Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11992:12120
Extra
PDB:
ATOM 1 O3' U A1991 2.357 -6.418 98.675 1.00 38.43 O
ATOM 2 P G A1992 2.572 -5.038 97.967 1.00 37.36 P
ATOM 3 OP1 G A1992 3.588 -5.247 96.940 1.00 37.01 O
ATOM 4 OP2 G A1992 2.831 -4.034 99.010 1.00 37.56 O
ATOM 5 O5' G A1992 1.158 -4.788 97.298 1.00 37.49 O
ATOM 6 C5' G A1992 0.605 -5.780 96.468 1.00 37.39 C
ATOM 7 C4' G A1992 -0.887 -5.647 96.327 1.00 37.64 C
ATOM 8 O4' G A1992 -1.546 -5.817 97.604 1.00 37.96 O
ATOM 9 C3' G A1992 -1.420 -4.319 95.811 1.00 37.71 C
ATOM 10 O3' G A1992 -1.247 -4.165 94.401 1.00 37.47 O
ATOM 11 C2' G A1992 -2.872 -4.425 96.222 1.00 38.04 C
ATOM 12 O2' G A1992 -3.523 -5.316 95.363 1.00 37.98 O
ATOM 13 C1' G A1992 -2.757 -5.101 97.596 1.00 38.21 C
ATOM 14 N9 G A1992 -2.732 -4.105 98.686 1.00 38.45 N
ATOM 15 C8 G A1992 -1.622 -3.682 99.383 1.00 38.40 C
ATOM 16 N7 G A1992 -1.875 -2.746 100.254 1.00 38.67 N
ATOM 17 C5 G A1992 -3.230 -2.510 100.101 1.00 38.90 C
ATOM 18 C6 G A1992 -4.080 -1.591 100.787 1.00 39.25 C
ATOM 19 O6 G A1992 -3.760 -0.798 101.671 1.00 39.43 O
ATOM 20 N1 G A1992 -5.406 -1.657 100.354 1.00 39.42 N
ATOM 21 C2 G A1992 -5.816 -2.497 99.363 1.00 39.26 C
ATOM 22 N2 G A1992 -7.118 -2.427 99.085 1.00 39.48 N
ATOM 23 N3 G A1992 -5.038 -3.349 98.708 1.00 38.94 N
ATOM 24 C4 G A1992 -3.773 -3.325 99.130 1.00 38.77 C
ATOM 25 P U A1993 -1.295 -2.715 93.704 1.00 41.13 P
ATOM 26 OP1 U A1993 -1.187 -2.916 92.296 1.00 40.89 O
ATOM 27 OP2 U A1993 -0.290 -1.869 94.363 1.00 41.10 O
ATOM 28 O5' U A1993 -2.739 -2.192 94.059 1.00 41.48 O
TER
ATOM 1 O3' A B2119 -11.728 -5.325 89.074 1.00 50.35 O
ATOM 2 P A B2120 -11.761 -6.154 90.432 1.00 43.93 P
ATOM 3 OP1 A B2120 -11.012 -7.403 90.189 1.00 43.68 O
ATOM 4 OP2 A B2120 -13.196 -6.219 90.863 1.00 44.32 O
ATOM 5 O5' A B2120 -10.928 -5.243 91.425 1.00 43.91 O
ATOM 6 C5' A B2120 -10.001 -5.819 92.335 1.00 43.79 C
ATOM 7 C4' A B2120 -9.019 -4.795 92.797 1.00 43.69 C
ATOM 8 O4' A B2120 -9.711 -3.543 92.990 1.00 43.94 O
ATOM 9 C3' A B2120 -8.281 -5.127 94.095 1.00 43.69 C
ATOM 10 O3' A B2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 11 C2' A B2120 -8.787 -4.089 95.097 1.00 44.01 C
ATOM 12 O2' A B2120 -7.785 -3.608 95.986 1.00 43.96 O
ATOM 13 C1' A B2120 -9.320 -2.963 94.206 1.00 44.06 C
ATOM 14 N9 A B2120 -10.473 -2.278 94.784 1.00 44.44 N
ATOM 15 C8 A B2120 -11.783 -2.618 94.709 1.00 44.70 C
ATOM 16 N7 A B2120 -12.612 -1.844 95.361 1.00 45.05 N
ATOM 17 C5 A B2120 -11.757 -0.940 95.931 1.00 45.01 C
ATOM 18 C6 A B2120 -12.014 0.137 96.750 1.00 45.28 C
ATOM 19 N6 A B2120 -13.213 0.453 97.135 1.00 45.65 N
ATOM 20 N1 A B2120 -10.976 0.877 97.149 1.00 45.18 N
ATOM 21 C2 A B2120 -9.724 0.530 96.772 1.00 44.81 C
ATOM 22 N3 A B2120 -9.347 -0.460 95.982 1.00 44.51 N
ATOM 23 C4 A B2120 -10.437 -1.174 95.595 1.00 44.64 C
ATOM 24 P U B2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 25 OP1 U B2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 26 OP2 U B2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 27 O5' U B2121 -6.394 -5.859 91.701 1.00 57.01 O
TER
ATOM 2 P G A1992 2.572 -5.038 97.967 1.00 37.36 P
ATOM 3 OP1 G A1992 3.588 -5.247 96.940 1.00 37.01 O
ATOM 4 OP2 G A1992 2.831 -4.034 99.010 1.00 37.56 O
ATOM 5 O5' G A1992 1.158 -4.788 97.298 1.00 37.49 O
ATOM 6 C5' G A1992 0.605 -5.780 96.468 1.00 37.39 C
ATOM 7 C4' G A1992 -0.887 -5.647 96.327 1.00 37.64 C
ATOM 8 O4' G A1992 -1.546 -5.817 97.604 1.00 37.96 O
ATOM 9 C3' G A1992 -1.420 -4.319 95.811 1.00 37.71 C
ATOM 10 O3' G A1992 -1.247 -4.165 94.401 1.00 37.47 O
ATOM 11 C2' G A1992 -2.872 -4.425 96.222 1.00 38.04 C
ATOM 12 O2' G A1992 -3.523 -5.316 95.363 1.00 37.98 O
ATOM 13 C1' G A1992 -2.757 -5.101 97.596 1.00 38.21 C
ATOM 14 N9 G A1992 -2.732 -4.105 98.686 1.00 38.45 N
ATOM 15 C8 G A1992 -1.622 -3.682 99.383 1.00 38.40 C
ATOM 16 N7 G A1992 -1.875 -2.746 100.254 1.00 38.67 N
ATOM 17 C5 G A1992 -3.230 -2.510 100.101 1.00 38.90 C
ATOM 18 C6 G A1992 -4.080 -1.591 100.787 1.00 39.25 C
ATOM 19 O6 G A1992 -3.760 -0.798 101.671 1.00 39.43 O
ATOM 20 N1 G A1992 -5.406 -1.657 100.354 1.00 39.42 N
ATOM 21 C2 G A1992 -5.816 -2.497 99.363 1.00 39.26 C
ATOM 22 N2 G A1992 -7.118 -2.427 99.085 1.00 39.48 N
ATOM 23 N3 G A1992 -5.038 -3.349 98.708 1.00 38.94 N
ATOM 24 C4 G A1992 -3.773 -3.325 99.130 1.00 38.77 C
ATOM 25 P U A1993 -1.295 -2.715 93.704 1.00 41.13 P
ATOM 26 OP1 U A1993 -1.187 -2.916 92.296 1.00 40.89 O
ATOM 27 OP2 U A1993 -0.290 -1.869 94.363 1.00 41.10 O
ATOM 28 O5' U A1993 -2.739 -2.192 94.059 1.00 41.48 O
TER
ATOM 1 O3' A B2119 -11.728 -5.325 89.074 1.00 50.35 O
ATOM 2 P A B2120 -11.761 -6.154 90.432 1.00 43.93 P
ATOM 3 OP1 A B2120 -11.012 -7.403 90.189 1.00 43.68 O
ATOM 4 OP2 A B2120 -13.196 -6.219 90.863 1.00 44.32 O
ATOM 5 O5' A B2120 -10.928 -5.243 91.425 1.00 43.91 O
ATOM 6 C5' A B2120 -10.001 -5.819 92.335 1.00 43.79 C
ATOM 7 C4' A B2120 -9.019 -4.795 92.797 1.00 43.69 C
ATOM 8 O4' A B2120 -9.711 -3.543 92.990 1.00 43.94 O
ATOM 9 C3' A B2120 -8.281 -5.127 94.095 1.00 43.69 C
ATOM 10 O3' A B2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 11 C2' A B2120 -8.787 -4.089 95.097 1.00 44.01 C
ATOM 12 O2' A B2120 -7.785 -3.608 95.986 1.00 43.96 O
ATOM 13 C1' A B2120 -9.320 -2.963 94.206 1.00 44.06 C
ATOM 14 N9 A B2120 -10.473 -2.278 94.784 1.00 44.44 N
ATOM 15 C8 A B2120 -11.783 -2.618 94.709 1.00 44.70 C
ATOM 16 N7 A B2120 -12.612 -1.844 95.361 1.00 45.05 N
ATOM 17 C5 A B2120 -11.757 -0.940 95.931 1.00 45.01 C
ATOM 18 C6 A B2120 -12.014 0.137 96.750 1.00 45.28 C
ATOM 19 N6 A B2120 -13.213 0.453 97.135 1.00 45.65 N
ATOM 20 N1 A B2120 -10.976 0.877 97.149 1.00 45.18 N
ATOM 21 C2 A B2120 -9.724 0.530 96.772 1.00 44.81 C
ATOM 22 N3 A B2120 -9.347 -0.460 95.982 1.00 44.51 N
ATOM 23 C4 A B2120 -10.437 -1.174 95.595 1.00 44.64 C
ATOM 24 P U B2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 25 OP1 U B2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 26 OP2 U B2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 27 O5' U B2121 -6.394 -5.859 91.701 1.00 57.01 O
TER
Atoms:
OP1: (3.588,-5.247,96.940)
OP2: (2.831,-4.034,99.010)
C3': (-1.420,-4.319,95.811)
C1': (-2.757,-5.101,97.596)
C5': (0.605,-5.780,96.468)
O6: (-3.760,-0.798,101.671)
O4': (-1.546,-5.817,97.604)
C8: (-1.622,-3.682,99.383)
C2: (-5.816,-2.497,99.363)
C6: (-4.080,-1.591,100.787)
C5: (-3.230,-2.510,100.101)
C4: (-3.773,-3.325,99.130)
P: (2.572,-5.038,97.967)
C4': (-0.887,-5.647,96.327)
C2': (-2.872,-4.425,96.222)
O2': (-3.523,-5.316,95.363)
N1: (-5.406,-1.657,100.354)
N2: (-7.118,-2.427,99.085)
N3: (-5.038,-3.349,98.708)
N7: (-1.875,-2.746,100.254)
N9: (-2.732,-4.105,98.686)
O5': (1.158,-4.788,97.298)
O3': (-1.247,-4.165,94.401)
OP2: (2.831,-4.034,99.010)
C3': (-1.420,-4.319,95.811)
C1': (-2.757,-5.101,97.596)
C5': (0.605,-5.780,96.468)
O6: (-3.760,-0.798,101.671)
O4': (-1.546,-5.817,97.604)
C8: (-1.622,-3.682,99.383)
C2: (-5.816,-2.497,99.363)
C6: (-4.080,-1.591,100.787)
C5: (-3.230,-2.510,100.101)
C4: (-3.773,-3.325,99.130)
P: (2.572,-5.038,97.967)
C4': (-0.887,-5.647,96.327)
C2': (-2.872,-4.425,96.222)
O2': (-3.523,-5.316,95.363)
N1: (-5.406,-1.657,100.354)
N2: (-7.118,-2.427,99.085)
N3: (-5.038,-3.349,98.708)
N7: (-1.875,-2.746,100.254)
N9: (-2.732,-4.105,98.686)
O5': (1.158,-4.788,97.298)
O3': (-1.247,-4.165,94.401)
OP1: (-11.012,-7.403,90.189)
OP2: (-13.196,-6.219,90.863)
C3': (-8.281,-5.127,94.095)
C1': (-9.320,-2.963,94.206)
C5': (-10.001,-5.819,92.335)
O4': (-9.711,-3.543,92.990)
C8: (-11.783,-2.618,94.709)
O2': (-7.785,-3.608,95.986)
C6: (-12.014,0.137,96.750)
C5: (-11.757,-0.940,95.931)
C4: (-10.437,-1.174,95.595)
P: (-11.761,-6.154,90.432)
C4': (-9.019,-4.795,92.797)
C2': (-8.787,-4.089,95.097)
C2: (-9.724,0.530,96.772)
N1: (-10.976,0.877,97.149)
N3: (-9.347,-0.460,95.982)
N6: (-13.213,0.453,97.135)
N7: (-12.612,-1.844,95.361)
N9: (-10.473,-2.278,94.784)
O5': (-10.928,-5.243,91.425)
O3': (-6.871,-4.966,93.921)
OP2: (-13.196,-6.219,90.863)
C3': (-8.281,-5.127,94.095)
C1': (-9.320,-2.963,94.206)
C5': (-10.001,-5.819,92.335)
O4': (-9.711,-3.543,92.990)
C8: (-11.783,-2.618,94.709)
O2': (-7.785,-3.608,95.986)
C6: (-12.014,0.137,96.750)
C5: (-11.757,-0.940,95.931)
C4: (-10.437,-1.174,95.595)
P: (-11.761,-6.154,90.432)
C4': (-9.019,-4.795,92.797)
C2': (-8.787,-4.089,95.097)
C2: (-9.724,0.530,96.772)
N1: (-10.976,0.877,97.149)
N3: (-9.347,-0.460,95.982)
N6: (-13.213,0.453,97.135)
N7: (-12.612,-1.844,95.361)
N9: (-10.473,-2.278,94.784)
O5': (-10.928,-5.243,91.425)
O3': (-6.871,-4.966,93.921)
Image (generated by PyMOL):