Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3TRA:A43:A25
Extra
PDB:
ATOM 1 O3' C A 42 -5.469 13.348 -5.427 1.00 0.44 O
ATOM 2 P A A 43 -4.559 13.144 -4.111 1.00 1.64 P
ATOM 3 OP1 A A 43 -5.421 13.314 -2.900 1.00 7.40 O
ATOM 4 OP2 A A 43 -3.522 14.198 -4.216 1.00 1.10 O
ATOM 5 O5' A A 43 -4.040 11.635 -4.231 1.00 1.89 O
ATOM 6 C5' A A 43 -5.047 10.594 -4.246 1.00 1.59 C
ATOM 7 C4' A A 43 -4.390 9.268 -4.545 1.00 1.62 C
ATOM 8 O4' A A 43 -3.950 9.214 -5.905 1.00 0.34 O
ATOM 9 C3' A A 43 -3.130 8.976 -3.737 1.00 2.53 C
ATOM 10 O3' A A 43 -3.407 8.493 -2.422 1.00 2.06 O
ATOM 11 C2' A A 43 -2.418 7.956 -4.605 1.00 4.20 C
ATOM 12 O2' A A 43 -3.027 6.705 -4.320 1.00 6.42 O
ATOM 13 C1' A A 43 -2.756 8.439 -6.010 1.00 2.69 C
ATOM 14 N9 A A 43 -1.616 9.214 -6.533 1.00 2.20 N
ATOM 15 C8 A A 43 -1.405 10.567 -6.429 1.00 6.38 C
ATOM 16 N7 A A 43 -0.296 10.975 -6.982 1.00 6.51 N
ATOM 17 C5 A A 43 0.265 9.806 -7.490 1.00 5.70 C
ATOM 18 C6 A A 43 1.465 9.588 -8.208 1.00 5.16 C
ATOM 19 N6 A A 43 2.322 10.540 -8.536 1.00 2.38 N
ATOM 20 N1 A A 43 1.701 8.289 -8.566 1.00 2.19 N
ATOM 21 C2 A A 43 0.826 7.296 -8.238 1.00 4.63 C
ATOM 22 N3 A A 43 -0.314 7.439 -7.565 1.00 8.01 N
ATOM 23 C4 A A 43 -0.537 8.724 -7.221 1.00 3.85 C
ATOM 24 P G A 44 -2.647 9.126 -1.151 1.00 15.56 P
ATOM 25 OP1 G A 44 -3.467 8.956 0.090 1.00 9.64 O
ATOM 26 OP2 G A 44 -2.430 10.547 -1.510 1.00 10.79 O
ATOM 27 O5' G A 44 -1.321 8.235 -1.076 1.00 0.00 O
TER
ATOM 1 O3' U B 24 10.420 9.608 -16.236 1.00 0.35 O
ATOM 2 P G B 25 9.135 8.826 -16.834 1.00 2.76 P
ATOM 3 OP1 G B 25 9.413 8.446 -18.254 1.00 9.16 O
ATOM 4 OP2 G B 25 8.026 9.806 -16.699 1.00 2.90 O
ATOM 5 O5' G B 25 8.973 7.589 -15.847 1.00 7.53 O
ATOM 6 C5' G B 25 9.027 6.222 -16.310 1.00 6.44 C
ATOM 7 C4' G B 25 8.207 5.379 -15.354 1.00 0.99 C
ATOM 8 O4' G B 25 8.394 5.841 -14.008 1.00 0.00 O
ATOM 9 C3' G B 25 6.699 5.447 -15.563 1.00 0.00 C
ATOM 10 O3' G B 25 6.193 4.597 -16.594 1.00 0.00 O
ATOM 11 C2' G B 25 6.163 5.032 -14.188 1.00 0.17 C
ATOM 12 O2' G B 25 6.193 3.618 -14.128 1.00 1.25 O
ATOM 13 C1' G B 25 7.194 5.664 -13.276 1.00 2.29 C
ATOM 14 N9 G B 25 6.597 6.916 -12.782 1.00 5.91 N
ATOM 15 C8 G B 25 6.760 8.187 -13.276 1.00 3.06 C
ATOM 16 N7 G B 25 6.084 9.092 -12.618 1.00 3.20 N
ATOM 17 C5 G B 25 5.421 8.371 -11.631 1.00 0.00 C
ATOM 18 C6 G B 25 4.535 8.786 -10.600 1.00 1.38 C
ATOM 19 O6 G B 25 4.143 9.935 -10.360 1.00 1.72 O
ATOM 20 N1 G B 25 4.076 7.766 -9.807 1.00 1.61 N
ATOM 21 C2 G B 25 4.450 6.474 -10.002 1.00 2.34 C
ATOM 22 N2 G B 25 3.914 5.590 -9.134 1.00 2.96 N
ATOM 23 N3 G B 25 5.282 6.032 -10.943 1.00 1.18 N
ATOM 24 C4 G B 25 5.728 7.031 -11.721 1.00 1.53 C
ATOM 25 P G B 26 4.746 5.046 -17.177 1.00 4.02 P
ATOM 26 OP1 G B 26 4.414 4.304 -18.433 1.00 6.59 O
ATOM 27 OP2 G B 26 4.945 6.501 -17.432 1.00 3.32 O
ATOM 28 O5' G B 26 3.745 4.712 -15.997 1.00 0.11 O
TER
ATOM 2 P A A 43 -4.559 13.144 -4.111 1.00 1.64 P
ATOM 3 OP1 A A 43 -5.421 13.314 -2.900 1.00 7.40 O
ATOM 4 OP2 A A 43 -3.522 14.198 -4.216 1.00 1.10 O
ATOM 5 O5' A A 43 -4.040 11.635 -4.231 1.00 1.89 O
ATOM 6 C5' A A 43 -5.047 10.594 -4.246 1.00 1.59 C
ATOM 7 C4' A A 43 -4.390 9.268 -4.545 1.00 1.62 C
ATOM 8 O4' A A 43 -3.950 9.214 -5.905 1.00 0.34 O
ATOM 9 C3' A A 43 -3.130 8.976 -3.737 1.00 2.53 C
ATOM 10 O3' A A 43 -3.407 8.493 -2.422 1.00 2.06 O
ATOM 11 C2' A A 43 -2.418 7.956 -4.605 1.00 4.20 C
ATOM 12 O2' A A 43 -3.027 6.705 -4.320 1.00 6.42 O
ATOM 13 C1' A A 43 -2.756 8.439 -6.010 1.00 2.69 C
ATOM 14 N9 A A 43 -1.616 9.214 -6.533 1.00 2.20 N
ATOM 15 C8 A A 43 -1.405 10.567 -6.429 1.00 6.38 C
ATOM 16 N7 A A 43 -0.296 10.975 -6.982 1.00 6.51 N
ATOM 17 C5 A A 43 0.265 9.806 -7.490 1.00 5.70 C
ATOM 18 C6 A A 43 1.465 9.588 -8.208 1.00 5.16 C
ATOM 19 N6 A A 43 2.322 10.540 -8.536 1.00 2.38 N
ATOM 20 N1 A A 43 1.701 8.289 -8.566 1.00 2.19 N
ATOM 21 C2 A A 43 0.826 7.296 -8.238 1.00 4.63 C
ATOM 22 N3 A A 43 -0.314 7.439 -7.565 1.00 8.01 N
ATOM 23 C4 A A 43 -0.537 8.724 -7.221 1.00 3.85 C
ATOM 24 P G A 44 -2.647 9.126 -1.151 1.00 15.56 P
ATOM 25 OP1 G A 44 -3.467 8.956 0.090 1.00 9.64 O
ATOM 26 OP2 G A 44 -2.430 10.547 -1.510 1.00 10.79 O
ATOM 27 O5' G A 44 -1.321 8.235 -1.076 1.00 0.00 O
TER
ATOM 1 O3' U B 24 10.420 9.608 -16.236 1.00 0.35 O
ATOM 2 P G B 25 9.135 8.826 -16.834 1.00 2.76 P
ATOM 3 OP1 G B 25 9.413 8.446 -18.254 1.00 9.16 O
ATOM 4 OP2 G B 25 8.026 9.806 -16.699 1.00 2.90 O
ATOM 5 O5' G B 25 8.973 7.589 -15.847 1.00 7.53 O
ATOM 6 C5' G B 25 9.027 6.222 -16.310 1.00 6.44 C
ATOM 7 C4' G B 25 8.207 5.379 -15.354 1.00 0.99 C
ATOM 8 O4' G B 25 8.394 5.841 -14.008 1.00 0.00 O
ATOM 9 C3' G B 25 6.699 5.447 -15.563 1.00 0.00 C
ATOM 10 O3' G B 25 6.193 4.597 -16.594 1.00 0.00 O
ATOM 11 C2' G B 25 6.163 5.032 -14.188 1.00 0.17 C
ATOM 12 O2' G B 25 6.193 3.618 -14.128 1.00 1.25 O
ATOM 13 C1' G B 25 7.194 5.664 -13.276 1.00 2.29 C
ATOM 14 N9 G B 25 6.597 6.916 -12.782 1.00 5.91 N
ATOM 15 C8 G B 25 6.760 8.187 -13.276 1.00 3.06 C
ATOM 16 N7 G B 25 6.084 9.092 -12.618 1.00 3.20 N
ATOM 17 C5 G B 25 5.421 8.371 -11.631 1.00 0.00 C
ATOM 18 C6 G B 25 4.535 8.786 -10.600 1.00 1.38 C
ATOM 19 O6 G B 25 4.143 9.935 -10.360 1.00 1.72 O
ATOM 20 N1 G B 25 4.076 7.766 -9.807 1.00 1.61 N
ATOM 21 C2 G B 25 4.450 6.474 -10.002 1.00 2.34 C
ATOM 22 N2 G B 25 3.914 5.590 -9.134 1.00 2.96 N
ATOM 23 N3 G B 25 5.282 6.032 -10.943 1.00 1.18 N
ATOM 24 C4 G B 25 5.728 7.031 -11.721 1.00 1.53 C
ATOM 25 P G B 26 4.746 5.046 -17.177 1.00 4.02 P
ATOM 26 OP1 G B 26 4.414 4.304 -18.433 1.00 6.59 O
ATOM 27 OP2 G B 26 4.945 6.501 -17.432 1.00 3.32 O
ATOM 28 O5' G B 26 3.745 4.712 -15.997 1.00 0.11 O
TER
Atoms:
OP1: (-5.421,13.314,-2.900)
OP2: (-3.522,14.198,-4.216)
C3': (-3.130,8.976,-3.737)
C1': (-2.756,8.439,-6.010)
C5': (-5.047,10.594,-4.246)
O4': (-3.950,9.214,-5.905)
C8: (-1.405,10.567,-6.429)
O2': (-3.027,6.705,-4.320)
C6: (1.465,9.588,-8.208)
C5: (0.265,9.806,-7.490)
C4: (-0.537,8.724,-7.221)
P: (-4.559,13.144,-4.111)
C4': (-4.390,9.268,-4.545)
C2': (-2.418,7.956,-4.605)
C2: (0.826,7.296,-8.238)
N1: (1.701,8.289,-8.566)
N3: (-0.314,7.439,-7.565)
N6: (2.322,10.540,-8.536)
N7: (-0.296,10.975,-6.982)
N9: (-1.616,9.214,-6.533)
O5': (-4.040,11.635,-4.231)
O3': (-3.407,8.493,-2.422)
OP2: (-3.522,14.198,-4.216)
C3': (-3.130,8.976,-3.737)
C1': (-2.756,8.439,-6.010)
C5': (-5.047,10.594,-4.246)
O4': (-3.950,9.214,-5.905)
C8: (-1.405,10.567,-6.429)
O2': (-3.027,6.705,-4.320)
C6: (1.465,9.588,-8.208)
C5: (0.265,9.806,-7.490)
C4: (-0.537,8.724,-7.221)
P: (-4.559,13.144,-4.111)
C4': (-4.390,9.268,-4.545)
C2': (-2.418,7.956,-4.605)
C2: (0.826,7.296,-8.238)
N1: (1.701,8.289,-8.566)
N3: (-0.314,7.439,-7.565)
N6: (2.322,10.540,-8.536)
N7: (-0.296,10.975,-6.982)
N9: (-1.616,9.214,-6.533)
O5': (-4.040,11.635,-4.231)
O3': (-3.407,8.493,-2.422)
OP1: (9.413,8.446,-18.254)
OP2: (8.026,9.806,-16.699)
C3': (6.699,5.447,-15.563)
C1': (7.194,5.664,-13.276)
C5': (9.027,6.222,-16.310)
O6: (4.143,9.935,-10.360)
O4': (8.394,5.841,-14.008)
C8: (6.760,8.187,-13.276)
C2: (4.450,6.474,-10.002)
C6: (4.535,8.786,-10.600)
C5: (5.421,8.371,-11.631)
C4: (5.728,7.031,-11.721)
P: (9.135,8.826,-16.834)
C4': (8.207,5.379,-15.354)
C2': (6.163,5.032,-14.188)
O2': (6.193,3.618,-14.128)
N1: (4.076,7.766,-9.807)
N2: (3.914,5.590,-9.134)
N3: (5.282,6.032,-10.943)
N7: (6.084,9.092,-12.618)
N9: (6.597,6.916,-12.782)
O5': (8.973,7.589,-15.847)
O3': (6.193,4.597,-16.594)
OP2: (8.026,9.806,-16.699)
C3': (6.699,5.447,-15.563)
C1': (7.194,5.664,-13.276)
C5': (9.027,6.222,-16.310)
O6: (4.143,9.935,-10.360)
O4': (8.394,5.841,-14.008)
C8: (6.760,8.187,-13.276)
C2: (4.450,6.474,-10.002)
C6: (4.535,8.786,-10.600)
C5: (5.421,8.371,-11.631)
C4: (5.728,7.031,-11.721)
P: (9.135,8.826,-16.834)
C4': (8.207,5.379,-15.354)
C2': (6.163,5.032,-14.188)
O2': (6.193,3.618,-14.128)
N1: (4.076,7.766,-9.807)
N2: (3.914,5.590,-9.134)
N3: (5.282,6.032,-10.943)
N7: (6.084,9.092,-12.618)
N9: (6.597,6.916,-12.782)
O5': (8.973,7.589,-15.847)
O3': (6.193,4.597,-16.594)
Image (generated by PyMOL):