Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A12:A72
Extra
PDB:
ATOM 1 O3' G A 11 0.188 -6.735 6.171 1.00 43.75 O
ATOM 2 P A A 12 -1.055 -5.780 5.819 1.00 43.97 P
ATOM 3 OP1 A A 12 -0.517 -4.635 5.050 1.00 43.02 O
ATOM 4 OP2 A A 12 -1.773 -5.510 7.090 1.00 42.05 O
ATOM 5 O5' A A 12 -1.953 -6.699 4.874 1.00 35.84 O
ATOM 6 C5' A A 12 -1.472 -7.142 3.611 1.00 38.78 C
ATOM 7 C4' A A 12 -2.490 -8.005 2.903 1.00 41.20 C
ATOM 8 O4' A A 12 -2.678 -9.247 3.635 1.00 40.00 O
ATOM 9 C3' A A 12 -3.891 -7.423 2.789 1.00 43.41 C
ATOM 10 O3' A A 12 -4.026 -6.509 1.714 1.00 49.02 O
ATOM 11 C2' A A 12 -4.759 -8.669 2.651 1.00 43.82 C
ATOM 12 O2' A A 12 -4.689 -9.187 1.330 1.00 48.14 O
ATOM 13 C1' A A 12 -4.036 -9.637 3.585 1.00 39.38 C
ATOM 14 N9 A A 12 -4.579 -9.593 4.956 1.00 37.58 N
ATOM 15 C8 A A 12 -4.072 -8.882 6.015 1.00 37.60 C
ATOM 16 N7 A A 12 -4.750 -9.033 7.126 1.00 39.47 N
ATOM 17 C5 A A 12 -5.771 -9.907 6.779 1.00 34.72 C
ATOM 18 C6 A A 12 -6.829 -10.459 7.521 1.00 34.77 C
ATOM 19 N6 A A 12 -7.042 -10.207 8.815 1.00 32.29 N
ATOM 20 N1 A A 12 -7.673 -11.293 6.878 1.00 37.82 N
ATOM 21 C2 A A 12 -7.459 -11.546 5.580 1.00 38.67 C
ATOM 22 N3 A A 12 -6.502 -11.089 4.777 1.00 37.08 N
ATOM 23 C4 A A 12 -5.678 -10.263 5.446 1.00 36.95 C
ATOM 24 P U A 13 -5.011 -5.243 1.842 1.00 47.89 P
ATOM 25 OP1 U A 13 -4.682 -4.323 0.727 1.00 56.10 O
ATOM 26 OP2 U A 13 -4.905 -4.741 3.233 1.00 47.36 O
ATOM 27 O5' U A 13 -6.444 -5.890 1.605 1.00 38.91 O
TER
ATOM 1 O3' A B 71 -15.619 -15.131 11.426 1.00 42.52 O
ATOM 2 P U B 72 -14.561 -16.338 11.493 1.00 46.83 P
ATOM 3 OP1 U B 72 -15.328 -17.577 11.775 1.00 43.55 O
ATOM 4 OP2 U B 72 -13.492 -15.930 12.438 1.00 40.55 O
ATOM 5 O5' U B 72 -13.984 -16.381 10.012 1.00 38.19 O
ATOM 6 C5' U B 72 -14.844 -16.581 8.902 1.00 43.38 C
ATOM 7 C4' U B 72 -14.144 -16.276 7.603 1.00 45.29 C
ATOM 8 O4' U B 72 -13.849 -14.857 7.527 1.00 41.65 O
ATOM 9 C3' U B 72 -12.791 -16.941 7.405 1.00 45.95 C
ATOM 10 O3' U B 72 -12.890 -18.286 6.974 1.00 50.90 O
ATOM 11 C2' U B 72 -12.116 -16.022 6.398 1.00 47.11 C
ATOM 12 O2' U B 72 -12.611 -16.261 5.088 1.00 50.46 O
ATOM 13 C1' U B 72 -12.618 -14.657 6.860 1.00 45.64 C
ATOM 14 N1 U B 72 -11.675 -14.008 7.796 1.00 43.25 N
ATOM 15 C2 U B 72 -10.595 -13.346 7.247 1.00 41.50 C
ATOM 16 O2 U B 72 -10.400 -13.288 6.046 1.00 42.69 O
ATOM 17 N3 U B 72 -9.749 -12.758 8.153 1.00 38.50 N
ATOM 18 C4 U B 72 -9.878 -12.765 9.526 1.00 38.78 C
ATOM 19 O4 U B 72 -9.034 -12.188 10.212 1.00 36.90 O
ATOM 20 C5 U B 72 -11.023 -13.471 10.017 1.00 37.26 C
ATOM 21 C6 U B 72 -11.864 -14.054 9.157 1.00 38.03 C
ATOM 22 P C B 73 -11.731 -19.337 7.340 1.00 58.77 P
ATOM 23 OP1 C B 73 -12.175 -20.664 6.846 1.00 61.30 O
ATOM 24 OP2 C B 73 -11.435 -19.177 8.786 1.00 49.66 O
ATOM 25 O5' C B 73 -10.495 -18.820 6.473 1.00 49.05 O
TER
ATOM 2 P A A 12 -1.055 -5.780 5.819 1.00 43.97 P
ATOM 3 OP1 A A 12 -0.517 -4.635 5.050 1.00 43.02 O
ATOM 4 OP2 A A 12 -1.773 -5.510 7.090 1.00 42.05 O
ATOM 5 O5' A A 12 -1.953 -6.699 4.874 1.00 35.84 O
ATOM 6 C5' A A 12 -1.472 -7.142 3.611 1.00 38.78 C
ATOM 7 C4' A A 12 -2.490 -8.005 2.903 1.00 41.20 C
ATOM 8 O4' A A 12 -2.678 -9.247 3.635 1.00 40.00 O
ATOM 9 C3' A A 12 -3.891 -7.423 2.789 1.00 43.41 C
ATOM 10 O3' A A 12 -4.026 -6.509 1.714 1.00 49.02 O
ATOM 11 C2' A A 12 -4.759 -8.669 2.651 1.00 43.82 C
ATOM 12 O2' A A 12 -4.689 -9.187 1.330 1.00 48.14 O
ATOM 13 C1' A A 12 -4.036 -9.637 3.585 1.00 39.38 C
ATOM 14 N9 A A 12 -4.579 -9.593 4.956 1.00 37.58 N
ATOM 15 C8 A A 12 -4.072 -8.882 6.015 1.00 37.60 C
ATOM 16 N7 A A 12 -4.750 -9.033 7.126 1.00 39.47 N
ATOM 17 C5 A A 12 -5.771 -9.907 6.779 1.00 34.72 C
ATOM 18 C6 A A 12 -6.829 -10.459 7.521 1.00 34.77 C
ATOM 19 N6 A A 12 -7.042 -10.207 8.815 1.00 32.29 N
ATOM 20 N1 A A 12 -7.673 -11.293 6.878 1.00 37.82 N
ATOM 21 C2 A A 12 -7.459 -11.546 5.580 1.00 38.67 C
ATOM 22 N3 A A 12 -6.502 -11.089 4.777 1.00 37.08 N
ATOM 23 C4 A A 12 -5.678 -10.263 5.446 1.00 36.95 C
ATOM 24 P U A 13 -5.011 -5.243 1.842 1.00 47.89 P
ATOM 25 OP1 U A 13 -4.682 -4.323 0.727 1.00 56.10 O
ATOM 26 OP2 U A 13 -4.905 -4.741 3.233 1.00 47.36 O
ATOM 27 O5' U A 13 -6.444 -5.890 1.605 1.00 38.91 O
TER
ATOM 1 O3' A B 71 -15.619 -15.131 11.426 1.00 42.52 O
ATOM 2 P U B 72 -14.561 -16.338 11.493 1.00 46.83 P
ATOM 3 OP1 U B 72 -15.328 -17.577 11.775 1.00 43.55 O
ATOM 4 OP2 U B 72 -13.492 -15.930 12.438 1.00 40.55 O
ATOM 5 O5' U B 72 -13.984 -16.381 10.012 1.00 38.19 O
ATOM 6 C5' U B 72 -14.844 -16.581 8.902 1.00 43.38 C
ATOM 7 C4' U B 72 -14.144 -16.276 7.603 1.00 45.29 C
ATOM 8 O4' U B 72 -13.849 -14.857 7.527 1.00 41.65 O
ATOM 9 C3' U B 72 -12.791 -16.941 7.405 1.00 45.95 C
ATOM 10 O3' U B 72 -12.890 -18.286 6.974 1.00 50.90 O
ATOM 11 C2' U B 72 -12.116 -16.022 6.398 1.00 47.11 C
ATOM 12 O2' U B 72 -12.611 -16.261 5.088 1.00 50.46 O
ATOM 13 C1' U B 72 -12.618 -14.657 6.860 1.00 45.64 C
ATOM 14 N1 U B 72 -11.675 -14.008 7.796 1.00 43.25 N
ATOM 15 C2 U B 72 -10.595 -13.346 7.247 1.00 41.50 C
ATOM 16 O2 U B 72 -10.400 -13.288 6.046 1.00 42.69 O
ATOM 17 N3 U B 72 -9.749 -12.758 8.153 1.00 38.50 N
ATOM 18 C4 U B 72 -9.878 -12.765 9.526 1.00 38.78 C
ATOM 19 O4 U B 72 -9.034 -12.188 10.212 1.00 36.90 O
ATOM 20 C5 U B 72 -11.023 -13.471 10.017 1.00 37.26 C
ATOM 21 C6 U B 72 -11.864 -14.054 9.157 1.00 38.03 C
ATOM 22 P C B 73 -11.731 -19.337 7.340 1.00 58.77 P
ATOM 23 OP1 C B 73 -12.175 -20.664 6.846 1.00 61.30 O
ATOM 24 OP2 C B 73 -11.435 -19.177 8.786 1.00 49.66 O
ATOM 25 O5' C B 73 -10.495 -18.820 6.473 1.00 49.05 O
TER
Atoms:
OP1: (-0.517,-4.635,5.050)
OP2: (-1.773,-5.510,7.090)
C3': (-3.891,-7.423,2.789)
C1': (-4.036,-9.637,3.585)
C5': (-1.472,-7.142,3.611)
O4': (-2.678,-9.247,3.635)
C8: (-4.072,-8.882,6.015)
O2': (-4.689,-9.187,1.330)
C6: (-6.829,-10.459,7.521)
C5: (-5.771,-9.907,6.779)
C4: (-5.678,-10.263,5.446)
P: (-1.055,-5.780,5.819)
C4': (-2.490,-8.005,2.903)
C2': (-4.759,-8.669,2.651)
C2: (-7.459,-11.546,5.580)
N1: (-7.673,-11.293,6.878)
N3: (-6.502,-11.089,4.777)
N6: (-7.042,-10.207,8.815)
N7: (-4.750,-9.033,7.126)
N9: (-4.579,-9.593,4.956)
O5': (-1.953,-6.699,4.874)
O3': (-4.026,-6.509,1.714)
OP2: (-1.773,-5.510,7.090)
C3': (-3.891,-7.423,2.789)
C1': (-4.036,-9.637,3.585)
C5': (-1.472,-7.142,3.611)
O4': (-2.678,-9.247,3.635)
C8: (-4.072,-8.882,6.015)
O2': (-4.689,-9.187,1.330)
C6: (-6.829,-10.459,7.521)
C5: (-5.771,-9.907,6.779)
C4: (-5.678,-10.263,5.446)
P: (-1.055,-5.780,5.819)
C4': (-2.490,-8.005,2.903)
C2': (-4.759,-8.669,2.651)
C2: (-7.459,-11.546,5.580)
N1: (-7.673,-11.293,6.878)
N3: (-6.502,-11.089,4.777)
N6: (-7.042,-10.207,8.815)
N7: (-4.750,-9.033,7.126)
N9: (-4.579,-9.593,4.956)
O5': (-1.953,-6.699,4.874)
O3': (-4.026,-6.509,1.714)
C4: (-9.878,-12.765,9.526)
N3: (-9.749,-12.758,8.153)
OP1: (-15.328,-17.577,11.775)
OP2: (-13.492,-15.930,12.438)
C2: (-10.595,-13.346,7.247)
C1': (-12.618,-14.657,6.860)
C3': (-12.791,-16.941,7.405)
O5': (-13.984,-16.381,10.012)
O4': (-13.849,-14.857,7.527)
C5': (-14.844,-16.581,8.902)
P: (-14.561,-16.338,11.493)
C4': (-14.144,-16.276,7.603)
C2': (-12.116,-16.022,6.398)
O2': (-12.611,-16.261,5.088)
N1: (-11.675,-14.008,7.796)
O4: (-9.034,-12.188,10.212)
O2: (-10.400,-13.288,6.046)
C6: (-11.864,-14.054,9.157)
C5: (-11.023,-13.471,10.017)
O3': (-12.890,-18.286,6.974)
N3: (-9.749,-12.758,8.153)
OP1: (-15.328,-17.577,11.775)
OP2: (-13.492,-15.930,12.438)
C2: (-10.595,-13.346,7.247)
C1': (-12.618,-14.657,6.860)
C3': (-12.791,-16.941,7.405)
O5': (-13.984,-16.381,10.012)
O4': (-13.849,-14.857,7.527)
C5': (-14.844,-16.581,8.902)
P: (-14.561,-16.338,11.493)
C4': (-14.144,-16.276,7.603)
C2': (-12.116,-16.022,6.398)
O2': (-12.611,-16.261,5.088)
N1: (-11.675,-14.008,7.796)
O4: (-9.034,-12.188,10.212)
O2: (-10.400,-13.288,6.046)
C6: (-11.864,-14.054,9.157)
C5: (-11.023,-13.471,10.017)
O3': (-12.890,-18.286,6.974)
Image (generated by PyMOL):