Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A4:A83
Extra
PDB:
ATOM 1 O3' G A 3 3.808 -32.941 12.587 1.00 48.66 O
ATOM 2 P A A 4 3.178 -31.633 13.277 1.00 41.23 P
ATOM 3 OP1 A A 4 3.156 -30.565 12.248 1.00 45.43 O
ATOM 4 OP2 A A 4 3.932 -31.396 14.535 1.00 39.09 O
ATOM 5 O5' A A 4 1.692 -32.092 13.614 1.00 31.76 O
ATOM 6 C5' A A 4 0.804 -32.504 12.587 1.00 33.91 C
ATOM 7 C4' A A 4 -0.502 -32.999 13.154 1.00 37.10 C
ATOM 8 O4' A A 4 -0.264 -34.171 13.974 1.00 40.39 O
ATOM 9 C3' A A 4 -1.232 -32.032 14.077 1.00 37.75 C
ATOM 10 O3' A A 4 -2.014 -31.084 13.368 1.00 39.64 O
ATOM 11 C2' A A 4 -2.057 -32.957 14.964 1.00 38.78 C
ATOM 12 O2' A A 4 -3.254 -33.348 14.308 1.00 41.79 O
ATOM 13 C1' A A 4 -1.142 -34.181 15.076 1.00 39.96 C
ATOM 14 N9 A A 4 -0.338 -34.173 16.315 1.00 39.20 N
ATOM 15 C8 A A 4 0.938 -33.692 16.502 1.00 36.52 C
ATOM 16 N7 A A 4 1.396 -33.840 17.724 1.00 35.15 N
ATOM 17 C5 A A 4 0.348 -34.470 18.381 1.00 35.72 C
ATOM 18 C6 A A 4 0.189 -34.910 19.706 1.00 35.90 C
ATOM 19 N6 A A 4 1.127 -34.777 20.644 1.00 35.70 N
ATOM 20 N1 A A 4 -0.980 -35.501 20.040 1.00 34.95 N
ATOM 21 C2 A A 4 -1.926 -35.640 19.105 1.00 39.15 C
ATOM 22 N3 A A 4 -1.899 -35.269 17.826 1.00 42.74 N
ATOM 23 C4 A A 4 -0.721 -34.686 17.528 1.00 39.40 C
ATOM 24 P G A 5 -1.830 -29.511 13.642 1.00 35.81 P
ATOM 25 OP1 G A 5 -2.574 -28.793 12.580 1.00 35.12 O
ATOM 26 OP2 G A 5 -0.375 -29.259 13.790 1.00 34.58 O
ATOM 27 O5' G A 5 -2.560 -29.311 15.040 1.00 39.38 O
TER
ATOM 1 O3' C B 82 1.344 -41.892 30.204 1.00 41.81 O
ATOM 2 P G B 83 1.462 -42.590 28.760 1.00 40.95 P
ATOM 3 OP1 G B 83 1.342 -44.053 28.972 1.00 44.21 O
ATOM 4 OP2 G B 83 2.691 -42.061 28.120 1.00 37.74 O
ATOM 5 O5' G B 83 0.175 -42.047 27.996 1.00 37.99 O
ATOM 6 C5' G B 83 -1.128 -42.434 28.408 1.00 42.23 C
ATOM 7 C4' G B 83 -2.201 -41.709 27.632 1.00 42.40 C
ATOM 8 O4' G B 83 -2.001 -40.275 27.725 1.00 37.71 O
ATOM 9 C3' G B 83 -2.242 -41.971 26.136 1.00 41.37 C
ATOM 10 O3' G B 83 -2.867 -43.196 25.805 1.00 43.08 O
ATOM 11 C2' G B 83 -2.982 -40.749 25.614 1.00 41.63 C
ATOM 12 O2' G B 83 -4.377 -40.873 25.845 1.00 41.28 O
ATOM 13 C1' G B 83 -2.437 -39.655 26.532 1.00 34.28 C
ATOM 14 N9 G B 83 -1.298 -38.942 25.926 1.00 35.47 N
ATOM 15 C8 G B 83 0.023 -38.964 26.305 1.00 36.06 C
ATOM 16 N7 G B 83 0.781 -38.208 25.554 1.00 35.02 N
ATOM 17 C5 G B 83 -0.094 -37.654 24.624 1.00 35.48 C
ATOM 18 C6 G B 83 0.136 -36.754 23.551 1.00 34.73 C
ATOM 19 O6 G B 83 1.201 -36.240 23.186 1.00 39.09 O
ATOM 20 N1 G B 83 -1.037 -36.457 22.867 1.00 34.42 N
ATOM 21 C2 G B 83 -2.279 -36.959 23.170 1.00 37.93 C
ATOM 22 N2 G B 83 -3.297 -36.556 22.392 1.00 37.04 N
ATOM 23 N3 G B 83 -2.507 -37.797 24.166 1.00 36.58 N
ATOM 24 C4 G B 83 -1.379 -38.098 24.844 1.00 37.28 C
ATOM 25 P C B 84 -2.368 -44.035 24.531 1.00 47.83 P
ATOM 26 OP1 C B 84 -3.120 -45.315 24.529 1.00 42.06 O
ATOM 27 OP2 C B 84 -0.885 -44.077 24.591 1.00 39.81 O
ATOM 28 O5' C B 84 -2.833 -43.130 23.307 1.00 52.12 O
TER
ATOM 2 P A A 4 3.178 -31.633 13.277 1.00 41.23 P
ATOM 3 OP1 A A 4 3.156 -30.565 12.248 1.00 45.43 O
ATOM 4 OP2 A A 4 3.932 -31.396 14.535 1.00 39.09 O
ATOM 5 O5' A A 4 1.692 -32.092 13.614 1.00 31.76 O
ATOM 6 C5' A A 4 0.804 -32.504 12.587 1.00 33.91 C
ATOM 7 C4' A A 4 -0.502 -32.999 13.154 1.00 37.10 C
ATOM 8 O4' A A 4 -0.264 -34.171 13.974 1.00 40.39 O
ATOM 9 C3' A A 4 -1.232 -32.032 14.077 1.00 37.75 C
ATOM 10 O3' A A 4 -2.014 -31.084 13.368 1.00 39.64 O
ATOM 11 C2' A A 4 -2.057 -32.957 14.964 1.00 38.78 C
ATOM 12 O2' A A 4 -3.254 -33.348 14.308 1.00 41.79 O
ATOM 13 C1' A A 4 -1.142 -34.181 15.076 1.00 39.96 C
ATOM 14 N9 A A 4 -0.338 -34.173 16.315 1.00 39.20 N
ATOM 15 C8 A A 4 0.938 -33.692 16.502 1.00 36.52 C
ATOM 16 N7 A A 4 1.396 -33.840 17.724 1.00 35.15 N
ATOM 17 C5 A A 4 0.348 -34.470 18.381 1.00 35.72 C
ATOM 18 C6 A A 4 0.189 -34.910 19.706 1.00 35.90 C
ATOM 19 N6 A A 4 1.127 -34.777 20.644 1.00 35.70 N
ATOM 20 N1 A A 4 -0.980 -35.501 20.040 1.00 34.95 N
ATOM 21 C2 A A 4 -1.926 -35.640 19.105 1.00 39.15 C
ATOM 22 N3 A A 4 -1.899 -35.269 17.826 1.00 42.74 N
ATOM 23 C4 A A 4 -0.721 -34.686 17.528 1.00 39.40 C
ATOM 24 P G A 5 -1.830 -29.511 13.642 1.00 35.81 P
ATOM 25 OP1 G A 5 -2.574 -28.793 12.580 1.00 35.12 O
ATOM 26 OP2 G A 5 -0.375 -29.259 13.790 1.00 34.58 O
ATOM 27 O5' G A 5 -2.560 -29.311 15.040 1.00 39.38 O
TER
ATOM 1 O3' C B 82 1.344 -41.892 30.204 1.00 41.81 O
ATOM 2 P G B 83 1.462 -42.590 28.760 1.00 40.95 P
ATOM 3 OP1 G B 83 1.342 -44.053 28.972 1.00 44.21 O
ATOM 4 OP2 G B 83 2.691 -42.061 28.120 1.00 37.74 O
ATOM 5 O5' G B 83 0.175 -42.047 27.996 1.00 37.99 O
ATOM 6 C5' G B 83 -1.128 -42.434 28.408 1.00 42.23 C
ATOM 7 C4' G B 83 -2.201 -41.709 27.632 1.00 42.40 C
ATOM 8 O4' G B 83 -2.001 -40.275 27.725 1.00 37.71 O
ATOM 9 C3' G B 83 -2.242 -41.971 26.136 1.00 41.37 C
ATOM 10 O3' G B 83 -2.867 -43.196 25.805 1.00 43.08 O
ATOM 11 C2' G B 83 -2.982 -40.749 25.614 1.00 41.63 C
ATOM 12 O2' G B 83 -4.377 -40.873 25.845 1.00 41.28 O
ATOM 13 C1' G B 83 -2.437 -39.655 26.532 1.00 34.28 C
ATOM 14 N9 G B 83 -1.298 -38.942 25.926 1.00 35.47 N
ATOM 15 C8 G B 83 0.023 -38.964 26.305 1.00 36.06 C
ATOM 16 N7 G B 83 0.781 -38.208 25.554 1.00 35.02 N
ATOM 17 C5 G B 83 -0.094 -37.654 24.624 1.00 35.48 C
ATOM 18 C6 G B 83 0.136 -36.754 23.551 1.00 34.73 C
ATOM 19 O6 G B 83 1.201 -36.240 23.186 1.00 39.09 O
ATOM 20 N1 G B 83 -1.037 -36.457 22.867 1.00 34.42 N
ATOM 21 C2 G B 83 -2.279 -36.959 23.170 1.00 37.93 C
ATOM 22 N2 G B 83 -3.297 -36.556 22.392 1.00 37.04 N
ATOM 23 N3 G B 83 -2.507 -37.797 24.166 1.00 36.58 N
ATOM 24 C4 G B 83 -1.379 -38.098 24.844 1.00 37.28 C
ATOM 25 P C B 84 -2.368 -44.035 24.531 1.00 47.83 P
ATOM 26 OP1 C B 84 -3.120 -45.315 24.529 1.00 42.06 O
ATOM 27 OP2 C B 84 -0.885 -44.077 24.591 1.00 39.81 O
ATOM 28 O5' C B 84 -2.833 -43.130 23.307 1.00 52.12 O
TER
Atoms:
OP1: (3.156,-30.565,12.248)
OP2: (3.932,-31.396,14.535)
C3': (-1.232,-32.032,14.077)
C1': (-1.142,-34.181,15.076)
C5': (0.804,-32.504,12.587)
O4': (-0.264,-34.171,13.974)
C8: (0.938,-33.692,16.502)
O2': (-3.254,-33.348,14.308)
C6: (0.189,-34.910,19.706)
C5: (0.348,-34.470,18.381)
C4: (-0.721,-34.686,17.528)
P: (3.178,-31.633,13.277)
C4': (-0.502,-32.999,13.154)
C2': (-2.057,-32.957,14.964)
C2: (-1.926,-35.640,19.105)
N1: (-0.980,-35.501,20.040)
N3: (-1.899,-35.269,17.826)
N6: (1.127,-34.777,20.644)
N7: (1.396,-33.840,17.724)
N9: (-0.338,-34.173,16.315)
O5': (1.692,-32.092,13.614)
O3': (-2.014,-31.084,13.368)
OP2: (3.932,-31.396,14.535)
C3': (-1.232,-32.032,14.077)
C1': (-1.142,-34.181,15.076)
C5': (0.804,-32.504,12.587)
O4': (-0.264,-34.171,13.974)
C8: (0.938,-33.692,16.502)
O2': (-3.254,-33.348,14.308)
C6: (0.189,-34.910,19.706)
C5: (0.348,-34.470,18.381)
C4: (-0.721,-34.686,17.528)
P: (3.178,-31.633,13.277)
C4': (-0.502,-32.999,13.154)
C2': (-2.057,-32.957,14.964)
C2: (-1.926,-35.640,19.105)
N1: (-0.980,-35.501,20.040)
N3: (-1.899,-35.269,17.826)
N6: (1.127,-34.777,20.644)
N7: (1.396,-33.840,17.724)
N9: (-0.338,-34.173,16.315)
O5': (1.692,-32.092,13.614)
O3': (-2.014,-31.084,13.368)
OP1: (1.342,-44.053,28.972)
OP2: (2.691,-42.061,28.120)
C3': (-2.242,-41.971,26.136)
C1': (-2.437,-39.655,26.532)
C5': (-1.128,-42.434,28.408)
O6: (1.201,-36.240,23.186)
O4': (-2.001,-40.275,27.725)
C8: (0.023,-38.964,26.305)
C2: (-2.279,-36.959,23.170)
C6: (0.136,-36.754,23.551)
C5: (-0.094,-37.654,24.624)
C4: (-1.379,-38.098,24.844)
P: (1.462,-42.590,28.760)
C4': (-2.201,-41.709,27.632)
C2': (-2.982,-40.749,25.614)
O2': (-4.377,-40.873,25.845)
N1: (-1.037,-36.457,22.867)
N2: (-3.297,-36.556,22.392)
N3: (-2.507,-37.797,24.166)
N7: (0.781,-38.208,25.554)
N9: (-1.298,-38.942,25.926)
O5': (0.175,-42.047,27.996)
O3': (-2.867,-43.196,25.805)
OP2: (2.691,-42.061,28.120)
C3': (-2.242,-41.971,26.136)
C1': (-2.437,-39.655,26.532)
C5': (-1.128,-42.434,28.408)
O6: (1.201,-36.240,23.186)
O4': (-2.001,-40.275,27.725)
C8: (0.023,-38.964,26.305)
C2: (-2.279,-36.959,23.170)
C6: (0.136,-36.754,23.551)
C5: (-0.094,-37.654,24.624)
C4: (-1.379,-38.098,24.844)
P: (1.462,-42.590,28.760)
C4': (-2.201,-41.709,27.632)
C2': (-2.982,-40.749,25.614)
O2': (-4.377,-40.873,25.845)
N1: (-1.037,-36.457,22.867)
N2: (-3.297,-36.556,22.392)
N3: (-2.507,-37.797,24.166)
N7: (0.781,-38.208,25.554)
N9: (-1.298,-38.942,25.926)
O5': (0.175,-42.047,27.996)
O3': (-2.867,-43.196,25.805)
Image (generated by PyMOL):