Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B43:B62
Extra
PDB:
ATOM 1 O3' A A 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 2 P A A 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 3 OP1 A A 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 4 OP2 A A 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 5 O5' A A 43 -15.359 35.493 19.860 1.00 75.99 O
ATOM 6 C5' A A 43 -15.766 36.077 21.094 1.00 72.16 C
ATOM 7 C4' A A 43 -16.854 37.081 20.835 1.00 70.00 C
ATOM 8 O4' A A 43 -16.309 38.194 20.096 1.00 70.65 O
ATOM 9 C3' A A 43 -17.964 36.540 19.960 1.00 69.77 C
ATOM 10 O3' A A 43 -18.927 35.857 20.734 1.00 69.86 O
ATOM 11 C2' A A 43 -18.503 37.781 19.266 1.00 69.59 C
ATOM 12 O2' A A 43 -19.443 38.478 20.044 1.00 68.26 O
ATOM 13 C1' A A 43 -17.234 38.618 19.108 1.00 71.04 C
ATOM 14 N9 A A 43 -16.596 38.442 17.803 1.00 72.54 N
ATOM 15 C8 A A 43 -15.501 37.663 17.508 1.00 73.01 C
ATOM 16 N7 A A 43 -15.147 37.706 16.249 1.00 72.84 N
ATOM 17 C5 A A 43 -16.070 38.569 15.675 1.00 72.25 C
ATOM 18 C6 A A 43 -16.242 39.022 14.367 1.00 71.83 C
ATOM 19 N6 A A 43 -15.459 38.658 13.352 1.00 72.70 N
ATOM 20 N1 A A 43 -17.259 39.870 14.125 1.00 71.37 N
ATOM 21 C2 A A 43 -18.046 40.232 15.139 1.00 70.51 C
ATOM 22 N3 A A 43 -17.991 39.871 16.414 1.00 71.33 N
ATOM 23 C4 A A 43 -16.968 39.028 16.620 1.00 71.95 C
ATOM 24 P C A 44 -19.836 34.733 20.046 1.00 69.72 P
ATOM 25 OP1 C A 44 -20.898 34.401 21.034 1.00 70.29 O
ATOM 26 OP2 C A 44 -18.968 33.660 19.495 1.00 70.03 O
ATOM 27 O5' C A 44 -20.535 35.500 18.847 1.00 68.29 O
TER
ATOM 1 O3' G B 61 -19.072 41.173 3.338 1.00 62.97 O
ATOM 2 P G B 62 -18.659 42.673 3.752 1.00 62.35 P
ATOM 3 OP1 G B 62 -19.215 43.563 2.705 1.00 62.98 O
ATOM 4 OP2 G B 62 -17.192 42.685 4.026 1.00 58.35 O
ATOM 5 O5' G B 62 -19.497 42.943 5.079 1.00 60.68 O
ATOM 6 C5' G B 62 -20.909 42.992 5.009 1.00 63.13 C
ATOM 7 C4' G B 62 -21.468 43.638 6.245 1.00 65.63 C
ATOM 8 O4' G B 62 -21.272 42.693 7.310 1.00 65.71 O
ATOM 9 C3' G B 62 -20.827 44.976 6.666 1.00 67.33 C
ATOM 10 O3' G B 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 11 C2' G B 62 -19.980 44.636 7.877 1.00 67.31 C
ATOM 12 O2' G B 62 -20.291 45.593 8.876 1.00 69.49 O
ATOM 13 C1' G B 62 -20.579 43.317 8.358 1.00 66.86 C
ATOM 14 N9 G B 62 -19.440 42.496 8.717 1.00 65.00 N
ATOM 15 C8 G B 62 -18.356 42.243 7.927 1.00 64.06 C
ATOM 16 N7 G B 62 -17.429 41.565 8.538 1.00 63.80 N
ATOM 17 C5 G B 62 -17.943 41.356 9.811 1.00 63.55 C
ATOM 18 C6 G B 62 -17.385 40.706 10.925 1.00 63.40 C
ATOM 19 O6 G B 62 -16.267 40.180 11.036 1.00 63.64 O
ATOM 20 N1 G B 62 -18.265 40.706 12.003 1.00 64.11 N
ATOM 21 C2 G B 62 -19.521 41.276 12.009 1.00 63.61 C
ATOM 22 N2 G B 62 -20.223 41.196 13.155 1.00 62.60 N
ATOM 23 N3 G B 62 -20.045 41.887 10.974 1.00 62.63 N
ATOM 24 C4 G B 62 -19.205 41.898 9.918 1.00 63.84 C
ATOM 25 P U B 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 26 OP1 U B 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 27 OP2 U B 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 28 O5' U B 63 -23.130 47.739 6.287 1.00 72.29 O
TER
ATOM 2 P A A 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 3 OP1 A A 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 4 OP2 A A 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 5 O5' A A 43 -15.359 35.493 19.860 1.00 75.99 O
ATOM 6 C5' A A 43 -15.766 36.077 21.094 1.00 72.16 C
ATOM 7 C4' A A 43 -16.854 37.081 20.835 1.00 70.00 C
ATOM 8 O4' A A 43 -16.309 38.194 20.096 1.00 70.65 O
ATOM 9 C3' A A 43 -17.964 36.540 19.960 1.00 69.77 C
ATOM 10 O3' A A 43 -18.927 35.857 20.734 1.00 69.86 O
ATOM 11 C2' A A 43 -18.503 37.781 19.266 1.00 69.59 C
ATOM 12 O2' A A 43 -19.443 38.478 20.044 1.00 68.26 O
ATOM 13 C1' A A 43 -17.234 38.618 19.108 1.00 71.04 C
ATOM 14 N9 A A 43 -16.596 38.442 17.803 1.00 72.54 N
ATOM 15 C8 A A 43 -15.501 37.663 17.508 1.00 73.01 C
ATOM 16 N7 A A 43 -15.147 37.706 16.249 1.00 72.84 N
ATOM 17 C5 A A 43 -16.070 38.569 15.675 1.00 72.25 C
ATOM 18 C6 A A 43 -16.242 39.022 14.367 1.00 71.83 C
ATOM 19 N6 A A 43 -15.459 38.658 13.352 1.00 72.70 N
ATOM 20 N1 A A 43 -17.259 39.870 14.125 1.00 71.37 N
ATOM 21 C2 A A 43 -18.046 40.232 15.139 1.00 70.51 C
ATOM 22 N3 A A 43 -17.991 39.871 16.414 1.00 71.33 N
ATOM 23 C4 A A 43 -16.968 39.028 16.620 1.00 71.95 C
ATOM 24 P C A 44 -19.836 34.733 20.046 1.00 69.72 P
ATOM 25 OP1 C A 44 -20.898 34.401 21.034 1.00 70.29 O
ATOM 26 OP2 C A 44 -18.968 33.660 19.495 1.00 70.03 O
ATOM 27 O5' C A 44 -20.535 35.500 18.847 1.00 68.29 O
TER
ATOM 1 O3' G B 61 -19.072 41.173 3.338 1.00 62.97 O
ATOM 2 P G B 62 -18.659 42.673 3.752 1.00 62.35 P
ATOM 3 OP1 G B 62 -19.215 43.563 2.705 1.00 62.98 O
ATOM 4 OP2 G B 62 -17.192 42.685 4.026 1.00 58.35 O
ATOM 5 O5' G B 62 -19.497 42.943 5.079 1.00 60.68 O
ATOM 6 C5' G B 62 -20.909 42.992 5.009 1.00 63.13 C
ATOM 7 C4' G B 62 -21.468 43.638 6.245 1.00 65.63 C
ATOM 8 O4' G B 62 -21.272 42.693 7.310 1.00 65.71 O
ATOM 9 C3' G B 62 -20.827 44.976 6.666 1.00 67.33 C
ATOM 10 O3' G B 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 11 C2' G B 62 -19.980 44.636 7.877 1.00 67.31 C
ATOM 12 O2' G B 62 -20.291 45.593 8.876 1.00 69.49 O
ATOM 13 C1' G B 62 -20.579 43.317 8.358 1.00 66.86 C
ATOM 14 N9 G B 62 -19.440 42.496 8.717 1.00 65.00 N
ATOM 15 C8 G B 62 -18.356 42.243 7.927 1.00 64.06 C
ATOM 16 N7 G B 62 -17.429 41.565 8.538 1.00 63.80 N
ATOM 17 C5 G B 62 -17.943 41.356 9.811 1.00 63.55 C
ATOM 18 C6 G B 62 -17.385 40.706 10.925 1.00 63.40 C
ATOM 19 O6 G B 62 -16.267 40.180 11.036 1.00 63.64 O
ATOM 20 N1 G B 62 -18.265 40.706 12.003 1.00 64.11 N
ATOM 21 C2 G B 62 -19.521 41.276 12.009 1.00 63.61 C
ATOM 22 N2 G B 62 -20.223 41.196 13.155 1.00 62.60 N
ATOM 23 N3 G B 62 -20.045 41.887 10.974 1.00 62.63 N
ATOM 24 C4 G B 62 -19.205 41.898 9.918 1.00 63.84 C
ATOM 25 P U B 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 26 OP1 U B 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 27 OP2 U B 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 28 O5' U B 63 -23.130 47.739 6.287 1.00 72.29 O
TER
Atoms:
OP1: (-14.773,33.222,20.785)
OP2: (-14.200,33.901,18.366)
C3': (-17.964,36.540,19.960)
C1': (-17.234,38.618,19.108)
C5': (-15.766,36.077,21.094)
O4': (-16.309,38.194,20.096)
C8: (-15.501,37.663,17.508)
O2': (-19.443,38.478,20.044)
C6: (-16.242,39.022,14.367)
C5: (-16.070,38.569,15.675)
C4: (-16.968,39.028,16.620)
P: (-14.347,34.262,19.802)
C4': (-16.854,37.081,20.835)
C2': (-18.503,37.781,19.266)
C2: (-18.046,40.232,15.139)
N1: (-17.259,39.870,14.125)
N3: (-17.991,39.871,16.414)
N6: (-15.459,38.658,13.352)
N7: (-15.147,37.706,16.249)
N9: (-16.596,38.442,17.803)
O5': (-15.359,35.493,19.860)
O3': (-18.927,35.857,20.734)
OP2: (-14.200,33.901,18.366)
C3': (-17.964,36.540,19.960)
C1': (-17.234,38.618,19.108)
C5': (-15.766,36.077,21.094)
O4': (-16.309,38.194,20.096)
C8: (-15.501,37.663,17.508)
O2': (-19.443,38.478,20.044)
C6: (-16.242,39.022,14.367)
C5: (-16.070,38.569,15.675)
C4: (-16.968,39.028,16.620)
P: (-14.347,34.262,19.802)
C4': (-16.854,37.081,20.835)
C2': (-18.503,37.781,19.266)
C2: (-18.046,40.232,15.139)
N1: (-17.259,39.870,14.125)
N3: (-17.991,39.871,16.414)
N6: (-15.459,38.658,13.352)
N7: (-15.147,37.706,16.249)
N9: (-16.596,38.442,17.803)
O5': (-15.359,35.493,19.860)
O3': (-18.927,35.857,20.734)
OP1: (-19.215,43.563,2.705)
OP2: (-17.192,42.685,4.026)
C3': (-20.827,44.976,6.666)
C1': (-20.579,43.317,8.358)
C5': (-20.909,42.992,5.009)
O6: (-16.267,40.180,11.036)
O4': (-21.272,42.693,7.310)
C8: (-18.356,42.243,7.927)
C2: (-19.521,41.276,12.009)
C6: (-17.385,40.706,10.925)
C5: (-17.943,41.356,9.811)
C4: (-19.205,41.898,9.918)
P: (-18.659,42.673,3.752)
C4': (-21.468,43.638,6.245)
C2': (-19.980,44.636,7.877)
O2': (-20.291,45.593,8.876)
N1: (-18.265,40.706,12.003)
N2: (-20.223,41.196,13.155)
N3: (-20.045,41.887,10.974)
N7: (-17.429,41.565,8.538)
N9: (-19.440,42.496,8.717)
O5': (-19.497,42.943,5.079)
O3': (-21.688,45.946,7.235)
OP2: (-17.192,42.685,4.026)
C3': (-20.827,44.976,6.666)
C1': (-20.579,43.317,8.358)
C5': (-20.909,42.992,5.009)
O6: (-16.267,40.180,11.036)
O4': (-21.272,42.693,7.310)
C8: (-18.356,42.243,7.927)
C2: (-19.521,41.276,12.009)
C6: (-17.385,40.706,10.925)
C5: (-17.943,41.356,9.811)
C4: (-19.205,41.898,9.918)
P: (-18.659,42.673,3.752)
C4': (-21.468,43.638,6.245)
C2': (-19.980,44.636,7.877)
O2': (-20.291,45.593,8.876)
N1: (-18.265,40.706,12.003)
N2: (-20.223,41.196,13.155)
N3: (-20.045,41.887,10.974)
N7: (-17.429,41.565,8.538)
N9: (-19.440,42.496,8.717)
O5': (-19.497,42.943,5.079)
O3': (-21.688,45.946,7.235)
Image (generated by PyMOL):