Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A51:A25
Extra
PDB:
ATOM 1 O3' A A 50 -3.414 9.273 38.666 1.00 36.77 O
ATOM 2 P A A 51 -3.591 10.448 37.585 1.00 42.94 P
ATOM 3 OP1 A A 51 -3.435 11.735 38.308 1.00 36.09 O
ATOM 4 OP2 A A 51 -4.860 10.187 36.857 1.00 37.04 O
ATOM 5 O5' A A 51 -2.350 10.218 36.614 1.00 35.02 O
ATOM 6 C5' A A 51 -1.023 10.310 37.107 1.00 34.48 C
ATOM 7 C4' A A 51 -0.006 9.946 36.056 1.00 36.50 C
ATOM 8 O4' A A 51 -0.095 8.531 35.741 1.00 37.20 O
ATOM 9 C3' A A 51 -0.158 10.618 34.703 1.00 36.39 C
ATOM 10 O3' A A 51 0.299 11.959 34.686 1.00 45.49 O
ATOM 11 C2' A A 51 0.636 9.685 33.802 1.00 38.00 C
ATOM 12 O2' A A 51 2.032 9.871 33.994 1.00 35.67 O
ATOM 13 C1' A A 51 0.250 8.326 34.383 1.00 37.86 C
ATOM 14 N9 A A 51 -0.910 7.747 33.681 1.00 35.24 N
ATOM 15 C8 A A 51 -2.241 7.854 34.002 1.00 34.38 C
ATOM 16 N7 A A 51 -3.032 7.228 33.164 1.00 34.72 N
ATOM 17 C5 A A 51 -2.163 6.680 32.228 1.00 33.29 C
ATOM 18 C6 A A 51 -2.373 5.898 31.077 1.00 31.13 C
ATOM 19 N6 A A 51 -3.579 5.513 30.655 1.00 28.90 N
ATOM 20 N1 A A 51 -1.288 5.520 30.363 1.00 29.18 N
ATOM 21 C2 A A 51 -0.076 5.904 30.782 1.00 29.87 C
ATOM 22 N3 A A 51 0.248 6.638 31.846 1.00 33.48 N
ATOM 23 C4 A A 51 -0.852 6.996 32.533 1.00 32.17 C
ATOM 24 P C A 52 -0.361 13.027 33.675 1.00 43.74 P
ATOM 25 OP1 C A 52 0.275 14.337 33.950 1.00 45.76 O
ATOM 26 OP2 C A 52 -1.836 12.907 33.807 1.00 38.33 O
ATOM 27 O5' C A 52 0.097 12.491 32.250 1.00 36.21 O
TER
ATOM 1 O3' U B 24 -4.260 -2.753 22.282 1.00 27.43 O
ATOM 2 P G B 25 -3.606 -3.309 23.643 1.00 25.51 P
ATOM 3 OP1 G B 25 -3.052 -4.648 23.341 1.00 28.79 O
ATOM 4 OP2 G B 25 -4.630 -3.185 24.706 1.00 25.86 O
ATOM 5 O5' G B 25 -2.421 -2.285 23.911 1.00 26.53 O
ATOM 6 C5' G B 25 -1.247 -2.322 23.118 1.00 27.50 C
ATOM 7 C4' G B 25 -0.294 -1.212 23.477 1.00 28.41 C
ATOM 8 O4' G B 25 -0.929 0.079 23.281 1.00 28.38 O
ATOM 9 C3' G B 25 0.168 -1.159 24.921 1.00 23.89 C
ATOM 10 O3' G B 25 1.152 -2.127 25.234 1.00 25.05 O
ATOM 11 C2' G B 25 0.662 0.275 25.031 1.00 26.89 C
ATOM 12 O2' G B 25 1.912 0.427 24.376 1.00 27.75 O
ATOM 13 C1' G B 25 -0.402 1.006 24.211 1.00 27.07 C
ATOM 14 N9 G B 25 -1.494 1.491 25.071 1.00 28.98 N
ATOM 15 C8 G B 25 -2.790 1.047 25.186 1.00 27.50 C
ATOM 16 N7 G B 25 -3.467 1.712 26.086 1.00 28.62 N
ATOM 17 C5 G B 25 -2.560 2.635 26.598 1.00 28.01 C
ATOM 18 C6 G B 25 -2.697 3.629 27.604 1.00 27.77 C
ATOM 19 O6 G B 25 -3.695 3.920 28.276 1.00 30.23 O
ATOM 20 N1 G B 25 -1.511 4.330 27.797 1.00 26.38 N
ATOM 21 C2 G B 25 -0.340 4.111 27.114 1.00 28.43 C
ATOM 22 N2 G B 25 0.701 4.891 27.439 1.00 29.75 N
ATOM 23 N3 G B 25 -0.197 3.188 26.181 1.00 27.94 N
ATOM 24 C4 G B 25 -1.339 2.500 25.980 1.00 26.52 C
ATOM 25 P U B 26 1.242 -2.728 26.725 1.00 27.25 P
ATOM 26 OP1 U B 26 2.321 -3.747 26.723 1.00 27.36 O
ATOM 27 OP2 U B 26 -0.129 -3.141 27.113 1.00 27.02 O
ATOM 28 O5' U B 26 1.690 -1.468 27.587 1.00 26.43 O
TER
ATOM 2 P A A 51 -3.591 10.448 37.585 1.00 42.94 P
ATOM 3 OP1 A A 51 -3.435 11.735 38.308 1.00 36.09 O
ATOM 4 OP2 A A 51 -4.860 10.187 36.857 1.00 37.04 O
ATOM 5 O5' A A 51 -2.350 10.218 36.614 1.00 35.02 O
ATOM 6 C5' A A 51 -1.023 10.310 37.107 1.00 34.48 C
ATOM 7 C4' A A 51 -0.006 9.946 36.056 1.00 36.50 C
ATOM 8 O4' A A 51 -0.095 8.531 35.741 1.00 37.20 O
ATOM 9 C3' A A 51 -0.158 10.618 34.703 1.00 36.39 C
ATOM 10 O3' A A 51 0.299 11.959 34.686 1.00 45.49 O
ATOM 11 C2' A A 51 0.636 9.685 33.802 1.00 38.00 C
ATOM 12 O2' A A 51 2.032 9.871 33.994 1.00 35.67 O
ATOM 13 C1' A A 51 0.250 8.326 34.383 1.00 37.86 C
ATOM 14 N9 A A 51 -0.910 7.747 33.681 1.00 35.24 N
ATOM 15 C8 A A 51 -2.241 7.854 34.002 1.00 34.38 C
ATOM 16 N7 A A 51 -3.032 7.228 33.164 1.00 34.72 N
ATOM 17 C5 A A 51 -2.163 6.680 32.228 1.00 33.29 C
ATOM 18 C6 A A 51 -2.373 5.898 31.077 1.00 31.13 C
ATOM 19 N6 A A 51 -3.579 5.513 30.655 1.00 28.90 N
ATOM 20 N1 A A 51 -1.288 5.520 30.363 1.00 29.18 N
ATOM 21 C2 A A 51 -0.076 5.904 30.782 1.00 29.87 C
ATOM 22 N3 A A 51 0.248 6.638 31.846 1.00 33.48 N
ATOM 23 C4 A A 51 -0.852 6.996 32.533 1.00 32.17 C
ATOM 24 P C A 52 -0.361 13.027 33.675 1.00 43.74 P
ATOM 25 OP1 C A 52 0.275 14.337 33.950 1.00 45.76 O
ATOM 26 OP2 C A 52 -1.836 12.907 33.807 1.00 38.33 O
ATOM 27 O5' C A 52 0.097 12.491 32.250 1.00 36.21 O
TER
ATOM 1 O3' U B 24 -4.260 -2.753 22.282 1.00 27.43 O
ATOM 2 P G B 25 -3.606 -3.309 23.643 1.00 25.51 P
ATOM 3 OP1 G B 25 -3.052 -4.648 23.341 1.00 28.79 O
ATOM 4 OP2 G B 25 -4.630 -3.185 24.706 1.00 25.86 O
ATOM 5 O5' G B 25 -2.421 -2.285 23.911 1.00 26.53 O
ATOM 6 C5' G B 25 -1.247 -2.322 23.118 1.00 27.50 C
ATOM 7 C4' G B 25 -0.294 -1.212 23.477 1.00 28.41 C
ATOM 8 O4' G B 25 -0.929 0.079 23.281 1.00 28.38 O
ATOM 9 C3' G B 25 0.168 -1.159 24.921 1.00 23.89 C
ATOM 10 O3' G B 25 1.152 -2.127 25.234 1.00 25.05 O
ATOM 11 C2' G B 25 0.662 0.275 25.031 1.00 26.89 C
ATOM 12 O2' G B 25 1.912 0.427 24.376 1.00 27.75 O
ATOM 13 C1' G B 25 -0.402 1.006 24.211 1.00 27.07 C
ATOM 14 N9 G B 25 -1.494 1.491 25.071 1.00 28.98 N
ATOM 15 C8 G B 25 -2.790 1.047 25.186 1.00 27.50 C
ATOM 16 N7 G B 25 -3.467 1.712 26.086 1.00 28.62 N
ATOM 17 C5 G B 25 -2.560 2.635 26.598 1.00 28.01 C
ATOM 18 C6 G B 25 -2.697 3.629 27.604 1.00 27.77 C
ATOM 19 O6 G B 25 -3.695 3.920 28.276 1.00 30.23 O
ATOM 20 N1 G B 25 -1.511 4.330 27.797 1.00 26.38 N
ATOM 21 C2 G B 25 -0.340 4.111 27.114 1.00 28.43 C
ATOM 22 N2 G B 25 0.701 4.891 27.439 1.00 29.75 N
ATOM 23 N3 G B 25 -0.197 3.188 26.181 1.00 27.94 N
ATOM 24 C4 G B 25 -1.339 2.500 25.980 1.00 26.52 C
ATOM 25 P U B 26 1.242 -2.728 26.725 1.00 27.25 P
ATOM 26 OP1 U B 26 2.321 -3.747 26.723 1.00 27.36 O
ATOM 27 OP2 U B 26 -0.129 -3.141 27.113 1.00 27.02 O
ATOM 28 O5' U B 26 1.690 -1.468 27.587 1.00 26.43 O
TER
Atoms:
OP1: (-3.435,11.735,38.308)
OP2: (-4.860,10.187,36.857)
C3': (-0.158,10.618,34.703)
C1': (0.250,8.326,34.383)
C5': (-1.023,10.310,37.107)
O4': (-0.095,8.531,35.741)
C8: (-2.241,7.854,34.002)
O2': (2.032,9.871,33.994)
C6: (-2.373,5.898,31.077)
C5: (-2.163,6.680,32.228)
C4: (-0.852,6.996,32.533)
P: (-3.591,10.448,37.585)
C4': (-0.006,9.946,36.056)
C2': (0.636,9.685,33.802)
C2: (-0.076,5.904,30.782)
N1: (-1.288,5.520,30.363)
N3: (0.248,6.638,31.846)
N6: (-3.579,5.513,30.655)
N7: (-3.032,7.228,33.164)
N9: (-0.910,7.747,33.681)
O5': (-2.350,10.218,36.614)
O3': (0.299,11.959,34.686)
OP2: (-4.860,10.187,36.857)
C3': (-0.158,10.618,34.703)
C1': (0.250,8.326,34.383)
C5': (-1.023,10.310,37.107)
O4': (-0.095,8.531,35.741)
C8: (-2.241,7.854,34.002)
O2': (2.032,9.871,33.994)
C6: (-2.373,5.898,31.077)
C5: (-2.163,6.680,32.228)
C4: (-0.852,6.996,32.533)
P: (-3.591,10.448,37.585)
C4': (-0.006,9.946,36.056)
C2': (0.636,9.685,33.802)
C2: (-0.076,5.904,30.782)
N1: (-1.288,5.520,30.363)
N3: (0.248,6.638,31.846)
N6: (-3.579,5.513,30.655)
N7: (-3.032,7.228,33.164)
N9: (-0.910,7.747,33.681)
O5': (-2.350,10.218,36.614)
O3': (0.299,11.959,34.686)
OP1: (-3.052,-4.648,23.341)
OP2: (-4.630,-3.185,24.706)
C3': (0.168,-1.159,24.921)
C1': (-0.402,1.006,24.211)
C5': (-1.247,-2.322,23.118)
O6: (-3.695,3.920,28.276)
O4': (-0.929,0.079,23.281)
C8: (-2.790,1.047,25.186)
C2: (-0.340,4.111,27.114)
C6: (-2.697,3.629,27.604)
C5: (-2.560,2.635,26.598)
C4: (-1.339,2.500,25.980)
P: (-3.606,-3.309,23.643)
C4': (-0.294,-1.212,23.477)
C2': (0.662,0.275,25.031)
O2': (1.912,0.427,24.376)
N1: (-1.511,4.330,27.797)
N2: (0.701,4.891,27.439)
N3: (-0.197,3.188,26.181)
N7: (-3.467,1.712,26.086)
N9: (-1.494,1.491,25.071)
O5': (-2.421,-2.285,23.911)
O3': (1.152,-2.127,25.234)
OP2: (-4.630,-3.185,24.706)
C3': (0.168,-1.159,24.921)
C1': (-0.402,1.006,24.211)
C5': (-1.247,-2.322,23.118)
O6: (-3.695,3.920,28.276)
O4': (-0.929,0.079,23.281)
C8: (-2.790,1.047,25.186)
C2: (-0.340,4.111,27.114)
C6: (-2.697,3.629,27.604)
C5: (-2.560,2.635,26.598)
C4: (-1.339,2.500,25.980)
P: (-3.606,-3.309,23.643)
C4': (-0.294,-1.212,23.477)
C2': (0.662,0.275,25.031)
O2': (1.912,0.427,24.376)
N1: (-1.511,4.330,27.797)
N2: (0.701,4.891,27.439)
N3: (-0.197,3.188,26.181)
N7: (-3.467,1.712,26.086)
N9: (-1.494,1.491,25.071)
O5': (-2.421,-2.285,23.911)
O3': (1.152,-2.127,25.234)
Image (generated by PyMOL):