Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12411:12495
Extra
PDB:
ATOM 1 O3' G A2410 20.633 -66.843 54.297 1.00 50.92 O
ATOM 2 P G A2411 20.895 -67.696 52.975 1.00 52.87 P
ATOM 3 OP1 G A2411 22.150 -67.240 52.392 1.00 52.66 O
ATOM 4 OP2 G A2411 19.668 -67.617 52.146 1.00 53.05 O
ATOM 5 O5' G A2411 21.112 -69.153 53.544 1.00 53.32 O
ATOM 6 C5' G A2411 22.366 -69.491 54.089 1.00 53.29 C
ATOM 7 C4' G A2411 22.497 -70.954 54.405 1.00 53.81 C
ATOM 8 O4' G A2411 21.567 -71.354 55.436 1.00 53.93 O
ATOM 9 C3' G A2411 22.211 -71.908 53.292 1.00 54.32 C
ATOM 10 O3' G A2411 23.238 -71.946 52.341 1.00 54.37 O
ATOM 11 C2' G A2411 22.048 -73.198 54.061 1.00 54.76 C
ATOM 12 O2' G A2411 23.307 -73.634 54.543 1.00 54.79 O
ATOM 13 C1' G A2411 21.240 -72.704 55.254 1.00 54.50 C
ATOM 14 N9 G A2411 19.808 -72.789 55.002 1.00 54.69 N
ATOM 15 C8 G A2411 19.001 -71.742 54.698 1.00 54.38 C
ATOM 16 N7 G A2411 17.777 -72.132 54.533 1.00 54.67 N
ATOM 17 C5 G A2411 17.789 -73.500 54.730 1.00 55.19 C
ATOM 18 C6 G A2411 16.737 -74.445 54.665 1.00 55.68 C
ATOM 19 O6 G A2411 15.544 -74.257 54.415 1.00 55.76 O
ATOM 20 N1 G A2411 17.196 -75.720 54.933 1.00 56.13 N
ATOM 21 C2 G A2411 18.501 -76.025 55.217 1.00 56.10 C
ATOM 22 N2 G A2411 18.736 -77.325 55.449 1.00 56.60 N
ATOM 23 N3 G A2411 19.496 -75.152 55.276 1.00 55.64 N
ATOM 24 C4 G A2411 19.056 -73.919 55.023 1.00 55.21 C
ATOM 25 P G A2412 22.877 -72.146 50.806 1.00 59.04 P
ATOM 26 OP1 G A2412 24.091 -71.837 50.028 1.00 58.92 O
ATOM 27 OP2 G A2412 21.653 -71.361 50.553 1.00 58.86 O
ATOM 28 O5' G A2412 22.560 -73.708 50.710 1.00 59.70 O
TER
ATOM 1 O3' C B2494 24.570 -82.173 62.600 1.00 53.78 O
ATOM 2 P A B2495 23.717 -82.977 61.460 1.00 54.45 P
ATOM 3 OP1 A B2495 22.451 -83.467 62.130 1.00 54.72 O
ATOM 4 OP2 A B2495 24.655 -84.014 60.817 1.00 54.92 O
ATOM 5 O5' A B2495 23.346 -81.801 60.421 1.00 54.01 O
ATOM 6 C5' A B2495 22.509 -80.737 60.824 1.00 53.56 C
ATOM 7 C4' A B2495 22.076 -79.918 59.654 1.00 53.31 C
ATOM 8 O4' A B2495 23.151 -79.061 59.213 1.00 52.89 O
ATOM 9 C3' A B2495 21.702 -80.695 58.413 1.00 53.78 C
ATOM 10 O3' A B2495 20.399 -81.225 58.499 1.00 54.12 O
ATOM 11 C2' A B2495 21.851 -79.642 57.329 1.00 53.40 C
ATOM 12 O2' A B2495 20.730 -78.764 57.336 1.00 53.10 O
ATOM 13 C1' A B2495 23.073 -78.874 57.825 1.00 52.93 C
ATOM 14 N9 A B2495 24.317 -79.380 57.239 1.00 53.12 N
ATOM 15 C8 A B2495 25.120 -80.368 57.741 1.00 53.46 C
ATOM 16 N7 A B2495 26.190 -80.587 56.999 1.00 53.57 N
ATOM 17 C5 A B2495 26.081 -79.667 55.957 1.00 53.26 C
ATOM 18 C6 A B2495 26.877 -79.365 54.835 1.00 53.19 C
ATOM 19 N6 A B2495 28.014 -79.956 54.509 1.00 53.43 N
ATOM 20 N1 A B2495 26.454 -78.410 54.002 1.00 52.89 N
ATOM 21 C2 A B2495 25.318 -77.765 54.269 1.00 52.65 C
ATOM 22 N3 A B2495 24.482 -77.953 55.282 1.00 52.67 N
ATOM 23 C4 A B2495 24.926 -78.926 56.097 1.00 52.99 C
ATOM 24 P U B2496 19.977 -82.525 57.672 1.00 61.31 P
ATOM 25 OP1 U B2496 18.574 -82.803 58.030 1.00 61.52 O
ATOM 26 OP2 U B2496 21.000 -83.553 57.920 1.00 61.68 O
ATOM 27 O5' U B2496 20.071 -82.043 56.164 1.00 61.23 O
TER
ATOM 2 P G A2411 20.895 -67.696 52.975 1.00 52.87 P
ATOM 3 OP1 G A2411 22.150 -67.240 52.392 1.00 52.66 O
ATOM 4 OP2 G A2411 19.668 -67.617 52.146 1.00 53.05 O
ATOM 5 O5' G A2411 21.112 -69.153 53.544 1.00 53.32 O
ATOM 6 C5' G A2411 22.366 -69.491 54.089 1.00 53.29 C
ATOM 7 C4' G A2411 22.497 -70.954 54.405 1.00 53.81 C
ATOM 8 O4' G A2411 21.567 -71.354 55.436 1.00 53.93 O
ATOM 9 C3' G A2411 22.211 -71.908 53.292 1.00 54.32 C
ATOM 10 O3' G A2411 23.238 -71.946 52.341 1.00 54.37 O
ATOM 11 C2' G A2411 22.048 -73.198 54.061 1.00 54.76 C
ATOM 12 O2' G A2411 23.307 -73.634 54.543 1.00 54.79 O
ATOM 13 C1' G A2411 21.240 -72.704 55.254 1.00 54.50 C
ATOM 14 N9 G A2411 19.808 -72.789 55.002 1.00 54.69 N
ATOM 15 C8 G A2411 19.001 -71.742 54.698 1.00 54.38 C
ATOM 16 N7 G A2411 17.777 -72.132 54.533 1.00 54.67 N
ATOM 17 C5 G A2411 17.789 -73.500 54.730 1.00 55.19 C
ATOM 18 C6 G A2411 16.737 -74.445 54.665 1.00 55.68 C
ATOM 19 O6 G A2411 15.544 -74.257 54.415 1.00 55.76 O
ATOM 20 N1 G A2411 17.196 -75.720 54.933 1.00 56.13 N
ATOM 21 C2 G A2411 18.501 -76.025 55.217 1.00 56.10 C
ATOM 22 N2 G A2411 18.736 -77.325 55.449 1.00 56.60 N
ATOM 23 N3 G A2411 19.496 -75.152 55.276 1.00 55.64 N
ATOM 24 C4 G A2411 19.056 -73.919 55.023 1.00 55.21 C
ATOM 25 P G A2412 22.877 -72.146 50.806 1.00 59.04 P
ATOM 26 OP1 G A2412 24.091 -71.837 50.028 1.00 58.92 O
ATOM 27 OP2 G A2412 21.653 -71.361 50.553 1.00 58.86 O
ATOM 28 O5' G A2412 22.560 -73.708 50.710 1.00 59.70 O
TER
ATOM 1 O3' C B2494 24.570 -82.173 62.600 1.00 53.78 O
ATOM 2 P A B2495 23.717 -82.977 61.460 1.00 54.45 P
ATOM 3 OP1 A B2495 22.451 -83.467 62.130 1.00 54.72 O
ATOM 4 OP2 A B2495 24.655 -84.014 60.817 1.00 54.92 O
ATOM 5 O5' A B2495 23.346 -81.801 60.421 1.00 54.01 O
ATOM 6 C5' A B2495 22.509 -80.737 60.824 1.00 53.56 C
ATOM 7 C4' A B2495 22.076 -79.918 59.654 1.00 53.31 C
ATOM 8 O4' A B2495 23.151 -79.061 59.213 1.00 52.89 O
ATOM 9 C3' A B2495 21.702 -80.695 58.413 1.00 53.78 C
ATOM 10 O3' A B2495 20.399 -81.225 58.499 1.00 54.12 O
ATOM 11 C2' A B2495 21.851 -79.642 57.329 1.00 53.40 C
ATOM 12 O2' A B2495 20.730 -78.764 57.336 1.00 53.10 O
ATOM 13 C1' A B2495 23.073 -78.874 57.825 1.00 52.93 C
ATOM 14 N9 A B2495 24.317 -79.380 57.239 1.00 53.12 N
ATOM 15 C8 A B2495 25.120 -80.368 57.741 1.00 53.46 C
ATOM 16 N7 A B2495 26.190 -80.587 56.999 1.00 53.57 N
ATOM 17 C5 A B2495 26.081 -79.667 55.957 1.00 53.26 C
ATOM 18 C6 A B2495 26.877 -79.365 54.835 1.00 53.19 C
ATOM 19 N6 A B2495 28.014 -79.956 54.509 1.00 53.43 N
ATOM 20 N1 A B2495 26.454 -78.410 54.002 1.00 52.89 N
ATOM 21 C2 A B2495 25.318 -77.765 54.269 1.00 52.65 C
ATOM 22 N3 A B2495 24.482 -77.953 55.282 1.00 52.67 N
ATOM 23 C4 A B2495 24.926 -78.926 56.097 1.00 52.99 C
ATOM 24 P U B2496 19.977 -82.525 57.672 1.00 61.31 P
ATOM 25 OP1 U B2496 18.574 -82.803 58.030 1.00 61.52 O
ATOM 26 OP2 U B2496 21.000 -83.553 57.920 1.00 61.68 O
ATOM 27 O5' U B2496 20.071 -82.043 56.164 1.00 61.23 O
TER
Atoms:
OP1: (22.150,-67.240,52.392)
OP2: (19.668,-67.617,52.146)
C3': (22.211,-71.908,53.292)
C1': (21.240,-72.704,55.254)
C5': (22.366,-69.491,54.089)
O6: (15.544,-74.257,54.415)
O4': (21.567,-71.354,55.436)
C8: (19.001,-71.742,54.698)
C2: (18.501,-76.025,55.217)
C6: (16.737,-74.445,54.665)
C5: (17.789,-73.500,54.730)
C4: (19.056,-73.919,55.023)
P: (20.895,-67.696,52.975)
C4': (22.497,-70.954,54.405)
C2': (22.048,-73.198,54.061)
O2': (23.307,-73.634,54.543)
N1: (17.196,-75.720,54.933)
N2: (18.736,-77.325,55.449)
N3: (19.496,-75.152,55.276)
N7: (17.777,-72.132,54.533)
N9: (19.808,-72.789,55.002)
O5': (21.112,-69.153,53.544)
O3': (23.238,-71.946,52.341)
OP2: (19.668,-67.617,52.146)
C3': (22.211,-71.908,53.292)
C1': (21.240,-72.704,55.254)
C5': (22.366,-69.491,54.089)
O6: (15.544,-74.257,54.415)
O4': (21.567,-71.354,55.436)
C8: (19.001,-71.742,54.698)
C2: (18.501,-76.025,55.217)
C6: (16.737,-74.445,54.665)
C5: (17.789,-73.500,54.730)
C4: (19.056,-73.919,55.023)
P: (20.895,-67.696,52.975)
C4': (22.497,-70.954,54.405)
C2': (22.048,-73.198,54.061)
O2': (23.307,-73.634,54.543)
N1: (17.196,-75.720,54.933)
N2: (18.736,-77.325,55.449)
N3: (19.496,-75.152,55.276)
N7: (17.777,-72.132,54.533)
N9: (19.808,-72.789,55.002)
O5': (21.112,-69.153,53.544)
O3': (23.238,-71.946,52.341)
OP1: (22.451,-83.467,62.130)
OP2: (24.655,-84.014,60.817)
C3': (21.702,-80.695,58.413)
C1': (23.073,-78.874,57.825)
C5': (22.509,-80.737,60.824)
O4': (23.151,-79.061,59.213)
C8: (25.120,-80.368,57.741)
O2': (20.730,-78.764,57.336)
C6: (26.877,-79.365,54.835)
C5: (26.081,-79.667,55.957)
C4: (24.926,-78.926,56.097)
P: (23.717,-82.977,61.460)
C4': (22.076,-79.918,59.654)
C2': (21.851,-79.642,57.329)
C2: (25.318,-77.765,54.269)
N1: (26.454,-78.410,54.002)
N3: (24.482,-77.953,55.282)
N6: (28.014,-79.956,54.509)
N7: (26.190,-80.587,56.999)
N9: (24.317,-79.380,57.239)
O5': (23.346,-81.801,60.421)
O3': (20.399,-81.225,58.499)
OP2: (24.655,-84.014,60.817)
C3': (21.702,-80.695,58.413)
C1': (23.073,-78.874,57.825)
C5': (22.509,-80.737,60.824)
O4': (23.151,-79.061,59.213)
C8: (25.120,-80.368,57.741)
O2': (20.730,-78.764,57.336)
C6: (26.877,-79.365,54.835)
C5: (26.081,-79.667,55.957)
C4: (24.926,-78.926,56.097)
P: (23.717,-82.977,61.460)
C4': (22.076,-79.918,59.654)
C2': (21.851,-79.642,57.329)
C2: (25.318,-77.765,54.269)
N1: (26.454,-78.410,54.002)
N3: (24.482,-77.953,55.282)
N6: (28.014,-79.956,54.509)
N7: (26.190,-80.587,56.999)
N9: (24.317,-79.380,57.239)
O5': (23.346,-81.801,60.421)
O3': (20.399,-81.225,58.499)
Image (generated by PyMOL):