Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:054:060
Extra
PDB:
ATOM 1 O3' U A 53 50.989 148.892 37.879 1.00 43.56 O
ATOM 2 P G A 54 52.307 148.985 36.964 1.00 45.92 P
ATOM 3 OP1 G A 54 52.401 147.732 36.169 1.00 45.74 O
ATOM 4 OP2 G A 54 53.450 149.394 37.813 1.00 44.72 O
ATOM 5 O5' G A 54 51.984 150.183 35.963 1.00 46.85 O
ATOM 6 C5' G A 54 50.874 150.107 35.052 1.00 44.15 C
ATOM 7 C4' G A 54 50.729 151.406 34.294 1.00 46.89 C
ATOM 8 O4' G A 54 50.397 152.485 35.208 1.00 48.74 O
ATOM 9 C3' G A 54 51.979 151.907 33.596 1.00 46.69 C
ATOM 10 O3' G A 54 52.197 151.257 32.359 1.00 45.42 O
ATOM 11 C2' G A 54 51.677 153.386 33.420 1.00 48.00 C
ATOM 12 O2' G A 54 50.792 153.644 32.351 1.00 49.63 O
ATOM 13 C1' G A 54 50.974 153.698 34.740 1.00 49.52 C
ATOM 14 N9 G A 54 51.899 154.196 35.754 1.00 51.58 N
ATOM 15 C8 G A 54 52.431 153.495 36.808 1.00 51.61 C
ATOM 16 N7 G A 54 53.219 154.216 37.556 1.00 52.85 N
ATOM 17 C5 G A 54 53.211 155.468 36.959 1.00 52.90 C
ATOM 18 C6 G A 54 53.880 156.662 37.324 1.00 54.21 C
ATOM 19 O6 G A 54 54.642 156.858 38.281 1.00 54.12 O
ATOM 20 N1 G A 54 53.593 157.698 36.439 1.00 53.84 N
ATOM 21 C2 G A 54 52.776 157.597 35.345 1.00 50.94 C
ATOM 22 N2 G A 54 52.634 158.704 34.617 1.00 47.92 N
ATOM 23 N3 G A 54 52.147 156.490 34.995 1.00 51.58 N
ATOM 24 C4 G A 54 52.406 155.472 35.842 1.00 51.88 C
ATOM 25 P C A 55 53.697 150.971 31.880 1.00 45.14 P
ATOM 26 OP1 C A 55 53.631 150.153 30.646 1.00 46.72 O
ATOM 27 OP2 C A 55 54.460 150.473 33.052 1.00 44.56 O
ATOM 28 O5' C A 55 54.256 152.415 31.501 1.00 45.65 O
TER
ATOM 1 O3' A B 59 53.551 161.244 31.229 1.00 42.31 O
ATOM 2 P A B 60 52.551 161.513 32.474 1.00 42.03 P
ATOM 3 OP1 A B 60 51.845 162.804 32.271 1.00 43.71 O
ATOM 4 OP2 A B 60 53.292 161.294 33.731 1.00 44.97 O
ATOM 5 O5' A B 60 51.470 160.346 32.356 1.00 43.18 O
ATOM 6 C5' A B 60 50.060 160.610 32.537 1.00 45.22 C
ATOM 7 C4' A B 60 49.263 159.318 32.489 1.00 47.34 C
ATOM 8 O4' A B 60 49.735 158.412 33.522 1.00 45.72 O
ATOM 9 C3' A B 60 47.767 159.482 32.740 1.00 48.49 C
ATOM 10 O3' A B 60 47.053 158.440 32.089 1.00 52.96 O
ATOM 11 C2' A B 60 47.661 159.264 34.243 1.00 48.81 C
ATOM 12 O2' A B 60 46.377 158.823 34.631 1.00 49.42 O
ATOM 13 C1' A B 60 48.698 158.164 34.455 1.00 47.94 C
ATOM 14 N9 A B 60 49.300 158.155 35.785 1.00 49.40 N
ATOM 15 C8 A B 60 49.322 157.125 36.687 1.00 50.13 C
ATOM 16 N7 A B 60 50.019 157.383 37.766 1.00 50.98 N
ATOM 17 C5 A B 60 50.473 158.678 37.569 1.00 51.33 C
ATOM 18 C6 A B 60 51.285 159.525 38.341 1.00 51.45 C
ATOM 19 N6 A B 60 51.828 159.172 39.507 1.00 52.38 N
ATOM 20 N1 A B 60 51.532 160.762 37.862 1.00 51.83 N
ATOM 21 C2 A B 60 51.006 161.110 36.682 1.00 51.57 C
ATOM 22 N3 A B 60 50.242 160.401 35.860 1.00 50.31 N
ATOM 23 C4 A B 60 50.012 159.178 36.366 1.00 50.70 C
ATOM 24 P G B 61 46.507 158.655 30.596 1.00 56.50 P
ATOM 25 OP1 G B 61 45.924 160.023 30.487 1.00 55.68 O
ATOM 26 OP2 G B 61 45.673 157.466 30.249 1.00 56.01 O
ATOM 27 O5' G B 61 47.842 158.606 29.737 1.00 54.96 O
TER
ATOM 2 P G A 54 52.307 148.985 36.964 1.00 45.92 P
ATOM 3 OP1 G A 54 52.401 147.732 36.169 1.00 45.74 O
ATOM 4 OP2 G A 54 53.450 149.394 37.813 1.00 44.72 O
ATOM 5 O5' G A 54 51.984 150.183 35.963 1.00 46.85 O
ATOM 6 C5' G A 54 50.874 150.107 35.052 1.00 44.15 C
ATOM 7 C4' G A 54 50.729 151.406 34.294 1.00 46.89 C
ATOM 8 O4' G A 54 50.397 152.485 35.208 1.00 48.74 O
ATOM 9 C3' G A 54 51.979 151.907 33.596 1.00 46.69 C
ATOM 10 O3' G A 54 52.197 151.257 32.359 1.00 45.42 O
ATOM 11 C2' G A 54 51.677 153.386 33.420 1.00 48.00 C
ATOM 12 O2' G A 54 50.792 153.644 32.351 1.00 49.63 O
ATOM 13 C1' G A 54 50.974 153.698 34.740 1.00 49.52 C
ATOM 14 N9 G A 54 51.899 154.196 35.754 1.00 51.58 N
ATOM 15 C8 G A 54 52.431 153.495 36.808 1.00 51.61 C
ATOM 16 N7 G A 54 53.219 154.216 37.556 1.00 52.85 N
ATOM 17 C5 G A 54 53.211 155.468 36.959 1.00 52.90 C
ATOM 18 C6 G A 54 53.880 156.662 37.324 1.00 54.21 C
ATOM 19 O6 G A 54 54.642 156.858 38.281 1.00 54.12 O
ATOM 20 N1 G A 54 53.593 157.698 36.439 1.00 53.84 N
ATOM 21 C2 G A 54 52.776 157.597 35.345 1.00 50.94 C
ATOM 22 N2 G A 54 52.634 158.704 34.617 1.00 47.92 N
ATOM 23 N3 G A 54 52.147 156.490 34.995 1.00 51.58 N
ATOM 24 C4 G A 54 52.406 155.472 35.842 1.00 51.88 C
ATOM 25 P C A 55 53.697 150.971 31.880 1.00 45.14 P
ATOM 26 OP1 C A 55 53.631 150.153 30.646 1.00 46.72 O
ATOM 27 OP2 C A 55 54.460 150.473 33.052 1.00 44.56 O
ATOM 28 O5' C A 55 54.256 152.415 31.501 1.00 45.65 O
TER
ATOM 1 O3' A B 59 53.551 161.244 31.229 1.00 42.31 O
ATOM 2 P A B 60 52.551 161.513 32.474 1.00 42.03 P
ATOM 3 OP1 A B 60 51.845 162.804 32.271 1.00 43.71 O
ATOM 4 OP2 A B 60 53.292 161.294 33.731 1.00 44.97 O
ATOM 5 O5' A B 60 51.470 160.346 32.356 1.00 43.18 O
ATOM 6 C5' A B 60 50.060 160.610 32.537 1.00 45.22 C
ATOM 7 C4' A B 60 49.263 159.318 32.489 1.00 47.34 C
ATOM 8 O4' A B 60 49.735 158.412 33.522 1.00 45.72 O
ATOM 9 C3' A B 60 47.767 159.482 32.740 1.00 48.49 C
ATOM 10 O3' A B 60 47.053 158.440 32.089 1.00 52.96 O
ATOM 11 C2' A B 60 47.661 159.264 34.243 1.00 48.81 C
ATOM 12 O2' A B 60 46.377 158.823 34.631 1.00 49.42 O
ATOM 13 C1' A B 60 48.698 158.164 34.455 1.00 47.94 C
ATOM 14 N9 A B 60 49.300 158.155 35.785 1.00 49.40 N
ATOM 15 C8 A B 60 49.322 157.125 36.687 1.00 50.13 C
ATOM 16 N7 A B 60 50.019 157.383 37.766 1.00 50.98 N
ATOM 17 C5 A B 60 50.473 158.678 37.569 1.00 51.33 C
ATOM 18 C6 A B 60 51.285 159.525 38.341 1.00 51.45 C
ATOM 19 N6 A B 60 51.828 159.172 39.507 1.00 52.38 N
ATOM 20 N1 A B 60 51.532 160.762 37.862 1.00 51.83 N
ATOM 21 C2 A B 60 51.006 161.110 36.682 1.00 51.57 C
ATOM 22 N3 A B 60 50.242 160.401 35.860 1.00 50.31 N
ATOM 23 C4 A B 60 50.012 159.178 36.366 1.00 50.70 C
ATOM 24 P G B 61 46.507 158.655 30.596 1.00 56.50 P
ATOM 25 OP1 G B 61 45.924 160.023 30.487 1.00 55.68 O
ATOM 26 OP2 G B 61 45.673 157.466 30.249 1.00 56.01 O
ATOM 27 O5' G B 61 47.842 158.606 29.737 1.00 54.96 O
TER
Atoms:
OP1: (52.401,147.732,36.169)
OP2: (53.450,149.394,37.813)
C3': (51.979,151.907,33.596)
C1': (50.974,153.698,34.740)
C5': (50.874,150.107,35.052)
O6: (54.642,156.858,38.281)
O4': (50.397,152.485,35.208)
C8: (52.431,153.495,36.808)
C2: (52.776,157.597,35.345)
C6: (53.880,156.662,37.324)
C5: (53.211,155.468,36.959)
C4: (52.406,155.472,35.842)
P: (52.307,148.985,36.964)
C4': (50.729,151.406,34.294)
C2': (51.677,153.386,33.420)
O2': (50.792,153.644,32.351)
N1: (53.593,157.698,36.439)
N2: (52.634,158.704,34.617)
N3: (52.147,156.490,34.995)
N7: (53.219,154.216,37.556)
N9: (51.899,154.196,35.754)
O5': (51.984,150.183,35.963)
O3': (52.197,151.257,32.359)
OP2: (53.450,149.394,37.813)
C3': (51.979,151.907,33.596)
C1': (50.974,153.698,34.740)
C5': (50.874,150.107,35.052)
O6: (54.642,156.858,38.281)
O4': (50.397,152.485,35.208)
C8: (52.431,153.495,36.808)
C2: (52.776,157.597,35.345)
C6: (53.880,156.662,37.324)
C5: (53.211,155.468,36.959)
C4: (52.406,155.472,35.842)
P: (52.307,148.985,36.964)
C4': (50.729,151.406,34.294)
C2': (51.677,153.386,33.420)
O2': (50.792,153.644,32.351)
N1: (53.593,157.698,36.439)
N2: (52.634,158.704,34.617)
N3: (52.147,156.490,34.995)
N7: (53.219,154.216,37.556)
N9: (51.899,154.196,35.754)
O5': (51.984,150.183,35.963)
O3': (52.197,151.257,32.359)
OP1: (51.845,162.804,32.271)
OP2: (53.292,161.294,33.731)
C3': (47.767,159.482,32.740)
C1': (48.698,158.164,34.455)
C5': (50.060,160.610,32.537)
O4': (49.735,158.412,33.522)
C8: (49.322,157.125,36.687)
O2': (46.377,158.823,34.631)
C6: (51.285,159.525,38.341)
C5: (50.473,158.678,37.569)
C4: (50.012,159.178,36.366)
P: (52.551,161.513,32.474)
C4': (49.263,159.318,32.489)
C2': (47.661,159.264,34.243)
C2: (51.006,161.110,36.682)
N1: (51.532,160.762,37.862)
N3: (50.242,160.401,35.860)
N6: (51.828,159.172,39.507)
N7: (50.019,157.383,37.766)
N9: (49.300,158.155,35.785)
O5': (51.470,160.346,32.356)
O3': (47.053,158.440,32.089)
OP2: (53.292,161.294,33.731)
C3': (47.767,159.482,32.740)
C1': (48.698,158.164,34.455)
C5': (50.060,160.610,32.537)
O4': (49.735,158.412,33.522)
C8: (49.322,157.125,36.687)
O2': (46.377,158.823,34.631)
C6: (51.285,159.525,38.341)
C5: (50.473,158.678,37.569)
C4: (50.012,159.178,36.366)
P: (52.551,161.513,32.474)
C4': (49.263,159.318,32.489)
C2': (47.661,159.264,34.243)
C2: (51.006,161.110,36.682)
N1: (51.532,160.762,37.862)
N3: (50.242,160.401,35.860)
N6: (51.828,159.172,39.507)
N7: (50.019,157.383,37.766)
N9: (49.300,158.155,35.785)
O5': (51.470,160.346,32.356)
O3': (47.053,158.440,32.089)
Image (generated by PyMOL):