Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3CGR:A7:B5
Extra
PDB:
ATOM 1 P A A 7 -19.800 -47.312 3.292 1.00 36.02 P
ATOM 2 OP1 A A 7 -20.670 -47.117 2.106 1.00 38.17 O
ATOM 3 OP2 A A 7 -18.535 -48.082 3.165 1.00 35.23 O
ATOM 4 O5' A A 7 -19.424 -45.892 3.902 1.00 35.42 O
ATOM 5 C5' A A 7 -20.424 -44.924 4.185 1.00 34.63 C
ATOM 6 C4' A A 7 -19.801 -43.704 4.829 1.00 33.95 C
ATOM 7 O4' A A 7 -19.276 -44.073 6.132 1.00 35.00 O
ATOM 8 C3' A A 7 -18.598 -43.102 4.121 1.00 33.40 C
ATOM 9 O3' A A 7 -18.970 -42.232 3.060 1.00 33.30 O
ATOM 10 C2' A A 7 -17.934 -42.332 5.249 1.00 34.37 C
ATOM 11 O2' A A 7 -18.597 -41.117 5.525 1.00 35.60 O
ATOM 12 C1' A A 7 -18.117 -43.303 6.418 1.00 33.94 C
ATOM 13 N9 A A 7 -16.981 -44.212 6.563 1.00 32.15 N
ATOM 14 C8 A A 7 -16.894 -45.511 6.133 1.00 30.76 C
ATOM 15 N7 A A 7 -15.736 -46.071 6.374 1.00 31.08 N
ATOM 16 C5 A A 7 -15.009 -45.075 7.014 1.00 32.16 C
ATOM 17 C6 A A 7 -13.693 -45.035 7.524 1.00 31.67 C
ATOM 18 N6 A A 7 -12.836 -46.050 7.437 1.00 31.52 N
ATOM 19 N1 A A 7 -13.285 -43.894 8.121 1.00 32.53 N
ATOM 20 C2 A A 7 -14.135 -42.863 8.177 1.00 31.93 C
ATOM 21 N3 A A 7 -15.385 -42.774 7.724 1.00 31.45 N
ATOM 22 C4 A A 7 -15.768 -43.928 7.148 1.00 31.88 C
ATOM 23 P G A 8 -17.894 -41.864 1.915 1.00 35.15 P
ATOM 24 OP1 G A 8 -18.552 -41.009 0.912 1.00 36.50 O
ATOM 25 OP2 G A 8 -17.224 -43.113 1.481 1.00 34.92 O
ATOM 26 O5' G A 8 -16.820 -40.955 2.660 1.00 33.86 O
TER
ATOM 1 O3' C B 4 -4.307 -42.911 12.338 1.00 22.13 O
ATOM 2 P U B 5 -5.417 -42.994 13.499 1.00 20.63 P
ATOM 3 OP1 U B 5 -4.801 -42.502 14.750 1.00 22.14 O
ATOM 4 OP2 U B 5 -6.055 -44.338 13.464 1.00 20.34 O
ATOM 5 O5' U B 5 -6.534 -41.951 13.039 1.00 20.74 O
ATOM 6 C5' U B 5 -6.246 -40.565 12.896 1.00 19.57 C
ATOM 7 C4' U B 5 -7.468 -39.842 12.380 1.00 21.35 C
ATOM 8 O4' U B 5 -7.711 -40.230 11.002 1.00 21.10 O
ATOM 9 C3' U B 5 -8.773 -40.183 13.085 1.00 20.06 C
ATOM 10 O3' U B 5 -8.931 -39.426 14.263 1.00 21.64 O
ATOM 11 C2' U B 5 -9.801 -39.807 12.030 1.00 22.89 C
ATOM 12 O2' U B 5 -10.023 -38.414 11.915 1.00 22.45 O
ATOM 13 C1' U B 5 -9.111 -40.319 10.772 1.00 22.17 C
ATOM 14 N1 U B 5 -9.456 -41.724 10.519 1.00 24.53 N
ATOM 15 C2 U B 5 -10.661 -41.972 9.901 1.00 27.11 C
ATOM 16 O2 U B 5 -11.455 -41.087 9.637 1.00 31.07 O
ATOM 17 N3 U B 5 -10.910 -43.293 9.618 1.00 28.33 N
ATOM 18 C4 U B 5 -10.102 -44.369 9.921 1.00 29.45 C
ATOM 19 O4 U B 5 -10.433 -45.497 9.553 1.00 30.82 O
ATOM 20 C5 U B 5 -8.894 -44.032 10.613 1.00 27.28 C
ATOM 21 C6 U B 5 -8.616 -42.754 10.875 1.00 24.84 C
ATOM 22 P A B 6 -9.812 -40.001 15.462 1.00 23.02 P
ATOM 23 OP1 A B 6 -9.580 -39.029 16.560 1.00 24.59 O
ATOM 24 OP2 A B 6 -9.495 -41.445 15.678 1.00 22.53 O
ATOM 25 O5' A B 6 -11.307 -39.921 14.919 1.00 17.99 O
TER
ATOM 2 OP1 A A 7 -20.670 -47.117 2.106 1.00 38.17 O
ATOM 3 OP2 A A 7 -18.535 -48.082 3.165 1.00 35.23 O
ATOM 4 O5' A A 7 -19.424 -45.892 3.902 1.00 35.42 O
ATOM 5 C5' A A 7 -20.424 -44.924 4.185 1.00 34.63 C
ATOM 6 C4' A A 7 -19.801 -43.704 4.829 1.00 33.95 C
ATOM 7 O4' A A 7 -19.276 -44.073 6.132 1.00 35.00 O
ATOM 8 C3' A A 7 -18.598 -43.102 4.121 1.00 33.40 C
ATOM 9 O3' A A 7 -18.970 -42.232 3.060 1.00 33.30 O
ATOM 10 C2' A A 7 -17.934 -42.332 5.249 1.00 34.37 C
ATOM 11 O2' A A 7 -18.597 -41.117 5.525 1.00 35.60 O
ATOM 12 C1' A A 7 -18.117 -43.303 6.418 1.00 33.94 C
ATOM 13 N9 A A 7 -16.981 -44.212 6.563 1.00 32.15 N
ATOM 14 C8 A A 7 -16.894 -45.511 6.133 1.00 30.76 C
ATOM 15 N7 A A 7 -15.736 -46.071 6.374 1.00 31.08 N
ATOM 16 C5 A A 7 -15.009 -45.075 7.014 1.00 32.16 C
ATOM 17 C6 A A 7 -13.693 -45.035 7.524 1.00 31.67 C
ATOM 18 N6 A A 7 -12.836 -46.050 7.437 1.00 31.52 N
ATOM 19 N1 A A 7 -13.285 -43.894 8.121 1.00 32.53 N
ATOM 20 C2 A A 7 -14.135 -42.863 8.177 1.00 31.93 C
ATOM 21 N3 A A 7 -15.385 -42.774 7.724 1.00 31.45 N
ATOM 22 C4 A A 7 -15.768 -43.928 7.148 1.00 31.88 C
ATOM 23 P G A 8 -17.894 -41.864 1.915 1.00 35.15 P
ATOM 24 OP1 G A 8 -18.552 -41.009 0.912 1.00 36.50 O
ATOM 25 OP2 G A 8 -17.224 -43.113 1.481 1.00 34.92 O
ATOM 26 O5' G A 8 -16.820 -40.955 2.660 1.00 33.86 O
TER
ATOM 1 O3' C B 4 -4.307 -42.911 12.338 1.00 22.13 O
ATOM 2 P U B 5 -5.417 -42.994 13.499 1.00 20.63 P
ATOM 3 OP1 U B 5 -4.801 -42.502 14.750 1.00 22.14 O
ATOM 4 OP2 U B 5 -6.055 -44.338 13.464 1.00 20.34 O
ATOM 5 O5' U B 5 -6.534 -41.951 13.039 1.00 20.74 O
ATOM 6 C5' U B 5 -6.246 -40.565 12.896 1.00 19.57 C
ATOM 7 C4' U B 5 -7.468 -39.842 12.380 1.00 21.35 C
ATOM 8 O4' U B 5 -7.711 -40.230 11.002 1.00 21.10 O
ATOM 9 C3' U B 5 -8.773 -40.183 13.085 1.00 20.06 C
ATOM 10 O3' U B 5 -8.931 -39.426 14.263 1.00 21.64 O
ATOM 11 C2' U B 5 -9.801 -39.807 12.030 1.00 22.89 C
ATOM 12 O2' U B 5 -10.023 -38.414 11.915 1.00 22.45 O
ATOM 13 C1' U B 5 -9.111 -40.319 10.772 1.00 22.17 C
ATOM 14 N1 U B 5 -9.456 -41.724 10.519 1.00 24.53 N
ATOM 15 C2 U B 5 -10.661 -41.972 9.901 1.00 27.11 C
ATOM 16 O2 U B 5 -11.455 -41.087 9.637 1.00 31.07 O
ATOM 17 N3 U B 5 -10.910 -43.293 9.618 1.00 28.33 N
ATOM 18 C4 U B 5 -10.102 -44.369 9.921 1.00 29.45 C
ATOM 19 O4 U B 5 -10.433 -45.497 9.553 1.00 30.82 O
ATOM 20 C5 U B 5 -8.894 -44.032 10.613 1.00 27.28 C
ATOM 21 C6 U B 5 -8.616 -42.754 10.875 1.00 24.84 C
ATOM 22 P A B 6 -9.812 -40.001 15.462 1.00 23.02 P
ATOM 23 OP1 A B 6 -9.580 -39.029 16.560 1.00 24.59 O
ATOM 24 OP2 A B 6 -9.495 -41.445 15.678 1.00 22.53 O
ATOM 25 O5' A B 6 -11.307 -39.921 14.919 1.00 17.99 O
TER
Atoms:
OP1: (-20.670,-47.117,2.106)
OP2: (-18.535,-48.082,3.165)
C3': (-18.598,-43.102,4.121)
C1': (-18.117,-43.303,6.418)
C5': (-20.424,-44.924,4.185)
O4': (-19.276,-44.073,6.132)
C8: (-16.894,-45.511,6.133)
O2': (-18.597,-41.117,5.525)
C6: (-13.693,-45.035,7.524)
C5: (-15.009,-45.075,7.014)
C4: (-15.768,-43.928,7.148)
P: (-19.800,-47.312,3.292)
C4': (-19.801,-43.704,4.829)
C2': (-17.934,-42.332,5.249)
C2: (-14.135,-42.863,8.177)
N1: (-13.285,-43.894,8.121)
N3: (-15.385,-42.774,7.724)
N6: (-12.836,-46.050,7.437)
N7: (-15.736,-46.071,6.374)
N9: (-16.981,-44.212,6.563)
O5': (-19.424,-45.892,3.902)
O3': (-18.970,-42.232,3.060)
OP2: (-18.535,-48.082,3.165)
C3': (-18.598,-43.102,4.121)
C1': (-18.117,-43.303,6.418)
C5': (-20.424,-44.924,4.185)
O4': (-19.276,-44.073,6.132)
C8: (-16.894,-45.511,6.133)
O2': (-18.597,-41.117,5.525)
C6: (-13.693,-45.035,7.524)
C5: (-15.009,-45.075,7.014)
C4: (-15.768,-43.928,7.148)
P: (-19.800,-47.312,3.292)
C4': (-19.801,-43.704,4.829)
C2': (-17.934,-42.332,5.249)
C2: (-14.135,-42.863,8.177)
N1: (-13.285,-43.894,8.121)
N3: (-15.385,-42.774,7.724)
N6: (-12.836,-46.050,7.437)
N7: (-15.736,-46.071,6.374)
N9: (-16.981,-44.212,6.563)
O5': (-19.424,-45.892,3.902)
O3': (-18.970,-42.232,3.060)
C4: (-10.102,-44.369,9.921)
N3: (-10.910,-43.293,9.618)
OP1: (-4.801,-42.502,14.750)
OP2: (-6.055,-44.338,13.464)
C2: (-10.661,-41.972,9.901)
C1': (-9.111,-40.319,10.772)
C3': (-8.773,-40.183,13.085)
O5': (-6.534,-41.951,13.039)
O4': (-7.711,-40.230,11.002)
C5': (-6.246,-40.565,12.896)
P: (-5.417,-42.994,13.499)
C4': (-7.468,-39.842,12.380)
C2': (-9.801,-39.807,12.030)
O2': (-10.023,-38.414,11.915)
N1: (-9.456,-41.724,10.519)
O4: (-10.433,-45.497,9.553)
O2: (-11.455,-41.087,9.637)
C6: (-8.616,-42.754,10.875)
C5: (-8.894,-44.032,10.613)
O3': (-8.931,-39.426,14.263)
N3: (-10.910,-43.293,9.618)
OP1: (-4.801,-42.502,14.750)
OP2: (-6.055,-44.338,13.464)
C2: (-10.661,-41.972,9.901)
C1': (-9.111,-40.319,10.772)
C3': (-8.773,-40.183,13.085)
O5': (-6.534,-41.951,13.039)
O4': (-7.711,-40.230,11.002)
C5': (-6.246,-40.565,12.896)
P: (-5.417,-42.994,13.499)
C4': (-7.468,-39.842,12.380)
C2': (-9.801,-39.807,12.030)
O2': (-10.023,-38.414,11.915)
N1: (-9.456,-41.724,10.519)
O4: (-10.433,-45.497,9.553)
O2: (-11.455,-41.087,9.637)
C6: (-8.616,-42.754,10.875)
C5: (-8.894,-44.032,10.613)
O3': (-8.931,-39.426,14.263)
Image (generated by PyMOL):