Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A351:A277
Extra
PDB:
ATOM 1 O3' G A 350 53.828 116.112 -6.253 1.00103.88 O
ATOM 2 P A A 351 55.123 115.304 -6.771 1.00104.30 P
ATOM 3 OP1 A A 351 54.679 114.508 -7.944 1.00103.27 O
ATOM 4 OP2 A A 351 55.752 114.606 -5.605 1.00103.75 O
ATOM 5 O5' A A 351 56.127 116.450 -7.263 1.00102.57 O
ATOM 6 C5' A A 351 55.751 117.389 -8.307 1.00101.84 C
ATOM 7 C4' A A 351 56.666 118.597 -8.291 1.00101.17 C
ATOM 8 O4' A A 351 56.582 119.206 -6.977 1.00101.32 O
ATOM 9 C3' A A 351 58.155 118.340 -8.509 1.00101.39 C
ATOM 10 O3' A A 351 58.535 118.263 -9.894 1.00101.99 O
ATOM 11 C2' A A 351 58.799 119.504 -7.767 1.00101.15 C
ATOM 12 O2' A A 351 58.817 120.724 -8.483 1.00100.83 O
ATOM 13 C1' A A 351 57.870 119.629 -6.557 1.00101.41 C
ATOM 14 N9 A A 351 58.287 118.784 -5.432 1.00101.84 N
ATOM 15 C8 A A 351 57.785 117.560 -5.053 1.00102.03 C
ATOM 16 N7 A A 351 58.384 117.043 -4.008 1.00102.36 N
ATOM 17 C5 A A 351 59.347 117.985 -3.676 1.00102.08 C
ATOM 18 C6 A A 351 60.321 118.028 -2.664 1.00102.26 C
ATOM 19 N6 A A 351 60.505 117.061 -1.759 1.00102.80 N
ATOM 20 N1 A A 351 61.113 119.117 -2.610 1.00102.34 N
ATOM 21 C2 A A 351 60.934 120.089 -3.514 1.00102.09 C
ATOM 22 N3 A A 351 60.065 120.162 -4.509 1.00102.02 N
ATOM 23 C4 A A 351 59.291 119.066 -4.538 1.00101.86 C
ATOM 24 P C A 352 59.909 117.513 -10.318 1.00102.20 P
ATOM 25 OP1 C A 352 59.958 117.438 -11.802 1.00102.59 O
ATOM 26 OP2 C A 352 60.099 116.275 -9.518 1.00101.84 O
ATOM 27 O5' C A 352 61.039 118.521 -9.857 1.00100.55 O
TER
ATOM 1 O3' A B 276 70.873 121.529 2.420 1.00105.22 O
ATOM 2 P G B 277 69.724 122.296 3.242 1.00105.14 P
ATOM 3 OP1 G B 277 70.382 123.336 4.078 1.00104.90 O
ATOM 4 OP2 G B 277 68.861 121.259 3.885 1.00105.10 O
ATOM 5 O5' G B 277 68.862 123.039 2.126 1.00104.29 O
ATOM 6 C5' G B 277 69.367 124.227 1.479 1.00101.81 C
ATOM 7 C4' G B 277 68.652 124.456 0.170 1.00 99.33 C
ATOM 8 O4' G B 277 68.714 123.225 -0.598 1.00 98.59 O
ATOM 9 C3' G B 277 67.158 124.734 0.255 1.00 98.35 C
ATOM 10 O3' G B 277 66.843 126.090 0.533 1.00 98.34 O
ATOM 11 C2' G B 277 66.696 124.342 -1.133 1.00 97.75 C
ATOM 12 O2' G B 277 67.014 125.332 -2.093 1.00 96.97 O
ATOM 13 C1' G B 277 67.521 123.075 -1.350 1.00 97.64 C
ATOM 14 N9 G B 277 66.781 121.920 -0.848 1.00 97.07 N
ATOM 15 C8 G B 277 67.037 121.130 0.253 1.00 96.68 C
ATOM 16 N7 G B 277 66.145 120.190 0.421 1.00 96.21 N
ATOM 17 C5 G B 277 65.259 120.371 -0.636 1.00 96.32 C
ATOM 18 C6 G B 277 64.089 119.658 -0.997 1.00 96.34 C
ATOM 19 O6 G B 277 63.581 118.676 -0.444 1.00 97.57 O
ATOM 20 N1 G B 277 63.499 120.195 -2.138 1.00 95.55 N
ATOM 21 C2 G B 277 63.972 121.276 -2.842 1.00 95.40 C
ATOM 22 N2 G B 277 63.271 121.653 -3.917 1.00 95.36 N
ATOM 23 N3 G B 277 65.054 121.939 -2.518 1.00 95.56 N
ATOM 24 C4 G B 277 65.644 121.436 -1.418 1.00 96.41 C
ATOM 25 P C B 278 65.338 126.482 0.960 1.00 98.73 P
ATOM 26 OP1 C B 278 65.289 127.936 1.237 1.00 98.86 O
ATOM 27 OP2 C B 278 64.860 125.520 1.993 1.00 98.90 O
ATOM 28 O5' C B 278 64.498 126.241 -0.363 1.00 96.82 O
TER
ATOM 2 P A A 351 55.123 115.304 -6.771 1.00104.30 P
ATOM 3 OP1 A A 351 54.679 114.508 -7.944 1.00103.27 O
ATOM 4 OP2 A A 351 55.752 114.606 -5.605 1.00103.75 O
ATOM 5 O5' A A 351 56.127 116.450 -7.263 1.00102.57 O
ATOM 6 C5' A A 351 55.751 117.389 -8.307 1.00101.84 C
ATOM 7 C4' A A 351 56.666 118.597 -8.291 1.00101.17 C
ATOM 8 O4' A A 351 56.582 119.206 -6.977 1.00101.32 O
ATOM 9 C3' A A 351 58.155 118.340 -8.509 1.00101.39 C
ATOM 10 O3' A A 351 58.535 118.263 -9.894 1.00101.99 O
ATOM 11 C2' A A 351 58.799 119.504 -7.767 1.00101.15 C
ATOM 12 O2' A A 351 58.817 120.724 -8.483 1.00100.83 O
ATOM 13 C1' A A 351 57.870 119.629 -6.557 1.00101.41 C
ATOM 14 N9 A A 351 58.287 118.784 -5.432 1.00101.84 N
ATOM 15 C8 A A 351 57.785 117.560 -5.053 1.00102.03 C
ATOM 16 N7 A A 351 58.384 117.043 -4.008 1.00102.36 N
ATOM 17 C5 A A 351 59.347 117.985 -3.676 1.00102.08 C
ATOM 18 C6 A A 351 60.321 118.028 -2.664 1.00102.26 C
ATOM 19 N6 A A 351 60.505 117.061 -1.759 1.00102.80 N
ATOM 20 N1 A A 351 61.113 119.117 -2.610 1.00102.34 N
ATOM 21 C2 A A 351 60.934 120.089 -3.514 1.00102.09 C
ATOM 22 N3 A A 351 60.065 120.162 -4.509 1.00102.02 N
ATOM 23 C4 A A 351 59.291 119.066 -4.538 1.00101.86 C
ATOM 24 P C A 352 59.909 117.513 -10.318 1.00102.20 P
ATOM 25 OP1 C A 352 59.958 117.438 -11.802 1.00102.59 O
ATOM 26 OP2 C A 352 60.099 116.275 -9.518 1.00101.84 O
ATOM 27 O5' C A 352 61.039 118.521 -9.857 1.00100.55 O
TER
ATOM 1 O3' A B 276 70.873 121.529 2.420 1.00105.22 O
ATOM 2 P G B 277 69.724 122.296 3.242 1.00105.14 P
ATOM 3 OP1 G B 277 70.382 123.336 4.078 1.00104.90 O
ATOM 4 OP2 G B 277 68.861 121.259 3.885 1.00105.10 O
ATOM 5 O5' G B 277 68.862 123.039 2.126 1.00104.29 O
ATOM 6 C5' G B 277 69.367 124.227 1.479 1.00101.81 C
ATOM 7 C4' G B 277 68.652 124.456 0.170 1.00 99.33 C
ATOM 8 O4' G B 277 68.714 123.225 -0.598 1.00 98.59 O
ATOM 9 C3' G B 277 67.158 124.734 0.255 1.00 98.35 C
ATOM 10 O3' G B 277 66.843 126.090 0.533 1.00 98.34 O
ATOM 11 C2' G B 277 66.696 124.342 -1.133 1.00 97.75 C
ATOM 12 O2' G B 277 67.014 125.332 -2.093 1.00 96.97 O
ATOM 13 C1' G B 277 67.521 123.075 -1.350 1.00 97.64 C
ATOM 14 N9 G B 277 66.781 121.920 -0.848 1.00 97.07 N
ATOM 15 C8 G B 277 67.037 121.130 0.253 1.00 96.68 C
ATOM 16 N7 G B 277 66.145 120.190 0.421 1.00 96.21 N
ATOM 17 C5 G B 277 65.259 120.371 -0.636 1.00 96.32 C
ATOM 18 C6 G B 277 64.089 119.658 -0.997 1.00 96.34 C
ATOM 19 O6 G B 277 63.581 118.676 -0.444 1.00 97.57 O
ATOM 20 N1 G B 277 63.499 120.195 -2.138 1.00 95.55 N
ATOM 21 C2 G B 277 63.972 121.276 -2.842 1.00 95.40 C
ATOM 22 N2 G B 277 63.271 121.653 -3.917 1.00 95.36 N
ATOM 23 N3 G B 277 65.054 121.939 -2.518 1.00 95.56 N
ATOM 24 C4 G B 277 65.644 121.436 -1.418 1.00 96.41 C
ATOM 25 P C B 278 65.338 126.482 0.960 1.00 98.73 P
ATOM 26 OP1 C B 278 65.289 127.936 1.237 1.00 98.86 O
ATOM 27 OP2 C B 278 64.860 125.520 1.993 1.00 98.90 O
ATOM 28 O5' C B 278 64.498 126.241 -0.363 1.00 96.82 O
TER
Atoms:
OP1: (54.679,114.508,-7.944)
OP2: (55.752,114.606,-5.605)
C3': (58.155,118.340,-8.509)
C1': (57.870,119.629,-6.557)
C5': (55.751,117.389,-8.307)
O4': (56.582,119.206,-6.977)
C8: (57.785,117.560,-5.053)
O2': (58.817,120.724,-8.483)
C6: (60.321,118.028,-2.664)
C5: (59.347,117.985,-3.676)
C4: (59.291,119.066,-4.538)
P: (55.123,115.304,-6.771)
C4': (56.666,118.597,-8.291)
C2': (58.799,119.504,-7.767)
C2: (60.934,120.089,-3.514)
N1: (61.113,119.117,-2.610)
N3: (60.065,120.162,-4.509)
N6: (60.505,117.061,-1.759)
N7: (58.384,117.043,-4.008)
N9: (58.287,118.784,-5.432)
O5': (56.127,116.450,-7.263)
O3': (58.535,118.263,-9.894)
OP2: (55.752,114.606,-5.605)
C3': (58.155,118.340,-8.509)
C1': (57.870,119.629,-6.557)
C5': (55.751,117.389,-8.307)
O4': (56.582,119.206,-6.977)
C8: (57.785,117.560,-5.053)
O2': (58.817,120.724,-8.483)
C6: (60.321,118.028,-2.664)
C5: (59.347,117.985,-3.676)
C4: (59.291,119.066,-4.538)
P: (55.123,115.304,-6.771)
C4': (56.666,118.597,-8.291)
C2': (58.799,119.504,-7.767)
C2: (60.934,120.089,-3.514)
N1: (61.113,119.117,-2.610)
N3: (60.065,120.162,-4.509)
N6: (60.505,117.061,-1.759)
N7: (58.384,117.043,-4.008)
N9: (58.287,118.784,-5.432)
O5': (56.127,116.450,-7.263)
O3': (58.535,118.263,-9.894)
OP1: (70.382,123.336,4.078)
OP2: (68.861,121.259,3.885)
C3': (67.158,124.734,0.255)
C1': (67.521,123.075,-1.350)
C5': (69.367,124.227,1.479)
O6: (63.581,118.676,-0.444)
O4': (68.714,123.225,-0.598)
C8: (67.037,121.130,0.253)
C2: (63.972,121.276,-2.842)
C6: (64.089,119.658,-0.997)
C5: (65.259,120.371,-0.636)
C4: (65.644,121.436,-1.418)
P: (69.724,122.296,3.242)
C4': (68.652,124.456,0.170)
C2': (66.696,124.342,-1.133)
O2': (67.014,125.332,-2.093)
N1: (63.499,120.195,-2.138)
N2: (63.271,121.653,-3.917)
N3: (65.054,121.939,-2.518)
N7: (66.145,120.190,0.421)
N9: (66.781,121.920,-0.848)
O5': (68.862,123.039,2.126)
O3': (66.843,126.090,0.533)
OP2: (68.861,121.259,3.885)
C3': (67.158,124.734,0.255)
C1': (67.521,123.075,-1.350)
C5': (69.367,124.227,1.479)
O6: (63.581,118.676,-0.444)
O4': (68.714,123.225,-0.598)
C8: (67.037,121.130,0.253)
C2: (63.972,121.276,-2.842)
C6: (64.089,119.658,-0.997)
C5: (65.259,120.371,-0.636)
C4: (65.644,121.436,-1.418)
P: (69.724,122.296,3.242)
C4': (68.652,124.456,0.170)
C2': (66.696,124.342,-1.133)
O2': (67.014,125.332,-2.093)
N1: (63.499,120.195,-2.138)
N2: (63.271,121.653,-3.917)
N3: (65.054,121.939,-2.518)
N7: (66.145,120.190,0.421)
N9: (66.781,121.920,-0.848)
O5': (68.862,123.039,2.126)
O3': (66.843,126.090,0.533)
Image (generated by PyMOL):