Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G16:G28
Extra
PDB:
ATOM 1 O3' A A 15 -13.184 -42.748 0.668 1.00 17.71 O
ATOM 2 P A A 16 -12.640 -42.533 -0.814 1.00 21.20 P
ATOM 3 OP1 A A 16 -13.042 -43.723 -1.609 1.00 23.86 O
ATOM 4 OP2 A A 16 -11.211 -42.147 -0.735 1.00 22.02 O
ATOM 5 O5' A A 16 -13.449 -41.269 -1.326 1.00 20.37 O
ATOM 6 C5' A A 16 -14.862 -41.254 -1.286 1.00 22.53 C
ATOM 7 C4' A A 16 -15.346 -39.864 -1.544 1.00 23.18 C
ATOM 8 O4' A A 16 -14.849 -39.024 -0.479 1.00 23.97 O
ATOM 9 C3' A A 16 -14.788 -39.225 -2.805 1.00 23.27 C
ATOM 10 O3' A A 16 -15.521 -39.550 -3.963 1.00 22.47 O
ATOM 11 C2' A A 16 -14.888 -37.747 -2.493 1.00 24.57 C
ATOM 12 O2' A A 16 -16.208 -37.283 -2.675 1.00 25.37 O
ATOM 13 C1' A A 16 -14.525 -37.744 -1.007 1.00 25.43 C
ATOM 14 N9 A A 16 -13.108 -37.480 -0.764 1.00 25.32 N
ATOM 15 C8 A A 16 -12.146 -38.291 -0.210 1.00 25.21 C
ATOM 16 N7 A A 16 -10.974 -37.716 -0.103 1.00 22.48 N
ATOM 17 C5 A A 16 -11.177 -36.445 -0.629 1.00 22.04 C
ATOM 18 C6 A A 16 -10.328 -35.339 -0.801 1.00 19.76 C
ATOM 19 N6 A A 16 -9.049 -35.314 -0.437 1.00 22.93 N
ATOM 20 N1 A A 16 -10.845 -34.238 -1.368 1.00 18.71 N
ATOM 21 C2 A A 16 -12.127 -34.249 -1.735 1.00 22.16 C
ATOM 22 N3 A A 16 -13.025 -35.216 -1.625 1.00 23.78 N
ATOM 23 C4 A A 16 -12.480 -36.297 -1.053 1.00 23.52 C
ATOM 24 P C A 17 -14.735 -39.744 -5.341 1.00 27.33 P
ATOM 25 OP1 C A 17 -15.679 -40.180 -6.404 1.00 27.33 O
ATOM 26 OP2 C A 17 -13.558 -40.595 -5.000 1.00 30.54 O
ATOM 27 O5' C A 17 -14.183 -38.295 -5.707 1.00 20.92 O
TER
ATOM 1 O3' G B 27 -0.463 -30.040 -4.061 1.00 15.05 O
ATOM 2 P C B 28 -0.516 -29.488 -2.550 1.00 18.91 P
ATOM 3 OP1 C B 28 -0.327 -28.021 -2.653 1.00 15.79 O
ATOM 4 OP2 C B 28 0.406 -30.295 -1.696 1.00 13.95 O
ATOM 5 O5' C B 28 -2.022 -29.769 -2.122 1.00 15.46 O
ATOM 6 C5' C B 28 -3.071 -29.065 -2.766 1.00 17.09 C
ATOM 7 C4' C B 28 -4.416 -29.506 -2.248 1.00 17.90 C
ATOM 8 O4' C B 28 -4.714 -30.852 -2.684 1.00 17.93 O
ATOM 9 C3' C B 28 -4.584 -29.568 -0.739 1.00 18.54 C
ATOM 10 O3' C B 28 -4.827 -28.279 -0.192 1.00 18.69 O
ATOM 11 C2' C B 28 -5.817 -30.445 -0.607 1.00 19.47 C
ATOM 12 O2' C B 28 -6.996 -29.708 -0.850 1.00 22.68 O
ATOM 13 C1' C B 28 -5.602 -31.446 -1.753 1.00 19.00 C
ATOM 14 N1 C B 28 -5.009 -32.694 -1.272 1.00 19.07 N
ATOM 15 C2 C B 28 -5.859 -33.717 -0.880 1.00 19.08 C
ATOM 16 O2 C B 28 -7.079 -33.566 -1.037 1.00 21.04 O
ATOM 17 N3 C B 28 -5.336 -34.845 -0.350 1.00 19.34 N
ATOM 18 C4 C B 28 -4.013 -34.972 -0.234 1.00 19.64 C
ATOM 19 N4 C B 28 -3.537 -36.088 0.320 1.00 21.79 N
ATOM 20 C5 C B 28 -3.120 -33.958 -0.673 1.00 19.04 C
ATOM 21 C6 C B 28 -3.656 -32.844 -1.181 1.00 19.00 C
ATOM 22 P G B 29 -4.442 -27.969 1.341 1.00 23.20 P
ATOM 23 OP1 G B 29 -5.510 -28.480 2.251 1.00 19.85 O
ATOM 24 OP2 G B 29 -4.067 -26.535 1.387 1.00 21.96 O
ATOM 25 O5' G B 29 -3.130 -28.834 1.602 1.00 20.70 O
TER
ATOM 2 P A A 16 -12.640 -42.533 -0.814 1.00 21.20 P
ATOM 3 OP1 A A 16 -13.042 -43.723 -1.609 1.00 23.86 O
ATOM 4 OP2 A A 16 -11.211 -42.147 -0.735 1.00 22.02 O
ATOM 5 O5' A A 16 -13.449 -41.269 -1.326 1.00 20.37 O
ATOM 6 C5' A A 16 -14.862 -41.254 -1.286 1.00 22.53 C
ATOM 7 C4' A A 16 -15.346 -39.864 -1.544 1.00 23.18 C
ATOM 8 O4' A A 16 -14.849 -39.024 -0.479 1.00 23.97 O
ATOM 9 C3' A A 16 -14.788 -39.225 -2.805 1.00 23.27 C
ATOM 10 O3' A A 16 -15.521 -39.550 -3.963 1.00 22.47 O
ATOM 11 C2' A A 16 -14.888 -37.747 -2.493 1.00 24.57 C
ATOM 12 O2' A A 16 -16.208 -37.283 -2.675 1.00 25.37 O
ATOM 13 C1' A A 16 -14.525 -37.744 -1.007 1.00 25.43 C
ATOM 14 N9 A A 16 -13.108 -37.480 -0.764 1.00 25.32 N
ATOM 15 C8 A A 16 -12.146 -38.291 -0.210 1.00 25.21 C
ATOM 16 N7 A A 16 -10.974 -37.716 -0.103 1.00 22.48 N
ATOM 17 C5 A A 16 -11.177 -36.445 -0.629 1.00 22.04 C
ATOM 18 C6 A A 16 -10.328 -35.339 -0.801 1.00 19.76 C
ATOM 19 N6 A A 16 -9.049 -35.314 -0.437 1.00 22.93 N
ATOM 20 N1 A A 16 -10.845 -34.238 -1.368 1.00 18.71 N
ATOM 21 C2 A A 16 -12.127 -34.249 -1.735 1.00 22.16 C
ATOM 22 N3 A A 16 -13.025 -35.216 -1.625 1.00 23.78 N
ATOM 23 C4 A A 16 -12.480 -36.297 -1.053 1.00 23.52 C
ATOM 24 P C A 17 -14.735 -39.744 -5.341 1.00 27.33 P
ATOM 25 OP1 C A 17 -15.679 -40.180 -6.404 1.00 27.33 O
ATOM 26 OP2 C A 17 -13.558 -40.595 -5.000 1.00 30.54 O
ATOM 27 O5' C A 17 -14.183 -38.295 -5.707 1.00 20.92 O
TER
ATOM 1 O3' G B 27 -0.463 -30.040 -4.061 1.00 15.05 O
ATOM 2 P C B 28 -0.516 -29.488 -2.550 1.00 18.91 P
ATOM 3 OP1 C B 28 -0.327 -28.021 -2.653 1.00 15.79 O
ATOM 4 OP2 C B 28 0.406 -30.295 -1.696 1.00 13.95 O
ATOM 5 O5' C B 28 -2.022 -29.769 -2.122 1.00 15.46 O
ATOM 6 C5' C B 28 -3.071 -29.065 -2.766 1.00 17.09 C
ATOM 7 C4' C B 28 -4.416 -29.506 -2.248 1.00 17.90 C
ATOM 8 O4' C B 28 -4.714 -30.852 -2.684 1.00 17.93 O
ATOM 9 C3' C B 28 -4.584 -29.568 -0.739 1.00 18.54 C
ATOM 10 O3' C B 28 -4.827 -28.279 -0.192 1.00 18.69 O
ATOM 11 C2' C B 28 -5.817 -30.445 -0.607 1.00 19.47 C
ATOM 12 O2' C B 28 -6.996 -29.708 -0.850 1.00 22.68 O
ATOM 13 C1' C B 28 -5.602 -31.446 -1.753 1.00 19.00 C
ATOM 14 N1 C B 28 -5.009 -32.694 -1.272 1.00 19.07 N
ATOM 15 C2 C B 28 -5.859 -33.717 -0.880 1.00 19.08 C
ATOM 16 O2 C B 28 -7.079 -33.566 -1.037 1.00 21.04 O
ATOM 17 N3 C B 28 -5.336 -34.845 -0.350 1.00 19.34 N
ATOM 18 C4 C B 28 -4.013 -34.972 -0.234 1.00 19.64 C
ATOM 19 N4 C B 28 -3.537 -36.088 0.320 1.00 21.79 N
ATOM 20 C5 C B 28 -3.120 -33.958 -0.673 1.00 19.04 C
ATOM 21 C6 C B 28 -3.656 -32.844 -1.181 1.00 19.00 C
ATOM 22 P G B 29 -4.442 -27.969 1.341 1.00 23.20 P
ATOM 23 OP1 G B 29 -5.510 -28.480 2.251 1.00 19.85 O
ATOM 24 OP2 G B 29 -4.067 -26.535 1.387 1.00 21.96 O
ATOM 25 O5' G B 29 -3.130 -28.834 1.602 1.00 20.70 O
TER
Atoms:
OP1: (-13.042,-43.723,-1.609)
OP2: (-11.211,-42.147,-0.735)
C3': (-14.788,-39.225,-2.805)
C1': (-14.525,-37.744,-1.007)
C5': (-14.862,-41.254,-1.286)
O4': (-14.849,-39.024,-0.479)
C8: (-12.146,-38.291,-0.210)
O2': (-16.208,-37.283,-2.675)
C6: (-10.328,-35.339,-0.801)
C5: (-11.177,-36.445,-0.629)
C4: (-12.480,-36.297,-1.053)
P: (-12.640,-42.533,-0.814)
C4': (-15.346,-39.864,-1.544)
C2': (-14.888,-37.747,-2.493)
C2: (-12.127,-34.249,-1.735)
N1: (-10.845,-34.238,-1.368)
N3: (-13.025,-35.216,-1.625)
N6: (-9.049,-35.314,-0.437)
N7: (-10.974,-37.716,-0.103)
N9: (-13.108,-37.480,-0.764)
O5': (-13.449,-41.269,-1.326)
O3': (-15.521,-39.550,-3.963)
OP2: (-11.211,-42.147,-0.735)
C3': (-14.788,-39.225,-2.805)
C1': (-14.525,-37.744,-1.007)
C5': (-14.862,-41.254,-1.286)
O4': (-14.849,-39.024,-0.479)
C8: (-12.146,-38.291,-0.210)
O2': (-16.208,-37.283,-2.675)
C6: (-10.328,-35.339,-0.801)
C5: (-11.177,-36.445,-0.629)
C4: (-12.480,-36.297,-1.053)
P: (-12.640,-42.533,-0.814)
C4': (-15.346,-39.864,-1.544)
C2': (-14.888,-37.747,-2.493)
C2: (-12.127,-34.249,-1.735)
N1: (-10.845,-34.238,-1.368)
N3: (-13.025,-35.216,-1.625)
N6: (-9.049,-35.314,-0.437)
N7: (-10.974,-37.716,-0.103)
N9: (-13.108,-37.480,-0.764)
O5': (-13.449,-41.269,-1.326)
O3': (-15.521,-39.550,-3.963)
C2: (-5.859,-33.717,-0.880)
OP1: (-0.327,-28.021,-2.653)
OP2: (0.406,-30.295,-1.696)
C4: (-4.013,-34.972,-0.234)
O5': (-2.022,-29.769,-2.122)
C3': (-4.584,-29.568,-0.739)
C1': (-5.602,-31.446,-1.753)
O4': (-4.714,-30.852,-2.684)
C5': (-3.071,-29.065,-2.766)
P: (-0.516,-29.488,-2.550)
O2: (-7.079,-33.566,-1.037)
C4': (-4.416,-29.506,-2.248)
C2': (-5.817,-30.445,-0.607)
O2': (-6.996,-29.708,-0.850)
N1: (-5.009,-32.694,-1.272)
N3: (-5.336,-34.845,-0.350)
N4: (-3.537,-36.088,0.320)
C6: (-3.656,-32.844,-1.181)
C5: (-3.120,-33.958,-0.673)
O3': (-4.827,-28.279,-0.192)
OP1: (-0.327,-28.021,-2.653)
OP2: (0.406,-30.295,-1.696)
C4: (-4.013,-34.972,-0.234)
O5': (-2.022,-29.769,-2.122)
C3': (-4.584,-29.568,-0.739)
C1': (-5.602,-31.446,-1.753)
O4': (-4.714,-30.852,-2.684)
C5': (-3.071,-29.065,-2.766)
P: (-0.516,-29.488,-2.550)
O2: (-7.079,-33.566,-1.037)
C4': (-4.416,-29.506,-2.248)
C2': (-5.817,-30.445,-0.607)
O2': (-6.996,-29.708,-0.850)
N1: (-5.009,-32.694,-1.272)
N3: (-5.336,-34.845,-0.350)
N4: (-3.537,-36.088,0.320)
C6: (-3.656,-32.844,-1.181)
C5: (-3.120,-33.958,-0.673)
O3': (-4.827,-28.279,-0.192)
Image (generated by PyMOL):