Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02480:01925
Extra
PDB:
ATOM 1 O3' G A2479 88.652 116.609 104.859 1.00 47.70 O
ATOM 2 P G A2480 88.183 118.149 104.920 1.00 47.06 P
ATOM 3 OP1 G A2480 87.619 118.374 106.276 1.00 48.51 O
ATOM 4 OP2 G A2480 87.358 118.459 103.730 1.00 49.39 O
ATOM 5 O5' G A2480 89.534 118.985 104.802 1.00 44.84 O
ATOM 6 C5' G A2480 90.453 119.050 105.904 1.00 39.96 C
ATOM 7 C4' G A2480 91.623 119.945 105.576 1.00 36.56 C
ATOM 8 O4' G A2480 92.363 119.406 104.450 1.00 35.96 O
ATOM 9 C3' G A2480 91.310 121.360 105.129 1.00 35.32 C
ATOM 10 O3' G A2480 90.986 122.220 106.204 1.00 34.57 O
ATOM 11 C2' G A2480 92.616 121.756 104.462 1.00 35.22 C
ATOM 12 O2' G A2480 93.648 122.013 105.392 1.00 35.90 O
ATOM 13 C1' G A2480 92.960 120.469 103.721 1.00 34.69 C
ATOM 14 N9 G A2480 92.419 120.474 102.366 1.00 35.75 N
ATOM 15 C8 G A2480 91.295 119.827 101.915 1.00 36.16 C
ATOM 16 N7 G A2480 91.064 120.028 100.647 1.00 37.36 N
ATOM 17 C5 G A2480 92.096 120.859 100.235 1.00 36.46 C
ATOM 18 C6 G A2480 92.373 121.412 98.965 1.00 37.28 C
ATOM 19 O6 G A2480 91.742 121.273 97.907 1.00 38.96 O
ATOM 20 N1 G A2480 93.517 122.200 98.991 1.00 35.43 N
ATOM 21 C2 G A2480 94.292 122.425 100.090 1.00 35.59 C
ATOM 22 N2 G A2480 95.350 123.222 99.911 1.00 36.73 N
ATOM 23 N3 G A2480 94.050 121.909 101.280 1.00 36.11 N
ATOM 24 C4 G A2480 92.941 121.143 101.281 1.00 36.50 C
ATOM 25 P U A2481 90.116 123.537 105.922 1.00 37.97 P
ATOM 26 OP1 U A2481 89.997 124.294 107.197 1.00 37.87 O
ATOM 27 OP2 U A2481 88.890 123.129 105.199 1.00 39.74 O
ATOM 28 O5' U A2481 91.001 124.383 104.902 1.00 34.40 O
TER
ATOM 1 O3' A B1924 101.830 125.303 106.487 1.00 44.46 O
ATOM 2 P G B1925 101.201 126.766 106.320 1.00 45.51 P
ATOM 3 OP1 G B1925 102.176 127.626 105.603 1.00 45.91 O
ATOM 4 OP2 G B1925 100.693 127.174 107.658 1.00 40.87 O
ATOM 5 O5' G B1925 99.965 126.550 105.353 1.00 44.76 O
ATOM 6 C5' G B1925 98.634 126.614 105.856 1.00 47.66 C
ATOM 7 C4' G B1925 97.665 126.184 104.795 1.00 50.32 C
ATOM 8 O4' G B1925 97.613 127.165 103.745 1.00 50.58 O
ATOM 9 C3' G B1925 98.007 124.884 104.083 1.00 51.97 C
ATOM 10 O3' G B1925 97.603 123.893 105.053 1.00 52.62 O
ATOM 11 C2' G B1925 97.179 125.011 102.801 1.00 52.36 C
ATOM 12 O2' G B1925 95.849 124.605 103.027 1.00 59.37 O
ATOM 13 C1' G B1925 97.150 126.539 102.581 1.00 51.49 C
ATOM 14 N9 G B1925 97.826 127.142 101.435 1.00 51.88 N
ATOM 15 C8 G B1925 99.176 127.308 101.250 1.00 52.29 C
ATOM 16 N7 G B1925 99.471 127.885 100.114 1.00 50.85 N
ATOM 17 C5 G B1925 98.242 128.108 99.510 1.00 50.07 C
ATOM 18 C6 G B1925 97.926 128.674 98.252 1.00 50.12 C
ATOM 19 O6 G B1925 98.693 129.086 97.378 1.00 51.80 O
ATOM 20 N1 G B1925 96.556 128.732 98.046 1.00 49.29 N
ATOM 21 C2 G B1925 95.609 128.292 98.927 1.00 48.38 C
ATOM 22 N2 G B1925 94.339 128.455 98.554 1.00 48.86 N
ATOM 23 N3 G B1925 95.886 127.738 100.090 1.00 50.03 N
ATOM 24 C4 G B1925 97.215 127.676 100.317 1.00 51.18 C
ATOM 25 P U B1926 97.455 122.324 104.700 1.00 50.77 P
ATOM 26 OP1 U B1926 96.028 122.100 104.390 1.00 51.08 O
ATOM 27 OP2 U B1926 98.066 121.619 105.855 1.00 54.80 O
ATOM 28 O5' U B1926 98.347 121.983 103.427 1.00 49.78 O
TER
ATOM 2 P G A2480 88.183 118.149 104.920 1.00 47.06 P
ATOM 3 OP1 G A2480 87.619 118.374 106.276 1.00 48.51 O
ATOM 4 OP2 G A2480 87.358 118.459 103.730 1.00 49.39 O
ATOM 5 O5' G A2480 89.534 118.985 104.802 1.00 44.84 O
ATOM 6 C5' G A2480 90.453 119.050 105.904 1.00 39.96 C
ATOM 7 C4' G A2480 91.623 119.945 105.576 1.00 36.56 C
ATOM 8 O4' G A2480 92.363 119.406 104.450 1.00 35.96 O
ATOM 9 C3' G A2480 91.310 121.360 105.129 1.00 35.32 C
ATOM 10 O3' G A2480 90.986 122.220 106.204 1.00 34.57 O
ATOM 11 C2' G A2480 92.616 121.756 104.462 1.00 35.22 C
ATOM 12 O2' G A2480 93.648 122.013 105.392 1.00 35.90 O
ATOM 13 C1' G A2480 92.960 120.469 103.721 1.00 34.69 C
ATOM 14 N9 G A2480 92.419 120.474 102.366 1.00 35.75 N
ATOM 15 C8 G A2480 91.295 119.827 101.915 1.00 36.16 C
ATOM 16 N7 G A2480 91.064 120.028 100.647 1.00 37.36 N
ATOM 17 C5 G A2480 92.096 120.859 100.235 1.00 36.46 C
ATOM 18 C6 G A2480 92.373 121.412 98.965 1.00 37.28 C
ATOM 19 O6 G A2480 91.742 121.273 97.907 1.00 38.96 O
ATOM 20 N1 G A2480 93.517 122.200 98.991 1.00 35.43 N
ATOM 21 C2 G A2480 94.292 122.425 100.090 1.00 35.59 C
ATOM 22 N2 G A2480 95.350 123.222 99.911 1.00 36.73 N
ATOM 23 N3 G A2480 94.050 121.909 101.280 1.00 36.11 N
ATOM 24 C4 G A2480 92.941 121.143 101.281 1.00 36.50 C
ATOM 25 P U A2481 90.116 123.537 105.922 1.00 37.97 P
ATOM 26 OP1 U A2481 89.997 124.294 107.197 1.00 37.87 O
ATOM 27 OP2 U A2481 88.890 123.129 105.199 1.00 39.74 O
ATOM 28 O5' U A2481 91.001 124.383 104.902 1.00 34.40 O
TER
ATOM 1 O3' A B1924 101.830 125.303 106.487 1.00 44.46 O
ATOM 2 P G B1925 101.201 126.766 106.320 1.00 45.51 P
ATOM 3 OP1 G B1925 102.176 127.626 105.603 1.00 45.91 O
ATOM 4 OP2 G B1925 100.693 127.174 107.658 1.00 40.87 O
ATOM 5 O5' G B1925 99.965 126.550 105.353 1.00 44.76 O
ATOM 6 C5' G B1925 98.634 126.614 105.856 1.00 47.66 C
ATOM 7 C4' G B1925 97.665 126.184 104.795 1.00 50.32 C
ATOM 8 O4' G B1925 97.613 127.165 103.745 1.00 50.58 O
ATOM 9 C3' G B1925 98.007 124.884 104.083 1.00 51.97 C
ATOM 10 O3' G B1925 97.603 123.893 105.053 1.00 52.62 O
ATOM 11 C2' G B1925 97.179 125.011 102.801 1.00 52.36 C
ATOM 12 O2' G B1925 95.849 124.605 103.027 1.00 59.37 O
ATOM 13 C1' G B1925 97.150 126.539 102.581 1.00 51.49 C
ATOM 14 N9 G B1925 97.826 127.142 101.435 1.00 51.88 N
ATOM 15 C8 G B1925 99.176 127.308 101.250 1.00 52.29 C
ATOM 16 N7 G B1925 99.471 127.885 100.114 1.00 50.85 N
ATOM 17 C5 G B1925 98.242 128.108 99.510 1.00 50.07 C
ATOM 18 C6 G B1925 97.926 128.674 98.252 1.00 50.12 C
ATOM 19 O6 G B1925 98.693 129.086 97.378 1.00 51.80 O
ATOM 20 N1 G B1925 96.556 128.732 98.046 1.00 49.29 N
ATOM 21 C2 G B1925 95.609 128.292 98.927 1.00 48.38 C
ATOM 22 N2 G B1925 94.339 128.455 98.554 1.00 48.86 N
ATOM 23 N3 G B1925 95.886 127.738 100.090 1.00 50.03 N
ATOM 24 C4 G B1925 97.215 127.676 100.317 1.00 51.18 C
ATOM 25 P U B1926 97.455 122.324 104.700 1.00 50.77 P
ATOM 26 OP1 U B1926 96.028 122.100 104.390 1.00 51.08 O
ATOM 27 OP2 U B1926 98.066 121.619 105.855 1.00 54.80 O
ATOM 28 O5' U B1926 98.347 121.983 103.427 1.00 49.78 O
TER
Atoms:
OP1: (87.619,118.374,106.276)
OP2: (87.358,118.459,103.730)
C3': (91.310,121.360,105.129)
C1': (92.960,120.469,103.721)
C5': (90.453,119.050,105.904)
O6: (91.742,121.273,97.907)
O4': (92.363,119.406,104.450)
C8: (91.295,119.827,101.915)
C2: (94.292,122.425,100.090)
C6: (92.373,121.412,98.965)
C5: (92.096,120.859,100.235)
C4: (92.941,121.143,101.281)
P: (88.183,118.149,104.920)
C4': (91.623,119.945,105.576)
C2': (92.616,121.756,104.462)
O2': (93.648,122.013,105.392)
N1: (93.517,122.200,98.991)
N2: (95.350,123.222,99.911)
N3: (94.050,121.909,101.280)
N7: (91.064,120.028,100.647)
N9: (92.419,120.474,102.366)
O5': (89.534,118.985,104.802)
O3': (90.986,122.220,106.204)
OP2: (87.358,118.459,103.730)
C3': (91.310,121.360,105.129)
C1': (92.960,120.469,103.721)
C5': (90.453,119.050,105.904)
O6: (91.742,121.273,97.907)
O4': (92.363,119.406,104.450)
C8: (91.295,119.827,101.915)
C2: (94.292,122.425,100.090)
C6: (92.373,121.412,98.965)
C5: (92.096,120.859,100.235)
C4: (92.941,121.143,101.281)
P: (88.183,118.149,104.920)
C4': (91.623,119.945,105.576)
C2': (92.616,121.756,104.462)
O2': (93.648,122.013,105.392)
N1: (93.517,122.200,98.991)
N2: (95.350,123.222,99.911)
N3: (94.050,121.909,101.280)
N7: (91.064,120.028,100.647)
N9: (92.419,120.474,102.366)
O5': (89.534,118.985,104.802)
O3': (90.986,122.220,106.204)
OP1: (102.176,127.626,105.603)
OP2: (100.693,127.174,107.658)
C3': (98.007,124.884,104.083)
C1': (97.150,126.539,102.581)
C5': (98.634,126.614,105.856)
O6: (98.693,129.086,97.378)
O4': (97.613,127.165,103.745)
C8: (99.176,127.308,101.250)
C2: (95.609,128.292,98.927)
C6: (97.926,128.674,98.252)
C5: (98.242,128.108,99.510)
C4: (97.215,127.676,100.317)
P: (101.201,126.766,106.320)
C4': (97.665,126.184,104.795)
C2': (97.179,125.011,102.801)
O2': (95.849,124.605,103.027)
N1: (96.556,128.732,98.046)
N2: (94.339,128.455,98.554)
N3: (95.886,127.738,100.090)
N7: (99.471,127.885,100.114)
N9: (97.826,127.142,101.435)
O5': (99.965,126.550,105.353)
O3': (97.603,123.893,105.053)
OP2: (100.693,127.174,107.658)
C3': (98.007,124.884,104.083)
C1': (97.150,126.539,102.581)
C5': (98.634,126.614,105.856)
O6: (98.693,129.086,97.378)
O4': (97.613,127.165,103.745)
C8: (99.176,127.308,101.250)
C2: (95.609,128.292,98.927)
C6: (97.926,128.674,98.252)
C5: (98.242,128.108,99.510)
C4: (97.215,127.676,100.317)
P: (101.201,126.766,106.320)
C4': (97.665,126.184,104.795)
C2': (97.179,125.011,102.801)
O2': (95.849,124.605,103.027)
N1: (96.556,128.732,98.046)
N2: (94.339,128.455,98.554)
N3: (95.886,127.738,100.090)
N7: (99.471,127.885,100.114)
N9: (97.826,127.142,101.435)
O5': (99.965,126.550,105.353)
O3': (97.603,123.893,105.053)
Image (generated by PyMOL):