ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:01219:01047

Extra

PDB:
ATOM 1 O3' A A1218 17.553 102.452 101.867 1.00 41.08 O
ATOM 2 P G A1219 16.262 102.137 100.971 1.00 42.07 P
ATOM 3 OP1 G A1219 15.564 103.430 100.759 1.00 42.28 O
ATOM 4 OP2 G A1219 15.525 100.992 101.588 1.00 40.49 O
ATOM 5 O5' G A1219 16.883 101.666 99.584 1.00 38.71 O
ATOM 6 C5' G A1219 16.123 100.871 98.662 1.00 38.15 C
ATOM 7 C4' G A1219 17.053 100.185 97.702 1.00 38.00 C
ATOM 8 O4' G A1219 17.842 101.197 97.021 1.00 40.57 O
ATOM 9 C3' G A1219 18.062 99.252 98.352 1.00 38.83 C
ATOM 10 O3' G A1219 18.401 98.258 97.397 1.00 36.94 O
ATOM 11 C2' G A1219 19.254 100.177 98.585 1.00 41.17 C
ATOM 12 O2' G A1219 20.482 99.484 98.707 1.00 42.23 O
ATOM 13 C1' G A1219 19.214 101.006 97.306 1.00 41.42 C
ATOM 14 N9 G A1219 19.868 102.312 97.336 1.00 41.79 N
ATOM 15 C8 G A1219 19.636 103.351 98.205 1.00 41.20 C
ATOM 16 N7 G A1219 20.342 104.416 97.930 1.00 41.49 N
ATOM 17 C5 G A1219 21.097 104.053 96.820 1.00 42.90 C
ATOM 18 C6 G A1219 22.046 104.801 96.054 1.00 43.66 C
ATOM 19 O6 G A1219 22.413 105.975 96.204 1.00 44.87 O
ATOM 20 N1 G A1219 22.577 104.044 95.017 1.00 42.86 N
ATOM 21 C2 G A1219 22.245 102.744 94.741 1.00 43.92 C
ATOM 22 N2 G A1219 22.875 102.189 93.698 1.00 45.38 N
ATOM 23 N3 G A1219 21.363 102.038 95.434 1.00 43.39 N
ATOM 24 C4 G A1219 20.830 102.752 96.453 1.00 42.98 C
ATOM 25 P A A1220 17.457 96.984 97.212 1.00 37.15 P
ATOM 26 OP1 A A1220 17.557 96.521 95.799 1.00 35.09 O
ATOM 27 OP2 A A1220 16.139 97.356 97.777 1.00 35.29 O
ATOM 28 O5' A A1220 18.117 95.872 98.137 1.00 37.38 O
TER

ATOM 1 O3' G B1046 23.985 94.739 95.050 1.00 39.58 O
ATOM 2 P A B1047 22.589 95.195 95.689 1.00 40.68 P
ATOM 3 OP1 A B1047 22.777 95.234 97.153 1.00 38.32 O
ATOM 4 OP2 A B1047 21.518 94.356 95.097 1.00 38.55 O
ATOM 5 O5' A B1047 22.432 96.689 95.174 1.00 39.89 O
ATOM 6 C5' A B1047 21.158 97.335 95.102 1.00 39.14 C
ATOM 7 C4' A B1047 21.089 98.159 93.844 1.00 39.58 C
ATOM 8 O4' A B1047 22.335 98.902 93.740 1.00 40.87 O
ATOM 9 C3' A B1047 20.981 97.359 92.550 1.00 39.99 C
ATOM 10 O3' A B1047 20.296 98.137 91.579 1.00 41.98 O
ATOM 11 C2' A B1047 22.431 97.200 92.130 1.00 39.70 C
ATOM 12 O2' A B1047 22.582 97.017 90.741 1.00 39.96 O
ATOM 13 C1' A B1047 23.005 98.546 92.549 1.00 40.49 C
ATOM 14 N9 A B1047 24.449 98.508 92.795 1.00 41.19 N
ATOM 15 C8 A B1047 25.191 97.521 93.401 1.00 41.34 C
ATOM 16 N7 A B1047 26.482 97.744 93.385 1.00 40.32 N
ATOM 17 C5 A B1047 26.601 98.965 92.739 1.00 40.07 C
ATOM 18 C6 A B1047 27.717 99.741 92.381 1.00 39.46 C
ATOM 19 N6 A B1047 28.982 99.363 92.584 1.00 38.01 N
ATOM 20 N1 A B1047 27.487 100.925 91.778 1.00 39.48 N
ATOM 21 C2 A B1047 26.218 101.282 91.525 1.00 40.01 C
ATOM 22 N3 A B1047 25.092 100.629 91.783 1.00 39.20 N
ATOM 23 C4 A B1047 25.354 99.464 92.400 1.00 40.72 C
ATOM 24 P G B1048 19.215 97.444 90.613 1.00 43.51 P
ATOM 25 OP1 G B1048 17.978 97.222 91.399 1.00 44.01 O
ATOM 26 OP2 G B1048 19.842 96.304 89.903 1.00 41.12 O
ATOM 27 O5' G B1048 18.895 98.588 89.558 1.00 42.89 O
TER

Atoms:
OP1: (15.564,103.430,100.759)
OP2: (15.525,100.992,101.588)
C3': (18.062,99.252,98.352)
C1': (19.214,101.006,97.306)
C5': (16.123,100.871,98.662)
O6: (22.413,105.975,96.204)
O4': (17.842,101.197,97.021)
C8: (19.636,103.351,98.205)
C2: (22.245,102.744,94.741)
C6: (22.046,104.801,96.054)
C5: (21.097,104.053,96.820)
C4: (20.830,102.752,96.453)
P: (16.262,102.137,100.971)
C4': (17.053,100.185,97.702)
C2': (19.254,100.177,98.585)
O2': (20.482,99.484,98.707)
N1: (22.577,104.044,95.017)
N2: (22.875,102.189,93.698)
N3: (21.363,102.038,95.434)
N7: (20.342,104.416,97.930)
N9: (19.868,102.312,97.336)
O5': (16.883,101.666,99.584)
O3': (18.401,98.258,97.397)
OP1: (22.777,95.234,97.153)
OP2: (21.518,94.356,95.097)
C3': (20.981,97.359,92.550)
C1': (23.005,98.546,92.549)
C5': (21.158,97.335,95.102)
O4': (22.335,98.902,93.740)
C8: (25.191,97.521,93.401)
O2': (22.582,97.017,90.741)
C6: (27.717,99.741,92.381)
C5: (26.601,98.965,92.739)
C4: (25.354,99.464,92.400)
P: (22.589,95.195,95.689)
C4': (21.089,98.159,93.844)
C2': (22.431,97.200,92.130)
C2: (26.218,101.282,91.525)
N1: (27.487,100.925,91.778)
N3: (25.092,100.629,91.783)
N6: (28.982,99.363,92.584)
N7: (26.482,97.744,93.385)
N9: (24.449,98.508,92.795)
O5': (22.432,96.689,95.174)
O3': (20.296,98.137,91.579)
Image (generated by PyMOL):
PyMOL image
show in jmol