Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11109:11278
Extra
PDB:
ATOM 1 O3' G A1108 82.002 -1.810 30.803 1.00 37.40 O
ATOM 2 P A A1109 80.772 -1.503 29.807 1.00 38.99 P
ATOM 3 OP1 A A1109 80.952 -0.120 29.311 1.00 39.14 O
ATOM 4 OP2 A A1109 79.520 -1.840 30.522 1.00 38.66 O
ATOM 5 O5' A A1109 80.978 -2.552 28.652 1.00 39.23 O
ATOM 6 C5' A A1109 81.874 -2.314 27.616 1.00 39.58 C
ATOM 7 C4' A A1109 82.017 -3.525 26.765 1.00 39.77 C
ATOM 8 O4' A A1109 82.259 -4.674 27.608 1.00 39.62 O
ATOM 9 C3' A A1109 80.796 -3.958 25.995 1.00 39.75 C
ATOM 10 O3' A A1109 80.480 -3.123 24.897 1.00 39.96 O
ATOM 11 C2' A A1109 81.170 -5.392 25.638 1.00 39.89 C
ATOM 12 O2' A A1109 82.215 -5.443 24.658 1.00 40.26 O
ATOM 13 C1' A A1109 81.767 -5.840 26.965 1.00 39.69 C
ATOM 14 N9 A A1109 80.751 -6.433 27.807 1.00 39.37 N
ATOM 15 C8 A A1109 80.281 -5.903 28.959 1.00 39.06 C
ATOM 16 N7 A A1109 79.302 -6.635 29.462 1.00 38.83 N
ATOM 17 C5 A A1109 79.171 -7.689 28.581 1.00 39.01 C
ATOM 18 C6 A A1109 78.302 -8.765 28.587 1.00 38.91 C
ATOM 19 N6 A A1109 77.438 -8.935 29.536 1.00 38.60 N
ATOM 20 N1 A A1109 78.407 -9.653 27.585 1.00 39.16 N
ATOM 21 C2 A A1109 79.342 -9.416 26.637 1.00 39.48 C
ATOM 22 N3 A A1109 80.213 -8.431 26.528 1.00 39.60 N
ATOM 23 C4 A A1109 80.075 -7.588 27.548 1.00 39.35 C
ATOM 24 P G A1110 78.944 -2.862 24.528 1.00 36.29 P
ATOM 25 OP1 G A1110 78.874 -1.777 23.550 1.00 36.53 O
ATOM 26 OP2 G A1110 78.214 -2.691 25.808 1.00 35.91 O
ATOM 27 O5' G A1110 78.533 -4.232 23.835 1.00 36.39 O
TER
ATOM 1 O3' C B1277 73.255 -18.273 28.073 1.00 34.15 O
ATOM 2 P U B1278 74.563 -18.503 28.932 1.00 36.43 P
ATOM 3 OP1 U B1278 74.750 -19.980 29.097 1.00 36.55 O
ATOM 4 OP2 U B1278 74.409 -17.642 30.170 1.00 36.08 O
ATOM 5 O5' U B1278 75.667 -17.914 27.975 1.00 36.72 O
ATOM 6 C5' U B1278 76.001 -18.596 26.794 1.00 37.08 C
ATOM 7 C4' U B1278 76.827 -17.735 25.912 1.00 37.31 C
ATOM 8 O4' U B1278 76.160 -16.481 25.720 1.00 37.17 O
ATOM 9 C3' U B1278 78.178 -17.320 26.463 1.00 37.33 C
ATOM 10 O3' U B1278 79.158 -18.325 26.340 1.00 37.58 O
ATOM 11 C2' U B1278 78.477 -16.143 25.612 1.00 37.47 C
ATOM 12 O2' U B1278 78.796 -16.624 24.328 1.00 37.85 O
ATOM 13 C1' U B1278 77.111 -15.481 25.523 1.00 37.26 C
ATOM 14 N1 U B1278 76.901 -14.415 26.527 1.00 36.94 N
ATOM 15 C2 U B1278 77.495 -13.181 26.380 1.00 36.98 C
ATOM 16 O2 U B1278 78.258 -12.918 25.496 1.00 37.27 O
ATOM 17 N3 U B1278 77.207 -12.229 27.314 1.00 36.69 N
ATOM 18 C4 U B1278 76.353 -12.362 28.355 1.00 36.36 C
ATOM 19 O4 U B1278 76.151 -11.409 29.090 1.00 36.14 O
ATOM 20 C5 U B1278 75.761 -13.639 28.435 1.00 36.34 C
ATOM 21 C6 U B1278 76.022 -14.588 27.544 1.00 36.61 C
ATOM 22 P C B1279 79.966 -18.810 27.621 1.00 43.08 P
ATOM 23 OP1 C B1279 80.428 -20.176 27.341 1.00 43.34 O
ATOM 24 OP2 C B1279 79.125 -18.591 28.825 1.00 42.69 O
ATOM 25 O5' C B1279 81.182 -17.802 27.608 1.00 43.18 O
TER
ATOM 2 P A A1109 80.772 -1.503 29.807 1.00 38.99 P
ATOM 3 OP1 A A1109 80.952 -0.120 29.311 1.00 39.14 O
ATOM 4 OP2 A A1109 79.520 -1.840 30.522 1.00 38.66 O
ATOM 5 O5' A A1109 80.978 -2.552 28.652 1.00 39.23 O
ATOM 6 C5' A A1109 81.874 -2.314 27.616 1.00 39.58 C
ATOM 7 C4' A A1109 82.017 -3.525 26.765 1.00 39.77 C
ATOM 8 O4' A A1109 82.259 -4.674 27.608 1.00 39.62 O
ATOM 9 C3' A A1109 80.796 -3.958 25.995 1.00 39.75 C
ATOM 10 O3' A A1109 80.480 -3.123 24.897 1.00 39.96 O
ATOM 11 C2' A A1109 81.170 -5.392 25.638 1.00 39.89 C
ATOM 12 O2' A A1109 82.215 -5.443 24.658 1.00 40.26 O
ATOM 13 C1' A A1109 81.767 -5.840 26.965 1.00 39.69 C
ATOM 14 N9 A A1109 80.751 -6.433 27.807 1.00 39.37 N
ATOM 15 C8 A A1109 80.281 -5.903 28.959 1.00 39.06 C
ATOM 16 N7 A A1109 79.302 -6.635 29.462 1.00 38.83 N
ATOM 17 C5 A A1109 79.171 -7.689 28.581 1.00 39.01 C
ATOM 18 C6 A A1109 78.302 -8.765 28.587 1.00 38.91 C
ATOM 19 N6 A A1109 77.438 -8.935 29.536 1.00 38.60 N
ATOM 20 N1 A A1109 78.407 -9.653 27.585 1.00 39.16 N
ATOM 21 C2 A A1109 79.342 -9.416 26.637 1.00 39.48 C
ATOM 22 N3 A A1109 80.213 -8.431 26.528 1.00 39.60 N
ATOM 23 C4 A A1109 80.075 -7.588 27.548 1.00 39.35 C
ATOM 24 P G A1110 78.944 -2.862 24.528 1.00 36.29 P
ATOM 25 OP1 G A1110 78.874 -1.777 23.550 1.00 36.53 O
ATOM 26 OP2 G A1110 78.214 -2.691 25.808 1.00 35.91 O
ATOM 27 O5' G A1110 78.533 -4.232 23.835 1.00 36.39 O
TER
ATOM 1 O3' C B1277 73.255 -18.273 28.073 1.00 34.15 O
ATOM 2 P U B1278 74.563 -18.503 28.932 1.00 36.43 P
ATOM 3 OP1 U B1278 74.750 -19.980 29.097 1.00 36.55 O
ATOM 4 OP2 U B1278 74.409 -17.642 30.170 1.00 36.08 O
ATOM 5 O5' U B1278 75.667 -17.914 27.975 1.00 36.72 O
ATOM 6 C5' U B1278 76.001 -18.596 26.794 1.00 37.08 C
ATOM 7 C4' U B1278 76.827 -17.735 25.912 1.00 37.31 C
ATOM 8 O4' U B1278 76.160 -16.481 25.720 1.00 37.17 O
ATOM 9 C3' U B1278 78.178 -17.320 26.463 1.00 37.33 C
ATOM 10 O3' U B1278 79.158 -18.325 26.340 1.00 37.58 O
ATOM 11 C2' U B1278 78.477 -16.143 25.612 1.00 37.47 C
ATOM 12 O2' U B1278 78.796 -16.624 24.328 1.00 37.85 O
ATOM 13 C1' U B1278 77.111 -15.481 25.523 1.00 37.26 C
ATOM 14 N1 U B1278 76.901 -14.415 26.527 1.00 36.94 N
ATOM 15 C2 U B1278 77.495 -13.181 26.380 1.00 36.98 C
ATOM 16 O2 U B1278 78.258 -12.918 25.496 1.00 37.27 O
ATOM 17 N3 U B1278 77.207 -12.229 27.314 1.00 36.69 N
ATOM 18 C4 U B1278 76.353 -12.362 28.355 1.00 36.36 C
ATOM 19 O4 U B1278 76.151 -11.409 29.090 1.00 36.14 O
ATOM 20 C5 U B1278 75.761 -13.639 28.435 1.00 36.34 C
ATOM 21 C6 U B1278 76.022 -14.588 27.544 1.00 36.61 C
ATOM 22 P C B1279 79.966 -18.810 27.621 1.00 43.08 P
ATOM 23 OP1 C B1279 80.428 -20.176 27.341 1.00 43.34 O
ATOM 24 OP2 C B1279 79.125 -18.591 28.825 1.00 42.69 O
ATOM 25 O5' C B1279 81.182 -17.802 27.608 1.00 43.18 O
TER
Atoms:
OP1: (80.952,-0.120,29.311)
OP2: (79.520,-1.840,30.522)
C3': (80.796,-3.958,25.995)
C1': (81.767,-5.840,26.965)
C5': (81.874,-2.314,27.616)
O4': (82.259,-4.674,27.608)
C8: (80.281,-5.903,28.959)
O2': (82.215,-5.443,24.658)
C6: (78.302,-8.765,28.587)
C5: (79.171,-7.689,28.581)
C4: (80.075,-7.588,27.548)
P: (80.772,-1.503,29.807)
C4': (82.017,-3.525,26.765)
C2': (81.170,-5.392,25.638)
C2: (79.342,-9.416,26.637)
N1: (78.407,-9.653,27.585)
N3: (80.213,-8.431,26.528)
N6: (77.438,-8.935,29.536)
N7: (79.302,-6.635,29.462)
N9: (80.751,-6.433,27.807)
O5': (80.978,-2.552,28.652)
O3': (80.480,-3.123,24.897)
OP2: (79.520,-1.840,30.522)
C3': (80.796,-3.958,25.995)
C1': (81.767,-5.840,26.965)
C5': (81.874,-2.314,27.616)
O4': (82.259,-4.674,27.608)
C8: (80.281,-5.903,28.959)
O2': (82.215,-5.443,24.658)
C6: (78.302,-8.765,28.587)
C5: (79.171,-7.689,28.581)
C4: (80.075,-7.588,27.548)
P: (80.772,-1.503,29.807)
C4': (82.017,-3.525,26.765)
C2': (81.170,-5.392,25.638)
C2: (79.342,-9.416,26.637)
N1: (78.407,-9.653,27.585)
N3: (80.213,-8.431,26.528)
N6: (77.438,-8.935,29.536)
N7: (79.302,-6.635,29.462)
N9: (80.751,-6.433,27.807)
O5': (80.978,-2.552,28.652)
O3': (80.480,-3.123,24.897)
C4: (76.353,-12.362,28.355)
N3: (77.207,-12.229,27.314)
OP1: (74.750,-19.980,29.097)
OP2: (74.409,-17.642,30.170)
C2: (77.495,-13.181,26.380)
C1': (77.111,-15.481,25.523)
C3': (78.178,-17.320,26.463)
O5': (75.667,-17.914,27.975)
O4': (76.160,-16.481,25.720)
C5': (76.001,-18.596,26.794)
P: (74.563,-18.503,28.932)
C4': (76.827,-17.735,25.912)
C2': (78.477,-16.143,25.612)
O2': (78.796,-16.624,24.328)
N1: (76.901,-14.415,26.527)
O4: (76.151,-11.409,29.090)
O2: (78.258,-12.918,25.496)
C6: (76.022,-14.588,27.544)
C5: (75.761,-13.639,28.435)
O3': (79.158,-18.325,26.340)
N3: (77.207,-12.229,27.314)
OP1: (74.750,-19.980,29.097)
OP2: (74.409,-17.642,30.170)
C2: (77.495,-13.181,26.380)
C1': (77.111,-15.481,25.523)
C3': (78.178,-17.320,26.463)
O5': (75.667,-17.914,27.975)
O4': (76.160,-16.481,25.720)
C5': (76.001,-18.596,26.794)
P: (74.563,-18.503,28.932)
C4': (76.827,-17.735,25.912)
C2': (78.477,-16.143,25.612)
O2': (78.796,-16.624,24.328)
N1: (76.901,-14.415,26.527)
O4: (76.151,-11.409,29.090)
O2: (78.258,-12.918,25.496)
C6: (76.022,-14.588,27.544)
C5: (75.761,-13.639,28.435)
O3': (79.158,-18.325,26.340)
Image (generated by PyMOL):