Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01080:01207
Extra
PDB:
ATOM 1 O3' U A1079 39.933 102.970 132.587 1.00 36.86 O
ATOM 2 P G A1080 39.824 103.586 131.108 1.00 35.68 P
ATOM 3 OP1 G A1080 40.888 102.918 130.322 1.00 38.95 O
ATOM 4 OP2 G A1080 39.788 105.061 131.184 1.00 32.70 O
ATOM 5 O5' G A1080 38.411 103.062 130.596 1.00 33.99 O
ATOM 6 C5' G A1080 38.089 101.659 130.655 1.00 32.50 C
ATOM 7 C4' G A1080 36.596 101.466 130.665 1.00 33.46 C
ATOM 8 O4' G A1080 36.040 102.134 131.827 1.00 35.71 O
ATOM 9 C3' G A1080 35.846 102.092 129.507 1.00 33.74 C
ATOM 10 O3' G A1080 35.900 101.276 128.345 1.00 35.44 O
ATOM 11 C2' G A1080 34.444 102.221 130.083 1.00 32.87 C
ATOM 12 O2' G A1080 33.770 100.986 130.139 1.00 30.76 O
ATOM 13 C1' G A1080 34.760 102.658 131.512 1.00 32.53 C
ATOM 14 N9 G A1080 34.822 104.111 131.621 1.00 32.34 N
ATOM 15 C8 G A1080 35.950 104.895 131.643 1.00 32.42 C
ATOM 16 N7 G A1080 35.683 106.173 131.707 1.00 33.38 N
ATOM 17 C5 G A1080 34.296 106.235 131.742 1.00 30.71 C
ATOM 18 C6 G A1080 33.433 107.350 131.817 1.00 30.45 C
ATOM 19 O6 G A1080 33.726 108.550 131.885 1.00 29.71 O
ATOM 20 N1 G A1080 32.098 106.962 131.816 1.00 32.12 N
ATOM 21 C2 G A1080 31.649 105.666 131.757 1.00 33.23 C
ATOM 22 N2 G A1080 30.315 105.495 131.755 1.00 32.38 N
ATOM 23 N3 G A1080 32.447 104.615 131.699 1.00 32.87 N
ATOM 24 C4 G A1080 33.749 104.971 131.694 1.00 32.30 C
ATOM 25 P U A1081 35.796 101.955 126.892 1.00 37.40 P
ATOM 26 OP1 U A1081 35.735 100.864 125.885 1.00 39.61 O
ATOM 27 OP2 U A1081 36.845 102.994 126.783 1.00 35.24 O
ATOM 28 O5' U A1081 34.374 102.668 126.909 1.00 37.42 O
TER
ATOM 1 O3' A B1206 25.492 104.297 129.905 1.00 35.69 O
ATOM 2 P A B1207 25.911 102.831 129.405 1.00 37.41 P
ATOM 3 OP1 A B1207 26.266 102.981 127.974 1.00 35.75 O
ATOM 4 OP2 A B1207 24.867 101.853 129.805 1.00 37.13 O
ATOM 5 O5' A B1207 27.243 102.504 130.214 1.00 37.65 O
ATOM 6 C5' A B1207 28.496 103.121 129.858 1.00 41.50 C
ATOM 7 C4' A B1207 29.630 102.483 130.621 1.00 42.15 C
ATOM 8 O4' A B1207 29.473 102.755 132.033 1.00 42.98 O
ATOM 9 C3' A B1207 29.695 100.970 130.522 1.00 42.09 C
ATOM 10 O3' A B1207 30.403 100.584 129.356 1.00 43.05 O
ATOM 11 C2' A B1207 30.411 100.582 131.807 1.00 41.68 C
ATOM 12 O2' A B1207 31.807 100.754 131.737 1.00 41.51 O
ATOM 13 C1' A B1207 29.848 101.615 132.785 1.00 42.81 C
ATOM 14 N9 A B1207 28.673 101.156 133.526 1.00 43.92 N
ATOM 15 C8 A B1207 27.351 101.440 133.280 1.00 42.86 C
ATOM 16 N7 A B1207 26.526 100.882 134.125 1.00 43.06 N
ATOM 17 C5 A B1207 27.357 100.180 134.987 1.00 44.77 C
ATOM 18 C6 A B1207 27.093 99.365 136.100 1.00 45.93 C
ATOM 19 N6 A B1207 25.866 99.110 136.555 1.00 45.89 N
ATOM 20 N1 A B1207 28.147 98.810 136.737 1.00 47.11 N
ATOM 21 C2 A B1207 29.379 99.062 136.276 1.00 46.25 C
ATOM 22 N3 A B1207 29.753 99.806 135.239 1.00 45.13 N
ATOM 23 C4 A B1207 28.682 100.342 134.630 1.00 44.10 C
ATOM 24 P U B1208 30.105 99.164 128.682 1.00 46.11 P
ATOM 25 OP1 U B1208 31.036 99.000 127.539 1.00 48.54 O
ATOM 26 OP2 U B1208 28.645 99.054 128.452 1.00 47.06 O
ATOM 27 O5' U B1208 30.491 98.115 129.814 1.00 45.37 O
TER
ATOM 2 P G A1080 39.824 103.586 131.108 1.00 35.68 P
ATOM 3 OP1 G A1080 40.888 102.918 130.322 1.00 38.95 O
ATOM 4 OP2 G A1080 39.788 105.061 131.184 1.00 32.70 O
ATOM 5 O5' G A1080 38.411 103.062 130.596 1.00 33.99 O
ATOM 6 C5' G A1080 38.089 101.659 130.655 1.00 32.50 C
ATOM 7 C4' G A1080 36.596 101.466 130.665 1.00 33.46 C
ATOM 8 O4' G A1080 36.040 102.134 131.827 1.00 35.71 O
ATOM 9 C3' G A1080 35.846 102.092 129.507 1.00 33.74 C
ATOM 10 O3' G A1080 35.900 101.276 128.345 1.00 35.44 O
ATOM 11 C2' G A1080 34.444 102.221 130.083 1.00 32.87 C
ATOM 12 O2' G A1080 33.770 100.986 130.139 1.00 30.76 O
ATOM 13 C1' G A1080 34.760 102.658 131.512 1.00 32.53 C
ATOM 14 N9 G A1080 34.822 104.111 131.621 1.00 32.34 N
ATOM 15 C8 G A1080 35.950 104.895 131.643 1.00 32.42 C
ATOM 16 N7 G A1080 35.683 106.173 131.707 1.00 33.38 N
ATOM 17 C5 G A1080 34.296 106.235 131.742 1.00 30.71 C
ATOM 18 C6 G A1080 33.433 107.350 131.817 1.00 30.45 C
ATOM 19 O6 G A1080 33.726 108.550 131.885 1.00 29.71 O
ATOM 20 N1 G A1080 32.098 106.962 131.816 1.00 32.12 N
ATOM 21 C2 G A1080 31.649 105.666 131.757 1.00 33.23 C
ATOM 22 N2 G A1080 30.315 105.495 131.755 1.00 32.38 N
ATOM 23 N3 G A1080 32.447 104.615 131.699 1.00 32.87 N
ATOM 24 C4 G A1080 33.749 104.971 131.694 1.00 32.30 C
ATOM 25 P U A1081 35.796 101.955 126.892 1.00 37.40 P
ATOM 26 OP1 U A1081 35.735 100.864 125.885 1.00 39.61 O
ATOM 27 OP2 U A1081 36.845 102.994 126.783 1.00 35.24 O
ATOM 28 O5' U A1081 34.374 102.668 126.909 1.00 37.42 O
TER
ATOM 1 O3' A B1206 25.492 104.297 129.905 1.00 35.69 O
ATOM 2 P A B1207 25.911 102.831 129.405 1.00 37.41 P
ATOM 3 OP1 A B1207 26.266 102.981 127.974 1.00 35.75 O
ATOM 4 OP2 A B1207 24.867 101.853 129.805 1.00 37.13 O
ATOM 5 O5' A B1207 27.243 102.504 130.214 1.00 37.65 O
ATOM 6 C5' A B1207 28.496 103.121 129.858 1.00 41.50 C
ATOM 7 C4' A B1207 29.630 102.483 130.621 1.00 42.15 C
ATOM 8 O4' A B1207 29.473 102.755 132.033 1.00 42.98 O
ATOM 9 C3' A B1207 29.695 100.970 130.522 1.00 42.09 C
ATOM 10 O3' A B1207 30.403 100.584 129.356 1.00 43.05 O
ATOM 11 C2' A B1207 30.411 100.582 131.807 1.00 41.68 C
ATOM 12 O2' A B1207 31.807 100.754 131.737 1.00 41.51 O
ATOM 13 C1' A B1207 29.848 101.615 132.785 1.00 42.81 C
ATOM 14 N9 A B1207 28.673 101.156 133.526 1.00 43.92 N
ATOM 15 C8 A B1207 27.351 101.440 133.280 1.00 42.86 C
ATOM 16 N7 A B1207 26.526 100.882 134.125 1.00 43.06 N
ATOM 17 C5 A B1207 27.357 100.180 134.987 1.00 44.77 C
ATOM 18 C6 A B1207 27.093 99.365 136.100 1.00 45.93 C
ATOM 19 N6 A B1207 25.866 99.110 136.555 1.00 45.89 N
ATOM 20 N1 A B1207 28.147 98.810 136.737 1.00 47.11 N
ATOM 21 C2 A B1207 29.379 99.062 136.276 1.00 46.25 C
ATOM 22 N3 A B1207 29.753 99.806 135.239 1.00 45.13 N
ATOM 23 C4 A B1207 28.682 100.342 134.630 1.00 44.10 C
ATOM 24 P U B1208 30.105 99.164 128.682 1.00 46.11 P
ATOM 25 OP1 U B1208 31.036 99.000 127.539 1.00 48.54 O
ATOM 26 OP2 U B1208 28.645 99.054 128.452 1.00 47.06 O
ATOM 27 O5' U B1208 30.491 98.115 129.814 1.00 45.37 O
TER
Atoms:
OP1: (40.888,102.918,130.322)
OP2: (39.788,105.061,131.184)
C3': (35.846,102.092,129.507)
C1': (34.760,102.658,131.512)
C5': (38.089,101.659,130.655)
O6: (33.726,108.550,131.885)
O4': (36.040,102.134,131.827)
C8: (35.950,104.895,131.643)
C2: (31.649,105.666,131.757)
C6: (33.433,107.350,131.817)
C5: (34.296,106.235,131.742)
C4: (33.749,104.971,131.694)
P: (39.824,103.586,131.108)
C4': (36.596,101.466,130.665)
C2': (34.444,102.221,130.083)
O2': (33.770,100.986,130.139)
N1: (32.098,106.962,131.816)
N2: (30.315,105.495,131.755)
N3: (32.447,104.615,131.699)
N7: (35.683,106.173,131.707)
N9: (34.822,104.111,131.621)
O5': (38.411,103.062,130.596)
O3': (35.900,101.276,128.345)
OP2: (39.788,105.061,131.184)
C3': (35.846,102.092,129.507)
C1': (34.760,102.658,131.512)
C5': (38.089,101.659,130.655)
O6: (33.726,108.550,131.885)
O4': (36.040,102.134,131.827)
C8: (35.950,104.895,131.643)
C2: (31.649,105.666,131.757)
C6: (33.433,107.350,131.817)
C5: (34.296,106.235,131.742)
C4: (33.749,104.971,131.694)
P: (39.824,103.586,131.108)
C4': (36.596,101.466,130.665)
C2': (34.444,102.221,130.083)
O2': (33.770,100.986,130.139)
N1: (32.098,106.962,131.816)
N2: (30.315,105.495,131.755)
N3: (32.447,104.615,131.699)
N7: (35.683,106.173,131.707)
N9: (34.822,104.111,131.621)
O5': (38.411,103.062,130.596)
O3': (35.900,101.276,128.345)
OP1: (26.266,102.981,127.974)
OP2: (24.867,101.853,129.805)
C3': (29.695,100.970,130.522)
C1': (29.848,101.615,132.785)
C5': (28.496,103.121,129.858)
O4': (29.473,102.755,132.033)
C8: (27.351,101.440,133.280)
O2': (31.807,100.754,131.737)
C6: (27.093,99.365,136.100)
C5: (27.357,100.180,134.987)
C4: (28.682,100.342,134.630)
P: (25.911,102.831,129.405)
C4': (29.630,102.483,130.621)
C2': (30.411,100.582,131.807)
C2: (29.379,99.062,136.276)
N1: (28.147,98.810,136.737)
N3: (29.753,99.806,135.239)
N6: (25.866,99.110,136.555)
N7: (26.526,100.882,134.125)
N9: (28.673,101.156,133.526)
O5': (27.243,102.504,130.214)
O3': (30.403,100.584,129.356)
OP2: (24.867,101.853,129.805)
C3': (29.695,100.970,130.522)
C1': (29.848,101.615,132.785)
C5': (28.496,103.121,129.858)
O4': (29.473,102.755,132.033)
C8: (27.351,101.440,133.280)
O2': (31.807,100.754,131.737)
C6: (27.093,99.365,136.100)
C5: (27.357,100.180,134.987)
C4: (28.682,100.342,134.630)
P: (25.911,102.831,129.405)
C4': (29.630,102.483,130.621)
C2': (30.411,100.582,131.807)
C2: (29.379,99.062,136.276)
N1: (28.147,98.810,136.737)
N3: (29.753,99.806,135.239)
N6: (25.866,99.110,136.555)
N7: (26.526,100.882,134.125)
N9: (28.673,101.156,133.526)
O5': (27.243,102.504,130.214)
O3': (30.403,100.584,129.356)
Image (generated by PyMOL):