Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12083:12123
Extra
PDB:
ATOM 1 O3' A A2082 -24.845 -1.689 82.843 1.00 64.51 O
ATOM 2 P G A2083 -24.828 -0.484 81.795 1.00 56.69 P
ATOM 3 OP1 G A2083 -26.150 0.216 81.952 1.00 57.16 O
ATOM 4 OP2 G A2083 -24.453 -1.047 80.456 1.00 56.46 O
ATOM 5 O5' G A2083 -23.649 0.442 82.331 1.00 56.45 O
ATOM 6 C5' G A2083 -22.753 1.070 81.427 1.00 56.19 C
ATOM 7 C4' G A2083 -21.412 1.279 82.058 1.00 55.86 C
ATOM 8 O4' G A2083 -20.793 -0.008 82.344 1.00 55.59 O
ATOM 9 C3' G A2083 -20.398 2.001 81.207 1.00 55.59 C
ATOM 10 O3' G A2083 -20.564 3.405 81.227 1.00 55.78 O
ATOM 11 C2' G A2083 -19.083 1.538 81.800 1.00 55.22 C
ATOM 12 O2' G A2083 -18.829 2.234 82.999 1.00 55.30 O
ATOM 13 C1' G A2083 -19.404 0.076 82.145 1.00 55.20 C
ATOM 14 N9 G A2083 -19.026 -0.844 81.043 1.00 54.96 N
ATOM 15 C8 G A2083 -19.815 -1.625 80.251 1.00 55.08 C
ATOM 16 N7 G A2083 -19.162 -2.302 79.358 1.00 54.81 N
ATOM 17 C5 G A2083 -17.849 -1.954 79.560 1.00 54.49 C
ATOM 18 C6 G A2083 -16.651 -2.329 78.910 1.00 54.11 C
ATOM 19 O6 G A2083 -16.471 -3.106 77.979 1.00 53.98 O
ATOM 20 N1 G A2083 -15.545 -1.712 79.461 1.00 53.89 N
ATOM 21 C2 G A2083 -15.559 -0.840 80.497 1.00 54.01 C
ATOM 22 N2 G A2083 -14.417 -0.309 80.956 1.00 53.79 N
ATOM 23 N3 G A2083 -16.672 -0.499 81.064 1.00 54.36 N
ATOM 24 C4 G A2083 -17.764 -1.070 80.574 1.00 54.58 C
ATOM 25 P C A2084 -20.589 4.231 79.849 1.00 43.75 P
ATOM 26 OP1 C A2084 -20.851 5.637 80.190 1.00 44.00 O
ATOM 27 OP2 C A2084 -21.528 3.511 78.940 1.00 43.90 O
ATOM 28 O5' C A2084 -19.102 4.096 79.311 1.00 43.30 O
TER
ATOM 1 O3' G B2122 -8.268 -0.886 87.029 1.00 40.07 O
ATOM 2 P G B2123 -8.900 0.314 86.183 1.00 46.78 P
ATOM 3 OP1 G B2123 -8.222 0.293 84.851 1.00 46.50 O
ATOM 4 OP2 G B2123 -8.803 1.526 87.007 1.00 46.94 O
ATOM 5 O5' G B2123 -10.452 -0.108 86.054 1.00 47.08 O
ATOM 6 C5' G B2123 -10.928 -0.936 84.990 1.00 47.03 C
ATOM 7 C4' G B2123 -12.395 -0.679 84.676 1.00 47.37 C
ATOM 8 O4' G B2123 -13.245 -1.142 85.772 1.00 47.64 O
ATOM 9 C3' G B2123 -12.792 0.769 84.514 1.00 47.57 C
ATOM 10 O3' G B2123 -12.465 1.314 83.261 1.00 47.44 O
ATOM 11 C2' G B2123 -14.282 0.752 84.787 1.00 47.96 C
ATOM 12 O2' G B2123 -14.986 0.313 83.651 1.00 48.01 O
ATOM 13 C1' G B2123 -14.375 -0.294 85.901 1.00 47.99 C
ATOM 14 N9 G B2123 -14.320 0.376 87.221 1.00 48.16 N
ATOM 15 C8 G B2123 -13.170 0.571 87.956 1.00 47.97 C
ATOM 16 N7 G B2123 -13.364 1.248 89.052 1.00 48.19 N
ATOM 17 C5 G B2123 -14.706 1.581 89.016 1.00 48.55 C
ATOM 18 C6 G B2123 -15.435 2.352 89.962 1.00 48.91 C
ATOM 19 O6 G B2123 -14.961 2.877 91.015 1.00 48.97 O
ATOM 20 N1 G B2123 -16.791 2.467 89.592 1.00 49.23 N
ATOM 21 C2 G B2123 -17.333 1.914 88.452 1.00 49.19 C
ATOM 22 N2 G B2123 -18.626 2.162 88.281 1.00 49.54 N
ATOM 23 N3 G B2123 -16.667 1.198 87.563 1.00 48.86 N
ATOM 24 C4 G B2123 -15.342 1.065 87.901 1.00 48.54 C
ATOM 25 P A B2124 -12.195 2.889 83.166 1.00 46.51 P
ATOM 26 OP1 A B2124 -11.795 3.187 81.769 1.00 46.35 O
ATOM 27 OP2 A B2124 -11.283 3.224 84.280 1.00 46.42 O
ATOM 28 O5' A B2124 -13.621 3.519 83.457 1.00 46.95 O
TER
ATOM 2 P G A2083 -24.828 -0.484 81.795 1.00 56.69 P
ATOM 3 OP1 G A2083 -26.150 0.216 81.952 1.00 57.16 O
ATOM 4 OP2 G A2083 -24.453 -1.047 80.456 1.00 56.46 O
ATOM 5 O5' G A2083 -23.649 0.442 82.331 1.00 56.45 O
ATOM 6 C5' G A2083 -22.753 1.070 81.427 1.00 56.19 C
ATOM 7 C4' G A2083 -21.412 1.279 82.058 1.00 55.86 C
ATOM 8 O4' G A2083 -20.793 -0.008 82.344 1.00 55.59 O
ATOM 9 C3' G A2083 -20.398 2.001 81.207 1.00 55.59 C
ATOM 10 O3' G A2083 -20.564 3.405 81.227 1.00 55.78 O
ATOM 11 C2' G A2083 -19.083 1.538 81.800 1.00 55.22 C
ATOM 12 O2' G A2083 -18.829 2.234 82.999 1.00 55.30 O
ATOM 13 C1' G A2083 -19.404 0.076 82.145 1.00 55.20 C
ATOM 14 N9 G A2083 -19.026 -0.844 81.043 1.00 54.96 N
ATOM 15 C8 G A2083 -19.815 -1.625 80.251 1.00 55.08 C
ATOM 16 N7 G A2083 -19.162 -2.302 79.358 1.00 54.81 N
ATOM 17 C5 G A2083 -17.849 -1.954 79.560 1.00 54.49 C
ATOM 18 C6 G A2083 -16.651 -2.329 78.910 1.00 54.11 C
ATOM 19 O6 G A2083 -16.471 -3.106 77.979 1.00 53.98 O
ATOM 20 N1 G A2083 -15.545 -1.712 79.461 1.00 53.89 N
ATOM 21 C2 G A2083 -15.559 -0.840 80.497 1.00 54.01 C
ATOM 22 N2 G A2083 -14.417 -0.309 80.956 1.00 53.79 N
ATOM 23 N3 G A2083 -16.672 -0.499 81.064 1.00 54.36 N
ATOM 24 C4 G A2083 -17.764 -1.070 80.574 1.00 54.58 C
ATOM 25 P C A2084 -20.589 4.231 79.849 1.00 43.75 P
ATOM 26 OP1 C A2084 -20.851 5.637 80.190 1.00 44.00 O
ATOM 27 OP2 C A2084 -21.528 3.511 78.940 1.00 43.90 O
ATOM 28 O5' C A2084 -19.102 4.096 79.311 1.00 43.30 O
TER
ATOM 1 O3' G B2122 -8.268 -0.886 87.029 1.00 40.07 O
ATOM 2 P G B2123 -8.900 0.314 86.183 1.00 46.78 P
ATOM 3 OP1 G B2123 -8.222 0.293 84.851 1.00 46.50 O
ATOM 4 OP2 G B2123 -8.803 1.526 87.007 1.00 46.94 O
ATOM 5 O5' G B2123 -10.452 -0.108 86.054 1.00 47.08 O
ATOM 6 C5' G B2123 -10.928 -0.936 84.990 1.00 47.03 C
ATOM 7 C4' G B2123 -12.395 -0.679 84.676 1.00 47.37 C
ATOM 8 O4' G B2123 -13.245 -1.142 85.772 1.00 47.64 O
ATOM 9 C3' G B2123 -12.792 0.769 84.514 1.00 47.57 C
ATOM 10 O3' G B2123 -12.465 1.314 83.261 1.00 47.44 O
ATOM 11 C2' G B2123 -14.282 0.752 84.787 1.00 47.96 C
ATOM 12 O2' G B2123 -14.986 0.313 83.651 1.00 48.01 O
ATOM 13 C1' G B2123 -14.375 -0.294 85.901 1.00 47.99 C
ATOM 14 N9 G B2123 -14.320 0.376 87.221 1.00 48.16 N
ATOM 15 C8 G B2123 -13.170 0.571 87.956 1.00 47.97 C
ATOM 16 N7 G B2123 -13.364 1.248 89.052 1.00 48.19 N
ATOM 17 C5 G B2123 -14.706 1.581 89.016 1.00 48.55 C
ATOM 18 C6 G B2123 -15.435 2.352 89.962 1.00 48.91 C
ATOM 19 O6 G B2123 -14.961 2.877 91.015 1.00 48.97 O
ATOM 20 N1 G B2123 -16.791 2.467 89.592 1.00 49.23 N
ATOM 21 C2 G B2123 -17.333 1.914 88.452 1.00 49.19 C
ATOM 22 N2 G B2123 -18.626 2.162 88.281 1.00 49.54 N
ATOM 23 N3 G B2123 -16.667 1.198 87.563 1.00 48.86 N
ATOM 24 C4 G B2123 -15.342 1.065 87.901 1.00 48.54 C
ATOM 25 P A B2124 -12.195 2.889 83.166 1.00 46.51 P
ATOM 26 OP1 A B2124 -11.795 3.187 81.769 1.00 46.35 O
ATOM 27 OP2 A B2124 -11.283 3.224 84.280 1.00 46.42 O
ATOM 28 O5' A B2124 -13.621 3.519 83.457 1.00 46.95 O
TER
Atoms:
OP1: (-26.150,0.216,81.952)
OP2: (-24.453,-1.047,80.456)
C3': (-20.398,2.001,81.207)
C1': (-19.404,0.076,82.145)
C5': (-22.753,1.070,81.427)
O6: (-16.471,-3.106,77.979)
O4': (-20.793,-0.008,82.344)
C8: (-19.815,-1.625,80.251)
C2: (-15.559,-0.840,80.497)
C6: (-16.651,-2.329,78.910)
C5: (-17.849,-1.954,79.560)
C4: (-17.764,-1.070,80.574)
P: (-24.828,-0.484,81.795)
C4': (-21.412,1.279,82.058)
C2': (-19.083,1.538,81.800)
O2': (-18.829,2.234,82.999)
N1: (-15.545,-1.712,79.461)
N2: (-14.417,-0.309,80.956)
N3: (-16.672,-0.499,81.064)
N7: (-19.162,-2.302,79.358)
N9: (-19.026,-0.844,81.043)
O5': (-23.649,0.442,82.331)
O3': (-20.564,3.405,81.227)
OP2: (-24.453,-1.047,80.456)
C3': (-20.398,2.001,81.207)
C1': (-19.404,0.076,82.145)
C5': (-22.753,1.070,81.427)
O6: (-16.471,-3.106,77.979)
O4': (-20.793,-0.008,82.344)
C8: (-19.815,-1.625,80.251)
C2: (-15.559,-0.840,80.497)
C6: (-16.651,-2.329,78.910)
C5: (-17.849,-1.954,79.560)
C4: (-17.764,-1.070,80.574)
P: (-24.828,-0.484,81.795)
C4': (-21.412,1.279,82.058)
C2': (-19.083,1.538,81.800)
O2': (-18.829,2.234,82.999)
N1: (-15.545,-1.712,79.461)
N2: (-14.417,-0.309,80.956)
N3: (-16.672,-0.499,81.064)
N7: (-19.162,-2.302,79.358)
N9: (-19.026,-0.844,81.043)
O5': (-23.649,0.442,82.331)
O3': (-20.564,3.405,81.227)
OP1: (-8.222,0.293,84.851)
OP2: (-8.803,1.526,87.007)
C3': (-12.792,0.769,84.514)
C1': (-14.375,-0.294,85.901)
C5': (-10.928,-0.936,84.990)
O6: (-14.961,2.877,91.015)
O4': (-13.245,-1.142,85.772)
C8: (-13.170,0.571,87.956)
C2: (-17.333,1.914,88.452)
C6: (-15.435,2.352,89.962)
C5: (-14.706,1.581,89.016)
C4: (-15.342,1.065,87.901)
P: (-8.900,0.314,86.183)
C4': (-12.395,-0.679,84.676)
C2': (-14.282,0.752,84.787)
O2': (-14.986,0.313,83.651)
N1: (-16.791,2.467,89.592)
N2: (-18.626,2.162,88.281)
N3: (-16.667,1.198,87.563)
N7: (-13.364,1.248,89.052)
N9: (-14.320,0.376,87.221)
O5': (-10.452,-0.108,86.054)
O3': (-12.465,1.314,83.261)
OP2: (-8.803,1.526,87.007)
C3': (-12.792,0.769,84.514)
C1': (-14.375,-0.294,85.901)
C5': (-10.928,-0.936,84.990)
O6: (-14.961,2.877,91.015)
O4': (-13.245,-1.142,85.772)
C8: (-13.170,0.571,87.956)
C2: (-17.333,1.914,88.452)
C6: (-15.435,2.352,89.962)
C5: (-14.706,1.581,89.016)
C4: (-15.342,1.065,87.901)
P: (-8.900,0.314,86.183)
C4': (-12.395,-0.679,84.676)
C2': (-14.282,0.752,84.787)
O2': (-14.986,0.313,83.651)
N1: (-16.791,2.467,89.592)
N2: (-18.626,2.162,88.281)
N3: (-16.667,1.198,87.563)
N7: (-13.364,1.248,89.052)
N9: (-14.320,0.376,87.221)
O5': (-10.452,-0.108,86.054)
O3': (-12.465,1.314,83.261)
Image (generated by PyMOL):