Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12725:12088
Extra
PDB:
ATOM 1 O3' G A2724 4.251 0.571 66.855 1.00 67.97 O
ATOM 2 P G A2725 4.607 2.043 67.345 1.00 51.58 P
ATOM 3 OP1 G A2725 4.522 2.937 66.163 1.00 51.69 O
ATOM 4 OP2 G A2725 5.885 1.981 68.112 1.00 51.35 O
ATOM 5 O5' G A2725 3.412 2.355 68.346 1.00 51.81 O
ATOM 6 C5' G A2725 2.264 3.052 67.923 1.00 52.08 C
ATOM 7 C4' G A2725 1.373 3.282 69.077 1.00 52.26 C
ATOM 8 O4' G A2725 1.467 2.152 69.970 1.00 52.15 O
ATOM 9 C3' G A2725 1.768 4.408 69.958 1.00 52.30 C
ATOM 10 O3' G A2725 1.500 5.643 69.426 1.00 52.47 O
ATOM 11 C2' G A2725 1.040 4.105 71.238 1.00 52.41 C
ATOM 12 O2' G A2725 -0.342 4.387 71.107 1.00 52.71 O
ATOM 13 C1' G A2725 1.241 2.588 71.296 1.00 52.23 C
ATOM 14 N9 G A2725 2.413 2.248 72.094 1.00 52.00 N
ATOM 15 C8 G A2725 3.597 1.758 71.680 1.00 51.74 C
ATOM 16 N7 G A2725 4.437 1.641 72.666 1.00 51.60 N
ATOM 17 C5 G A2725 3.739 2.078 73.767 1.00 51.78 C
ATOM 18 C6 G A2725 4.136 2.179 75.110 1.00 51.76 C
ATOM 19 O6 G A2725 5.257 1.872 75.544 1.00 51.56 O
ATOM 20 N1 G A2725 3.091 2.671 75.920 1.00 52.02 N
ATOM 21 C2 G A2725 1.832 3.055 75.475 1.00 52.27 C
ATOM 22 N2 G A2725 0.952 3.541 76.366 1.00 52.51 N
ATOM 23 N3 G A2725 1.470 2.979 74.207 1.00 52.28 N
ATOM 24 C4 G A2725 2.474 2.478 73.431 1.00 52.03 C
ATOM 25 P U A2726 2.671 6.699 69.485 1.00 53.07 P
ATOM 26 OP1 U A2726 2.235 7.881 68.714 1.00 53.29 O
ATOM 27 OP2 U A2726 3.902 5.977 69.060 1.00 52.76 O
ATOM 28 O5' U A2726 2.755 7.043 71.051 1.00 53.10 O
TER
ATOM 1 O3' A B2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 2 P A B2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 3 OP1 A B2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 4 OP2 A B2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 5 O5' A B2088 -4.654 8.363 74.164 1.00 55.06 O
ATOM 6 C5' A B2088 -3.836 8.759 75.258 1.00 54.97 C
ATOM 7 C4' A B2088 -2.625 7.890 75.361 1.00 54.61 C
ATOM 8 O4' A B2088 -1.818 8.338 76.482 1.00 54.54 O
ATOM 9 C3' A B2088 -2.945 6.412 75.612 1.00 54.51 C
ATOM 10 O3' A B2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 11 C2' A B2088 -2.393 6.129 76.994 1.00 54.42 C
ATOM 12 O2' A B2088 -1.894 4.806 77.206 1.00 54.18 O
ATOM 13 C1' A B2088 -1.317 7.206 77.138 1.00 54.33 C
ATOM 14 N9 A B2088 -1.050 7.503 78.519 1.00 54.39 N
ATOM 15 C8 A B2088 -1.952 7.524 79.543 1.00 54.63 C
ATOM 16 N7 A B2088 -1.391 7.610 80.700 1.00 54.60 N
ATOM 17 C5 A B2088 -0.038 7.568 80.387 1.00 54.32 C
ATOM 18 C6 A B2088 1.089 7.616 81.174 1.00 54.17 C
ATOM 19 N6 A B2088 1.016 7.726 82.479 1.00 54.30 N
ATOM 20 N1 A B2088 2.272 7.552 80.546 1.00 53.90 N
ATOM 21 C2 A B2088 2.325 7.458 79.210 1.00 53.79 C
ATOM 22 N3 A B2088 1.345 7.419 78.344 1.00 53.91 N
ATOM 23 C4 A B2088 0.190 7.471 79.031 1.00 54.17 C
ATOM 24 P U B2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 25 OP1 U B2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 26 OP2 U B2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 27 O5' U B2089 -2.577 3.224 73.688 1.00 50.69 O
TER
ATOM 2 P G A2725 4.607 2.043 67.345 1.00 51.58 P
ATOM 3 OP1 G A2725 4.522 2.937 66.163 1.00 51.69 O
ATOM 4 OP2 G A2725 5.885 1.981 68.112 1.00 51.35 O
ATOM 5 O5' G A2725 3.412 2.355 68.346 1.00 51.81 O
ATOM 6 C5' G A2725 2.264 3.052 67.923 1.00 52.08 C
ATOM 7 C4' G A2725 1.373 3.282 69.077 1.00 52.26 C
ATOM 8 O4' G A2725 1.467 2.152 69.970 1.00 52.15 O
ATOM 9 C3' G A2725 1.768 4.408 69.958 1.00 52.30 C
ATOM 10 O3' G A2725 1.500 5.643 69.426 1.00 52.47 O
ATOM 11 C2' G A2725 1.040 4.105 71.238 1.00 52.41 C
ATOM 12 O2' G A2725 -0.342 4.387 71.107 1.00 52.71 O
ATOM 13 C1' G A2725 1.241 2.588 71.296 1.00 52.23 C
ATOM 14 N9 G A2725 2.413 2.248 72.094 1.00 52.00 N
ATOM 15 C8 G A2725 3.597 1.758 71.680 1.00 51.74 C
ATOM 16 N7 G A2725 4.437 1.641 72.666 1.00 51.60 N
ATOM 17 C5 G A2725 3.739 2.078 73.767 1.00 51.78 C
ATOM 18 C6 G A2725 4.136 2.179 75.110 1.00 51.76 C
ATOM 19 O6 G A2725 5.257 1.872 75.544 1.00 51.56 O
ATOM 20 N1 G A2725 3.091 2.671 75.920 1.00 52.02 N
ATOM 21 C2 G A2725 1.832 3.055 75.475 1.00 52.27 C
ATOM 22 N2 G A2725 0.952 3.541 76.366 1.00 52.51 N
ATOM 23 N3 G A2725 1.470 2.979 74.207 1.00 52.28 N
ATOM 24 C4 G A2725 2.474 2.478 73.431 1.00 52.03 C
ATOM 25 P U A2726 2.671 6.699 69.485 1.00 53.07 P
ATOM 26 OP1 U A2726 2.235 7.881 68.714 1.00 53.29 O
ATOM 27 OP2 U A2726 3.902 5.977 69.060 1.00 52.76 O
ATOM 28 O5' U A2726 2.755 7.043 71.051 1.00 53.10 O
TER
ATOM 1 O3' A B2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 2 P A B2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 3 OP1 A B2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 4 OP2 A B2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 5 O5' A B2088 -4.654 8.363 74.164 1.00 55.06 O
ATOM 6 C5' A B2088 -3.836 8.759 75.258 1.00 54.97 C
ATOM 7 C4' A B2088 -2.625 7.890 75.361 1.00 54.61 C
ATOM 8 O4' A B2088 -1.818 8.338 76.482 1.00 54.54 O
ATOM 9 C3' A B2088 -2.945 6.412 75.612 1.00 54.51 C
ATOM 10 O3' A B2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 11 C2' A B2088 -2.393 6.129 76.994 1.00 54.42 C
ATOM 12 O2' A B2088 -1.894 4.806 77.206 1.00 54.18 O
ATOM 13 C1' A B2088 -1.317 7.206 77.138 1.00 54.33 C
ATOM 14 N9 A B2088 -1.050 7.503 78.519 1.00 54.39 N
ATOM 15 C8 A B2088 -1.952 7.524 79.543 1.00 54.63 C
ATOM 16 N7 A B2088 -1.391 7.610 80.700 1.00 54.60 N
ATOM 17 C5 A B2088 -0.038 7.568 80.387 1.00 54.32 C
ATOM 18 C6 A B2088 1.089 7.616 81.174 1.00 54.17 C
ATOM 19 N6 A B2088 1.016 7.726 82.479 1.00 54.30 N
ATOM 20 N1 A B2088 2.272 7.552 80.546 1.00 53.90 N
ATOM 21 C2 A B2088 2.325 7.458 79.210 1.00 53.79 C
ATOM 22 N3 A B2088 1.345 7.419 78.344 1.00 53.91 N
ATOM 23 C4 A B2088 0.190 7.471 79.031 1.00 54.17 C
ATOM 24 P U B2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 25 OP1 U B2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 26 OP2 U B2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 27 O5' U B2089 -2.577 3.224 73.688 1.00 50.69 O
TER
Atoms:
OP1: (4.522,2.937,66.163)
OP2: (5.885,1.981,68.112)
C3': (1.768,4.408,69.958)
C1': (1.241,2.588,71.296)
C5': (2.264,3.052,67.923)
O6: (5.257,1.872,75.544)
O4': (1.467,2.152,69.970)
C8: (3.597,1.758,71.680)
C2: (1.832,3.055,75.475)
C6: (4.136,2.179,75.110)
C5: (3.739,2.078,73.767)
C4: (2.474,2.478,73.431)
P: (4.607,2.043,67.345)
C4': (1.373,3.282,69.077)
C2': (1.040,4.105,71.238)
O2': (-0.342,4.387,71.107)
N1: (3.091,2.671,75.920)
N2: (0.952,3.541,76.366)
N3: (1.470,2.979,74.207)
N7: (4.437,1.641,72.666)
N9: (2.413,2.248,72.094)
O5': (3.412,2.355,68.346)
O3': (1.500,5.643,69.426)
OP2: (5.885,1.981,68.112)
C3': (1.768,4.408,69.958)
C1': (1.241,2.588,71.296)
C5': (2.264,3.052,67.923)
O6: (5.257,1.872,75.544)
O4': (1.467,2.152,69.970)
C8: (3.597,1.758,71.680)
C2: (1.832,3.055,75.475)
C6: (4.136,2.179,75.110)
C5: (3.739,2.078,73.767)
C4: (2.474,2.478,73.431)
P: (4.607,2.043,67.345)
C4': (1.373,3.282,69.077)
C2': (1.040,4.105,71.238)
O2': (-0.342,4.387,71.107)
N1: (3.091,2.671,75.920)
N2: (0.952,3.541,76.366)
N3: (1.470,2.979,74.207)
N7: (4.437,1.641,72.666)
N9: (2.413,2.248,72.094)
O5': (3.412,2.355,68.346)
O3': (1.500,5.643,69.426)
OP1: (-5.561,10.700,74.137)
OP2: (-5.815,9.179,72.105)
C3': (-2.945,6.412,75.612)
C1': (-1.317,7.206,77.138)
C5': (-3.836,8.759,75.258)
O4': (-1.818,8.338,76.482)
C8: (-1.952,7.524,79.543)
O2': (-1.894,4.806,77.206)
C6: (1.089,7.616,81.174)
C5: (-0.038,7.568,80.387)
C4: (0.190,7.471,79.031)
P: (-5.735,9.344,73.576)
C4': (-2.625,7.890,75.361)
C2': (-2.393,6.129,76.994)
C2: (2.325,7.458,79.210)
N1: (2.272,7.552,80.546)
N3: (1.345,7.419,78.344)
N6: (1.016,7.726,82.479)
N7: (-1.391,7.610,80.700)
N9: (-1.050,7.503,78.519)
O5': (-4.654,8.363,74.164)
O3': (-2.338,5.570,74.649)
OP2: (-5.815,9.179,72.105)
C3': (-2.945,6.412,75.612)
C1': (-1.317,7.206,77.138)
C5': (-3.836,8.759,75.258)
O4': (-1.818,8.338,76.482)
C8: (-1.952,7.524,79.543)
O2': (-1.894,4.806,77.206)
C6: (1.089,7.616,81.174)
C5: (-0.038,7.568,80.387)
C4: (0.190,7.471,79.031)
P: (-5.735,9.344,73.576)
C4': (-2.625,7.890,75.361)
C2': (-2.393,6.129,76.994)
C2: (2.325,7.458,79.210)
N1: (2.272,7.552,80.546)
N3: (1.345,7.419,78.344)
N6: (1.016,7.726,82.479)
N7: (-1.391,7.610,80.700)
N9: (-1.050,7.503,78.519)
O5': (-4.654,8.363,74.164)
O3': (-2.338,5.570,74.649)
Image (generated by PyMOL):