18.253 -15.291 2.975 1.00 79.48 P
ATOM 3 OP1 U B 6 19.728 -15.364 2.924 1.00 81.10 O
ATOM 4 OP2 U B 6 17.436 -16.529 2.889 1.00 77.50 O
ATOM 5 O5' U B 6 17.830 -14.447 4.262 1.00 77.18 O
ATOM 6 C5' U B 6 18.545 -13.254 4.451 1.00 79.11 C
ATOM 7 C4' U B 6 18.084 -12.443 5.646 1.00 80.87 C
ATOM 8 O4' U B 6 16.824 -11.760 5.390 1.00 80.96 O
ATOM 9 C3' U B 6 17.845 -13.204 6.940 1.00 81.00 C
ATOM 10 O3' U B 6 19.085 -13.508 7.568 1.00 81.95 O
ATOM 11 C2' U B 6 17.050 -12.136 7.674 1.00 80.31 C
ATOM 12 O2' U B 6 17.861 -11.059 8.097 1.00 80.92 O
ATOM 13 C1' U B 6 16.093 -11.662 6.594 1.00 78.90 C
ATOM 14 N1 U B 6 14.861 -12.495 6.516 1.00 77.40 N
ATOM 15 C2 U B 6 13.758 -12.192 7.310 1.00 77.14 C
ATOM 16 O2 U B 6 13.689 -11.255 8.096 1.00 77.90 O
ATOM 17 N3 U B 6 12.706 -13.051 7.152 1.00 74.09 N
ATOM 18 C4 U B 6 12.637 -14.140 6.329 1.00 73.65 C
ATOM 19 O4 U B 6 11.623 -14.790 6.313 1.00 74.83 O
ATOM 20 C5 U B 6 13.789 -14.407 5.544 1.00 74.62 C
ATOM 21 C6 U B 6 14.833 -13.587 5.666 1.00 76.44 C
ATOM 22 P C B 7 19.229 -14.720 8.601 1.00 83.65 P
ATOM 23 OP1 C B 7 20.669 -14.879 8.843 1.00 85.48 O
ATOM 24 OP2 C B 7 18.471 -15.926 8.192 1.00 84.88 O
ATOM 25 O5' C B 7 18.481 -14.176 9.880 1.00 80.08 O
TER
ATOM 2 P A A 86 2.397 -12.280 11.511 1.00 78.61 P
ATOM 3 OP1 A A 86 1.452 -11.190 11.841 1.00 78.77 O
ATOM 4 OP2 A A 86 2.462 -12.794 10.134 1.00 76.15 O
ATOM 5 O5' A A 86 3.818 -11.687 11.916 1.00 77.25 O
ATOM 6 C5' A A 86 3.968 -10.647 12.857 1.00 74.69 C
ATOM 7 C4' A A 86 5.426 -10.236 12.874 1.00 74.44 C
ATOM 8 O4' A A 86 6.326 -11.362 12.732 1.00 73.75 O
ATOM 9 C3' A A 86 5.839 -9.371 11.704 1.00 73.26 C
ATOM 10 O3' A A 86 5.354 -8.055 11.926 1.00 71.23 O
ATOM 11 C2' A A 86 7.352 -9.486 11.777 1.00 72.37 C
ATOM 12 O2' A A 86 7.888 -8.782 12.877 1.00 75.46 O
ATOM 13 C1' A A 86 7.497 -10.960 12.037 1.00 71.21 C
ATOM 14 N9 A A 86 7.626 -11.821 10.872 1.00 70.02 N
ATOM 15 C8 A A 86 6.645 -12.527 10.229 1.00 68.94 C
ATOM 16 N7 A A 86 7.061 -13.254 9.221 1.00 67.31 N
ATOM 17 C5 A A 86 8.396 -13.015 9.215 1.00 66.11 C
ATOM 18 C6 A A 86 9.385 -13.512 8.386 1.00 66.17 C
ATOM 19 N6 A A 86 9.095 -14.354 7.415 1.00 61.17 N
ATOM 20 N1 A A 86 10.657 -13.103 8.630 1.00 68.68 N
ATOM 21 C2 A A 86 10.877 -12.245 9.649 1.00 67.12 C
ATOM 22 N3 A A 86 10.014 -11.708 10.504 1.00 65.44 N
ATOM 23 C4 A A 86 8.783 -12.149 10.224 1.00 67.82 C
ATOM 24 P U A 87 4.786 -7.266 10.682 1.00 69.38 P
ATOM 25 OP1 U A 87 4.244 -5.972 11.166 1.00 69.52 O
ATOM 26 OP2 U A 87 3.996 -8.205 9.850 1.00 71.80 O
ATOM 27 O5' U A 87 6.111 -6.995 9.877 1.00 65.65 O
TER
ATOM 1 O3' A B 5 17.873 -14.313 1.777 1.00 75.01 O
ATOM 2 P U B 6 18.253 -15.291 2.975 1.00 79.48 P
ATOM 3 OP1 U B 6 19.728 -15.364 2.924 1.00 81.10 O
ATOM 4 OP2 U B 6 17.436 -16.529 2.889 1.00 77.50 O
ATOM 5 O5' U B 6 17.830 -14.447 4.262 1.00 77.18 O
ATOM 6 C5' U B 6 18.545 -13.254 4.451 1.00 79.11 C
ATOM 7 C4' U B 6 18.084 -12.443 5.646 1.00 80.87 C
ATOM 8 O4' U B 6 16.824 -11.760 5.390 1.00 80.96 O
ATOM 9 C3' U B 6 17.845 -13.204 6.940 1.00 81.00 C
ATOM 10 O3' U B 6 19.085 -13.508 7.568 1.00 81.95 O
ATOM 11 C2' U B 6 17.050 -12.136 7.674 1.00 80.31 C
ATOM 12 O2' U B 6 17.861 -11.059 8.097 1.00 80.92 O
ATOM 13 C1' U B 6 16.093 -11.662 6.594 1.00 78.90 C
ATOM 14 N1 U B 6 14.861 -12.495 6.516 1.00 77.40 N
ATOM 15 C2 U B 6 13.758 -12.192 7.310 1.00 77.14 C
ATOM 16 O2 U B 6 13.689 -11.255 8.096 1.00 77.90 O
ATOM 17 N3 U B 6 12.706 -13.051 7.152 1.00 74.09 N
ATOM 18 C4 U B 6 12.637 -14.140 6.329 1.00 73.65 C
ATOM 19 O4 U B 6 11.623 -14.790 6.313 1.00 74.83 O
ATOM 20 C5 U B 6 13.789 -14.407 5.544 1.00 74.62 C
ATOM 21 C6 U B 6 14.833 -13.587 5.666 1.00 76.44 C
ATOM 22 P C B 7 19.229 -14.720 8.601 1.00 83.65 P
ATOM 23 OP1 C B 7 20.669 -14.879 8.843 1.00 85.48 O
ATOM 24 OP2 C B 7 18.471 -15.926 8.192 1.00 84.88 O
ATOM 25 O5' C B 7 18.481 -14.176 9.880 1.00 80.08 O
TER
Atoms:
OP1: (1.452,-11.190,11.841)
OP2: (2.462,-12.794,10.134)
C3': (5.839,-9.371,11.704)
C1': (7.497,-10.960,12.037)
C5': (3.968,-10.647,12.857)
O4': (6.326,-11.362,12.732)
C8: (6.645,-12.527,10.229)
O2': (7.888,-8.782,12.877)
C6: (9.385,-13.512,8.386)
C5: (8.396,-13.015,9.215)
C4: (8.783,-12.149,10.224)
P: (2.397,-12.280,11.511)
C4': (5.426,-10.236,12.874)
C2': (7.352,-9.486,11.777)
C2: (10.877,-12.245,9.649)
N1: (10.657,-13.103,8.630)
N3: (10.014,-11.708,10.504)
N6: (9.095,-14.354,7.415)
N7: (7.061,-13.254,9.221)
N9: (7.626,-11.821,10.872)
O5': (3.818,-11.687,11.916)
O3': (5.354,-8.055,11.926)
OP2: (2.462,-12.794,10.134)
C3': (5.839,-9.371,11.704)
C1': (7.497,-10.960,12.037)
C5': (3.968,-10.647,12.857)
O4': (6.326,-11.362,12.732)
C8: (6.645,-12.527,10.229)
O2': (7.888,-8.782,12.877)
C6: (9.385,-13.512,8.386)
C5: (8.396,-13.015,9.215)
C4: (8.783,-12.149,10.224)
P: (2.397,-12.280,11.511)
C4': (5.426,-10.236,12.874)
C2': (7.352,-9.486,11.777)
C2: (10.877,-12.245,9.649)
N1: (10.657,-13.103,8.630)
N3: (10.014,-11.708,10.504)
N6: (9.095,-14.354,7.415)
N7: (7.061,-13.254,9.221)
N9: (7.626,-11.821,10.872)
O5': (3.818,-11.687,11.916)
O3': (5.354,-8.055,11.926)
C4: (12.637,-14.140,6.329)
N3: (12.706,-13.051,7.152)
OP1: (19.728,-15.364,2.924)
OP2: (17.436,-16.529,2.889)
C2: (13.758,-12.192,7.310)
C1': (16.093,-11.662,6.594)
C3': (17.845,-13.204,6.940)
O5': (17.830,-14.447,4.262)
O4': (16.824,-11.760,5.390)
C5': (18.545,-13.254,4.451)
P: (18.253,-15.291,2.975)
C4': (18.084,-12.443,5.646)
C2': (17.050,-12.136,7.674)
O2': (17.861,-11.059,8.097)
N1: (14.861,-12.495,6.516)
O4: (11.623,-14.790,6.313)
O2: (13.689,-11.255,8.096)
C6: (14.833,-13.587,5.666)
C5: (13.789,-14.407,5.544)
O3': (19.085,-13.508,7.568)
N3: (12.706,-13.051,7.152)
OP1: (19.728,-15.364,2.924)
OP2: (17.436,-16.529,2.889)
C2: (13.758,-12.192,7.310)
C1': (16.093,-11.662,6.594)
C3': (17.845,-13.204,6.940)
O5': (17.830,-14.447,4.262)
O4': (16.824,-11.760,5.390)
C5': (18.545,-13.254,4.451)
P: (18.253,-15.291,2.975)
C4': (18.084,-12.443,5.646)
C2': (17.050,-12.136,7.674)
O2': (17.861,-11.059,8.097)
N1: (14.861,-12.495,6.516)
O4: (11.623,-14.790,6.313)
O2: (13.689,-11.255,8.096)
C6: (14.833,-13.587,5.666)
C5: (13.789,-14.407,5.544)
O3': (19.085,-13.508,7.568)
Image (generated by PyMOL):