Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:054:060
Extra
PDB:
ATOM 1 O3' U A 53 51.121 148.816 37.851 1.00 46.88 O
ATOM 2 P G A 54 52.524 148.875 37.061 1.00 48.78 P
ATOM 3 OP1 G A 54 52.750 147.582 36.369 1.00 46.99 O
ATOM 4 OP2 G A 54 53.556 149.387 38.000 1.00 47.99 O
ATOM 5 O5' G A 54 52.267 149.979 35.943 1.00 49.45 O
ATOM 6 C5' G A 54 51.113 149.902 35.091 1.00 48.68 C
ATOM 7 C4' G A 54 50.880 151.220 34.395 1.00 50.20 C
ATOM 8 O4' G A 54 50.541 152.256 35.355 1.00 51.96 O
ATOM 9 C3' G A 54 52.073 151.793 33.661 1.00 49.35 C
ATOM 10 O3' G A 54 52.248 151.168 32.406 1.00 48.18 O
ATOM 11 C2' G A 54 51.691 153.260 33.537 1.00 50.58 C
ATOM 12 O2' G A 54 50.737 153.488 32.520 1.00 49.91 O
ATOM 13 C1' G A 54 51.034 153.507 34.895 1.00 52.09 C
ATOM 14 N9 G A 54 51.967 154.031 35.889 1.00 54.21 N
ATOM 15 C8 G A 54 52.511 153.351 36.951 1.00 55.48 C
ATOM 16 N7 G A 54 53.307 154.086 37.677 1.00 56.49 N
ATOM 17 C5 G A 54 53.291 155.326 37.057 1.00 56.31 C
ATOM 18 C6 G A 54 53.967 156.522 37.391 1.00 57.16 C
ATOM 19 O6 G A 54 54.741 156.730 38.332 1.00 57.74 O
ATOM 20 N1 G A 54 53.672 157.543 36.494 1.00 56.27 N
ATOM 21 C2 G A 54 52.840 157.427 35.414 1.00 54.60 C
ATOM 22 N2 G A 54 52.694 158.523 34.672 1.00 52.73 N
ATOM 23 N3 G A 54 52.202 156.316 35.089 1.00 55.44 N
ATOM 24 C4 G A 54 52.472 155.311 35.950 1.00 55.22 C
ATOM 25 P C A 55 53.727 150.838 31.894 1.00 47.76 P
ATOM 26 OP1 C A 55 53.590 150.018 30.668 1.00 49.41 O
ATOM 27 OP2 C A 55 54.506 150.316 33.039 1.00 47.77 O
ATOM 28 O5' C A 55 54.318 152.261 31.489 1.00 49.34 O
TER
ATOM 1 O3' A B 59 53.610 161.128 31.264 1.00 43.65 O
ATOM 2 P A B 60 52.613 161.370 32.520 1.00 42.88 P
ATOM 3 OP1 A B 60 51.896 162.654 32.347 1.00 44.37 O
ATOM 4 OP2 A B 60 53.357 161.128 33.768 1.00 44.97 O
ATOM 5 O5' A B 60 51.548 160.193 32.387 1.00 44.18 O
ATOM 6 C5' A B 60 50.147 160.428 32.606 1.00 46.51 C
ATOM 7 C4' A B 60 49.377 159.125 32.539 1.00 49.47 C
ATOM 8 O4' A B 60 49.863 158.220 33.564 1.00 49.58 O
ATOM 9 C3' A B 60 47.880 159.261 32.787 1.00 51.69 C
ATOM 10 O3' A B 60 47.185 158.229 32.108 1.00 54.83 O
ATOM 11 C2' A B 60 47.770 159.027 34.286 1.00 51.89 C
ATOM 12 O2' A B 60 46.487 158.561 34.648 1.00 53.56 O
ATOM 13 C1' A B 60 48.833 157.950 34.496 1.00 51.68 C
ATOM 14 N9 A B 60 49.436 157.952 35.828 1.00 52.71 N
ATOM 15 C8 A B 60 49.456 156.925 36.733 1.00 53.99 C
ATOM 16 N7 A B 60 50.143 157.189 37.816 1.00 55.21 N
ATOM 17 C5 A B 60 50.595 158.486 37.618 1.00 54.67 C
ATOM 18 C6 A B 60 51.398 159.338 38.393 1.00 54.31 C
ATOM 19 N6 A B 60 51.933 158.990 39.566 1.00 53.53 N
ATOM 20 N1 A B 60 51.645 160.574 37.913 1.00 53.93 N
ATOM 21 C2 A B 60 51.128 160.914 36.730 1.00 53.38 C
ATOM 22 N3 A B 60 50.374 160.200 35.904 1.00 53.24 N
ATOM 23 C4 A B 60 50.143 158.979 36.410 1.00 53.46 C
ATOM 24 P G B 61 46.713 158.450 30.591 1.00 57.62 P
ATOM 25 OP1 G B 61 46.127 159.817 30.464 1.00 56.01 O
ATOM 26 OP2 G B 61 45.907 157.258 30.195 1.00 57.38 O
ATOM 27 O5' G B 61 48.083 158.420 29.788 1.00 54.97 O
TER
ATOM 2 P G A 54 52.524 148.875 37.061 1.00 48.78 P
ATOM 3 OP1 G A 54 52.750 147.582 36.369 1.00 46.99 O
ATOM 4 OP2 G A 54 53.556 149.387 38.000 1.00 47.99 O
ATOM 5 O5' G A 54 52.267 149.979 35.943 1.00 49.45 O
ATOM 6 C5' G A 54 51.113 149.902 35.091 1.00 48.68 C
ATOM 7 C4' G A 54 50.880 151.220 34.395 1.00 50.20 C
ATOM 8 O4' G A 54 50.541 152.256 35.355 1.00 51.96 O
ATOM 9 C3' G A 54 52.073 151.793 33.661 1.00 49.35 C
ATOM 10 O3' G A 54 52.248 151.168 32.406 1.00 48.18 O
ATOM 11 C2' G A 54 51.691 153.260 33.537 1.00 50.58 C
ATOM 12 O2' G A 54 50.737 153.488 32.520 1.00 49.91 O
ATOM 13 C1' G A 54 51.034 153.507 34.895 1.00 52.09 C
ATOM 14 N9 G A 54 51.967 154.031 35.889 1.00 54.21 N
ATOM 15 C8 G A 54 52.511 153.351 36.951 1.00 55.48 C
ATOM 16 N7 G A 54 53.307 154.086 37.677 1.00 56.49 N
ATOM 17 C5 G A 54 53.291 155.326 37.057 1.00 56.31 C
ATOM 18 C6 G A 54 53.967 156.522 37.391 1.00 57.16 C
ATOM 19 O6 G A 54 54.741 156.730 38.332 1.00 57.74 O
ATOM 20 N1 G A 54 53.672 157.543 36.494 1.00 56.27 N
ATOM 21 C2 G A 54 52.840 157.427 35.414 1.00 54.60 C
ATOM 22 N2 G A 54 52.694 158.523 34.672 1.00 52.73 N
ATOM 23 N3 G A 54 52.202 156.316 35.089 1.00 55.44 N
ATOM 24 C4 G A 54 52.472 155.311 35.950 1.00 55.22 C
ATOM 25 P C A 55 53.727 150.838 31.894 1.00 47.76 P
ATOM 26 OP1 C A 55 53.590 150.018 30.668 1.00 49.41 O
ATOM 27 OP2 C A 55 54.506 150.316 33.039 1.00 47.77 O
ATOM 28 O5' C A 55 54.318 152.261 31.489 1.00 49.34 O
TER
ATOM 1 O3' A B 59 53.610 161.128 31.264 1.00 43.65 O
ATOM 2 P A B 60 52.613 161.370 32.520 1.00 42.88 P
ATOM 3 OP1 A B 60 51.896 162.654 32.347 1.00 44.37 O
ATOM 4 OP2 A B 60 53.357 161.128 33.768 1.00 44.97 O
ATOM 5 O5' A B 60 51.548 160.193 32.387 1.00 44.18 O
ATOM 6 C5' A B 60 50.147 160.428 32.606 1.00 46.51 C
ATOM 7 C4' A B 60 49.377 159.125 32.539 1.00 49.47 C
ATOM 8 O4' A B 60 49.863 158.220 33.564 1.00 49.58 O
ATOM 9 C3' A B 60 47.880 159.261 32.787 1.00 51.69 C
ATOM 10 O3' A B 60 47.185 158.229 32.108 1.00 54.83 O
ATOM 11 C2' A B 60 47.770 159.027 34.286 1.00 51.89 C
ATOM 12 O2' A B 60 46.487 158.561 34.648 1.00 53.56 O
ATOM 13 C1' A B 60 48.833 157.950 34.496 1.00 51.68 C
ATOM 14 N9 A B 60 49.436 157.952 35.828 1.00 52.71 N
ATOM 15 C8 A B 60 49.456 156.925 36.733 1.00 53.99 C
ATOM 16 N7 A B 60 50.143 157.189 37.816 1.00 55.21 N
ATOM 17 C5 A B 60 50.595 158.486 37.618 1.00 54.67 C
ATOM 18 C6 A B 60 51.398 159.338 38.393 1.00 54.31 C
ATOM 19 N6 A B 60 51.933 158.990 39.566 1.00 53.53 N
ATOM 20 N1 A B 60 51.645 160.574 37.913 1.00 53.93 N
ATOM 21 C2 A B 60 51.128 160.914 36.730 1.00 53.38 C
ATOM 22 N3 A B 60 50.374 160.200 35.904 1.00 53.24 N
ATOM 23 C4 A B 60 50.143 158.979 36.410 1.00 53.46 C
ATOM 24 P G B 61 46.713 158.450 30.591 1.00 57.62 P
ATOM 25 OP1 G B 61 46.127 159.817 30.464 1.00 56.01 O
ATOM 26 OP2 G B 61 45.907 157.258 30.195 1.00 57.38 O
ATOM 27 O5' G B 61 48.083 158.420 29.788 1.00 54.97 O
TER
Atoms:
OP1: (52.750,147.582,36.369)
OP2: (53.556,149.387,38.000)
C3': (52.073,151.793,33.661)
C1': (51.034,153.507,34.895)
C5': (51.113,149.902,35.091)
O6: (54.741,156.730,38.332)
O4': (50.541,152.256,35.355)
C8: (52.511,153.351,36.951)
C2: (52.840,157.427,35.414)
C6: (53.967,156.522,37.391)
C5: (53.291,155.326,37.057)
C4: (52.472,155.311,35.950)
P: (52.524,148.875,37.061)
C4': (50.880,151.220,34.395)
C2': (51.691,153.260,33.537)
O2': (50.737,153.488,32.520)
N1: (53.672,157.543,36.494)
N2: (52.694,158.523,34.672)
N3: (52.202,156.316,35.089)
N7: (53.307,154.086,37.677)
N9: (51.967,154.031,35.889)
O5': (52.267,149.979,35.943)
O3': (52.248,151.168,32.406)
OP2: (53.556,149.387,38.000)
C3': (52.073,151.793,33.661)
C1': (51.034,153.507,34.895)
C5': (51.113,149.902,35.091)
O6: (54.741,156.730,38.332)
O4': (50.541,152.256,35.355)
C8: (52.511,153.351,36.951)
C2: (52.840,157.427,35.414)
C6: (53.967,156.522,37.391)
C5: (53.291,155.326,37.057)
C4: (52.472,155.311,35.950)
P: (52.524,148.875,37.061)
C4': (50.880,151.220,34.395)
C2': (51.691,153.260,33.537)
O2': (50.737,153.488,32.520)
N1: (53.672,157.543,36.494)
N2: (52.694,158.523,34.672)
N3: (52.202,156.316,35.089)
N7: (53.307,154.086,37.677)
N9: (51.967,154.031,35.889)
O5': (52.267,149.979,35.943)
O3': (52.248,151.168,32.406)
OP1: (51.896,162.654,32.347)
OP2: (53.357,161.128,33.768)
C3': (47.880,159.261,32.787)
C1': (48.833,157.950,34.496)
C5': (50.147,160.428,32.606)
O4': (49.863,158.220,33.564)
C8: (49.456,156.925,36.733)
O2': (46.487,158.561,34.648)
C6: (51.398,159.338,38.393)
C5: (50.595,158.486,37.618)
C4: (50.143,158.979,36.410)
P: (52.613,161.370,32.520)
C4': (49.377,159.125,32.539)
C2': (47.770,159.027,34.286)
C2: (51.128,160.914,36.730)
N1: (51.645,160.574,37.913)
N3: (50.374,160.200,35.904)
N6: (51.933,158.990,39.566)
N7: (50.143,157.189,37.816)
N9: (49.436,157.952,35.828)
O5': (51.548,160.193,32.387)
O3': (47.185,158.229,32.108)
OP2: (53.357,161.128,33.768)
C3': (47.880,159.261,32.787)
C1': (48.833,157.950,34.496)
C5': (50.147,160.428,32.606)
O4': (49.863,158.220,33.564)
C8: (49.456,156.925,36.733)
O2': (46.487,158.561,34.648)
C6: (51.398,159.338,38.393)
C5: (50.595,158.486,37.618)
C4: (50.143,158.979,36.410)
P: (52.613,161.370,32.520)
C4': (49.377,159.125,32.539)
C2': (47.770,159.027,34.286)
C2: (51.128,160.914,36.730)
N1: (51.645,160.574,37.913)
N3: (50.374,160.200,35.904)
N6: (51.933,158.990,39.566)
N7: (50.143,157.189,37.816)
N9: (49.436,157.952,35.828)
O5': (51.548,160.193,32.387)
O3': (47.185,158.229,32.108)
Image (generated by PyMOL):