ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Y39:D6:D30

Extra

PDB:
ATOM 1 O3' G A 5 128.947 75.884 -0.545 1.00 54.54 O
ATOM 2 P A A 6 129.621 74.434 -0.431 1.00 53.04 P
ATOM 3 OP1 A A 6 129.455 73.758 -1.739 1.00 54.07 O
ATOM 4 OP2 A A 6 129.104 73.777 0.799 1.00 52.53 O
ATOM 5 O5' A A 6 131.158 74.798 -0.248 1.00 52.81 O
ATOM 6 C5' A A 6 131.761 74.716 1.026 1.00 52.00 C
ATOM 7 C4' A A 6 132.459 76.006 1.378 1.00 52.52 C
ATOM 8 O4' A A 6 131.586 77.154 1.180 1.00 53.20 O
ATOM 9 C3' A A 6 132.776 76.013 2.856 1.00 52.30 C
ATOM 10 O3' A A 6 134.011 75.362 3.059 1.00 51.44 O
ATOM 11 C2' A A 6 132.778 77.489 3.208 1.00 51.69 C
ATOM 12 O2' A A 6 133.986 78.098 2.868 1.00 53.02 O
ATOM 13 C1' A A 6 131.658 78.015 2.312 1.00 52.38 C
ATOM 14 N9 A A 6 130.353 78.013 2.982 1.00 52.70 N
ATOM 15 C8 A A 6 129.167 77.481 2.531 1.00 53.29 C
ATOM 16 N7 A A 6 128.167 77.626 3.369 1.00 52.98 N
ATOM 17 C5 A A 6 128.729 78.305 4.438 1.00 52.85 C
ATOM 18 C6 A A 6 128.192 78.761 5.647 1.00 53.53 C
ATOM 19 N6 A A 6 126.914 78.598 5.992 1.00 53.64 N
ATOM 20 N1 A A 6 129.022 79.403 6.504 1.00 54.67 N
ATOM 21 C2 A A 6 130.303 79.569 6.152 1.00 53.60 C
ATOM 22 N3 A A 6 130.924 79.187 5.039 1.00 54.36 N
ATOM 23 C4 A A 6 130.073 78.552 4.214 1.00 53.00 C
ATOM 24 P U A 7 134.085 74.117 4.064 1.00 52.64 P
ATOM 25 OP1 U A 7 135.353 73.390 3.792 1.00 52.84 O
ATOM 26 OP2 U A 7 132.795 73.380 4.018 1.00 52.58 O
ATOM 27 O5' U A 7 134.185 74.812 5.489 1.00 50.56 O
TER

ATOM 1 O3' A B 29 126.405 82.489 16.794 1.00 74.41 O
ATOM 2 P U B 30 126.212 83.818 15.901 1.00 76.65 P
ATOM 3 OP1 U B 30 126.341 84.982 16.834 1.00 75.00 O
ATOM 4 OP2 U B 30 124.962 83.632 15.107 1.00 76.44 O
ATOM 5 O5' U B 30 127.436 83.805 14.868 1.00 72.17 O
ATOM 6 C5' U B 30 128.746 83.503 15.325 1.00 67.16 C
ATOM 7 C4' U B 30 129.650 83.072 14.186 1.00 63.07 C
ATOM 8 O4' U B 30 129.163 81.873 13.536 1.00 60.95 O
ATOM 9 C3' U B 30 129.876 84.013 13.017 1.00 61.26 C
ATOM 10 O3' U B 30 130.788 85.043 13.402 1.00 60.95 O
ATOM 11 C2' U B 30 130.535 83.073 12.008 1.00 59.57 C
ATOM 12 O2' U B 30 131.910 82.899 12.278 1.00 58.46 O
ATOM 13 C1' U B 30 129.813 81.748 12.284 1.00 57.82 C
ATOM 14 N1 U B 30 128.839 81.366 11.252 1.00 54.36 N
ATOM 15 C2 U B 30 129.345 80.928 10.048 1.00 53.45 C
ATOM 16 O2 U B 30 130.538 80.824 9.832 1.00 53.14 O
ATOM 17 N3 U B 30 128.406 80.605 9.104 1.00 53.03 N
ATOM 18 C4 U B 30 127.040 80.654 9.247 1.00 51.62 C
ATOM 19 O4 U B 30 126.322 80.309 8.306 1.00 51.12 O
ATOM 20 C5 U B 30 126.595 81.104 10.526 1.00 51.33 C
ATOM 21 C6 U B 30 127.488 81.441 11.460 1.00 52.55 C
ATOM 22 P U B 31 131.038 86.305 12.437 1.00 58.75 P
ATOM 23 OP1 U B 31 132.066 87.135 13.132 1.00 59.59 O
ATOM 24 OP2 U B 31 129.760 86.920 12.015 1.00 58.53 O
ATOM 25 O5' U B 31 131.700 85.657 11.145 1.00 57.93 O
TER

Atoms:
OP1: (129.455,73.758,-1.739)
OP2: (129.104,73.777,0.799)
C3': (132.776,76.013,2.856)
C1': (131.658,78.015,2.312)
C5': (131.761,74.716,1.026)
O4': (131.586,77.154,1.180)
C8: (129.167,77.481,2.531)
O2': (133.986,78.098,2.868)
C6: (128.192,78.761,5.647)
C5: (128.729,78.305,4.438)
C4: (130.073,78.552,4.214)
P: (129.621,74.434,-0.431)
C4': (132.459,76.006,1.378)
C2': (132.778,77.489,3.208)
C2: (130.303,79.569,6.152)
N1: (129.022,79.403,6.504)
N3: (130.924,79.187,5.039)
N6: (126.914,78.598,5.992)
N7: (128.167,77.626,3.369)
N9: (130.353,78.013,2.982)
O5': (131.158,74.798,-0.248)
O3': (134.011,75.362,3.059)
C4: (127.040,80.654,9.247)
N3: (128.406,80.605,9.104)
OP1: (126.341,84.982,16.834)
OP2: (124.962,83.632,15.107)
C2: (129.345,80.928,10.048)
C1': (129.813,81.748,12.284)
C3': (129.876,84.013,13.017)
O5': (127.436,83.805,14.868)
O4': (129.163,81.873,13.536)
C5': (128.746,83.503,15.325)
P: (126.212,83.818,15.901)
C4': (129.650,83.072,14.186)
C2': (130.535,83.073,12.008)
O2': (131.910,82.899,12.278)
N1: (128.839,81.366,11.252)
O4: (126.322,80.309,8.306)
O2: (130.538,80.824,9.832)
C6: (127.488,81.441,11.460)
C5: (126.595,81.104,10.526)
O3': (130.788,85.043,13.402)
Image (generated by PyMOL):
PyMOL image
show in jmol