Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:B22:A5
Extra
PDB:
ATOM 1 O3' G A 21 19.306 0.435 21.871 1.00 60.32 O
ATOM 2 P A A 22 18.681 -0.098 23.249 1.00 57.57 P
ATOM 3 OP1 A A 22 18.863 1.004 24.227 1.00 59.74 O
ATOM 4 OP2 A A 22 19.200 -1.453 23.573 1.00 56.43 O
ATOM 5 O5' A A 22 17.124 -0.239 22.926 1.00 57.83 O
ATOM 6 C5' A A 22 16.403 0.823 22.301 1.00 53.87 C
ATOM 7 C4' A A 22 15.040 0.344 21.848 1.00 51.64 C
ATOM 8 O4' A A 22 15.163 -0.370 20.585 1.00 55.25 O
ATOM 9 C3' A A 22 14.303 -0.617 22.776 1.00 50.38 C
ATOM 10 O3' A A 22 13.506 0.113 23.697 1.00 54.46 O
ATOM 11 C2' A A 22 13.401 -1.355 21.800 1.00 48.81 C
ATOM 12 O2' A A 22 12.292 -0.558 21.448 1.00 40.83 O
ATOM 13 C1' A A 22 14.337 -1.527 20.600 1.00 50.01 C
ATOM 14 N9 A A 22 15.194 -2.718 20.684 1.00 46.19 N
ATOM 15 C8 A A 22 16.497 -2.789 21.126 1.00 52.80 C
ATOM 16 N7 A A 22 16.993 -4.003 21.119 1.00 49.36 N
ATOM 17 C5 A A 22 15.956 -4.784 20.635 1.00 51.74 C
ATOM 18 C6 A A 22 15.850 -6.166 20.394 1.00 54.50 C
ATOM 19 N6 A A 22 16.843 -7.032 20.634 1.00 57.21 N
ATOM 20 N1 A A 22 14.675 -6.635 19.897 1.00 47.04 N
ATOM 21 C2 A A 22 13.686 -5.759 19.672 1.00 49.82 C
ATOM 22 N3 A A 22 13.665 -4.436 19.867 1.00 42.28 N
ATOM 23 C4 A A 22 14.844 -4.006 20.353 1.00 46.92 C
ATOM 24 P C A 23 13.324 -0.423 25.200 1.00 55.84 P
ATOM 25 OP1 C A 23 12.679 0.703 25.918 1.00 52.94 O
ATOM 26 OP2 C A 23 14.576 -1.005 25.734 1.00 57.77 O
ATOM 27 O5' C A 23 12.292 -1.632 25.061 1.00 54.78 O
TER
ATOM 1 O3' A B 4 9.703 -15.164 16.478 1.00 43.29 O
ATOM 2 P C B 5 10.092 -14.475 15.088 1.00 50.52 P
ATOM 3 OP1 C B 5 9.314 -15.180 14.053 1.00 51.29 O
ATOM 4 OP2 C B 5 11.565 -14.372 14.947 1.00 50.98 O
ATOM 5 O5' C B 5 9.519 -12.993 15.233 1.00 50.95 O
ATOM 6 C5' C B 5 8.117 -12.773 15.343 1.00 51.43 C
ATOM 7 C4' C B 5 7.839 -11.378 15.832 1.00 50.61 C
ATOM 8 O4' C B 5 8.414 -11.196 17.154 1.00 47.66 O
ATOM 9 C3' C B 5 8.427 -10.234 15.025 1.00 48.78 C
ATOM 10 O3' C B 5 7.651 -9.940 13.868 1.00 45.94 O
ATOM 11 C2' C B 5 8.368 -9.108 16.042 1.00 51.14 C
ATOM 12 O2' C B 5 7.059 -8.607 16.239 1.00 49.44 O
ATOM 13 C1' C B 5 8.808 -9.843 17.308 1.00 48.47 C
ATOM 14 N1 C B 5 10.262 -9.787 17.555 1.00 50.39 N
ATOM 15 C2 C B 5 10.777 -8.685 18.246 1.00 48.77 C
ATOM 16 O2 C B 5 10.003 -7.771 18.594 1.00 54.60 O
ATOM 17 N3 C B 5 12.095 -8.636 18.516 1.00 42.38 N
ATOM 18 C4 C B 5 12.899 -9.624 18.125 1.00 35.89 C
ATOM 19 N4 C B 5 14.191 -9.529 18.443 1.00 43.04 N
ATOM 20 C5 C B 5 12.412 -10.747 17.400 1.00 39.65 C
ATOM 21 C6 C B 5 11.099 -10.788 17.136 1.00 44.83 C
ATOM 22 P C B 6 8.379 -9.420 12.535 1.00 54.50 P
ATOM 23 OP1 C B 6 7.379 -9.382 11.439 1.00 46.51 O
ATOM 24 OP2 C B 6 9.646 -10.164 12.338 1.00 49.03 O
ATOM 25 O5' C B 6 8.770 -7.919 12.878 1.00 45.75 O
TER
ATOM 2 P A A 22 18.681 -0.098 23.249 1.00 57.57 P
ATOM 3 OP1 A A 22 18.863 1.004 24.227 1.00 59.74 O
ATOM 4 OP2 A A 22 19.200 -1.453 23.573 1.00 56.43 O
ATOM 5 O5' A A 22 17.124 -0.239 22.926 1.00 57.83 O
ATOM 6 C5' A A 22 16.403 0.823 22.301 1.00 53.87 C
ATOM 7 C4' A A 22 15.040 0.344 21.848 1.00 51.64 C
ATOM 8 O4' A A 22 15.163 -0.370 20.585 1.00 55.25 O
ATOM 9 C3' A A 22 14.303 -0.617 22.776 1.00 50.38 C
ATOM 10 O3' A A 22 13.506 0.113 23.697 1.00 54.46 O
ATOM 11 C2' A A 22 13.401 -1.355 21.800 1.00 48.81 C
ATOM 12 O2' A A 22 12.292 -0.558 21.448 1.00 40.83 O
ATOM 13 C1' A A 22 14.337 -1.527 20.600 1.00 50.01 C
ATOM 14 N9 A A 22 15.194 -2.718 20.684 1.00 46.19 N
ATOM 15 C8 A A 22 16.497 -2.789 21.126 1.00 52.80 C
ATOM 16 N7 A A 22 16.993 -4.003 21.119 1.00 49.36 N
ATOM 17 C5 A A 22 15.956 -4.784 20.635 1.00 51.74 C
ATOM 18 C6 A A 22 15.850 -6.166 20.394 1.00 54.50 C
ATOM 19 N6 A A 22 16.843 -7.032 20.634 1.00 57.21 N
ATOM 20 N1 A A 22 14.675 -6.635 19.897 1.00 47.04 N
ATOM 21 C2 A A 22 13.686 -5.759 19.672 1.00 49.82 C
ATOM 22 N3 A A 22 13.665 -4.436 19.867 1.00 42.28 N
ATOM 23 C4 A A 22 14.844 -4.006 20.353 1.00 46.92 C
ATOM 24 P C A 23 13.324 -0.423 25.200 1.00 55.84 P
ATOM 25 OP1 C A 23 12.679 0.703 25.918 1.00 52.94 O
ATOM 26 OP2 C A 23 14.576 -1.005 25.734 1.00 57.77 O
ATOM 27 O5' C A 23 12.292 -1.632 25.061 1.00 54.78 O
TER
ATOM 1 O3' A B 4 9.703 -15.164 16.478 1.00 43.29 O
ATOM 2 P C B 5 10.092 -14.475 15.088 1.00 50.52 P
ATOM 3 OP1 C B 5 9.314 -15.180 14.053 1.00 51.29 O
ATOM 4 OP2 C B 5 11.565 -14.372 14.947 1.00 50.98 O
ATOM 5 O5' C B 5 9.519 -12.993 15.233 1.00 50.95 O
ATOM 6 C5' C B 5 8.117 -12.773 15.343 1.00 51.43 C
ATOM 7 C4' C B 5 7.839 -11.378 15.832 1.00 50.61 C
ATOM 8 O4' C B 5 8.414 -11.196 17.154 1.00 47.66 O
ATOM 9 C3' C B 5 8.427 -10.234 15.025 1.00 48.78 C
ATOM 10 O3' C B 5 7.651 -9.940 13.868 1.00 45.94 O
ATOM 11 C2' C B 5 8.368 -9.108 16.042 1.00 51.14 C
ATOM 12 O2' C B 5 7.059 -8.607 16.239 1.00 49.44 O
ATOM 13 C1' C B 5 8.808 -9.843 17.308 1.00 48.47 C
ATOM 14 N1 C B 5 10.262 -9.787 17.555 1.00 50.39 N
ATOM 15 C2 C B 5 10.777 -8.685 18.246 1.00 48.77 C
ATOM 16 O2 C B 5 10.003 -7.771 18.594 1.00 54.60 O
ATOM 17 N3 C B 5 12.095 -8.636 18.516 1.00 42.38 N
ATOM 18 C4 C B 5 12.899 -9.624 18.125 1.00 35.89 C
ATOM 19 N4 C B 5 14.191 -9.529 18.443 1.00 43.04 N
ATOM 20 C5 C B 5 12.412 -10.747 17.400 1.00 39.65 C
ATOM 21 C6 C B 5 11.099 -10.788 17.136 1.00 44.83 C
ATOM 22 P C B 6 8.379 -9.420 12.535 1.00 54.50 P
ATOM 23 OP1 C B 6 7.379 -9.382 11.439 1.00 46.51 O
ATOM 24 OP2 C B 6 9.646 -10.164 12.338 1.00 49.03 O
ATOM 25 O5' C B 6 8.770 -7.919 12.878 1.00 45.75 O
TER
Atoms:
OP1: (18.863,1.004,24.227)
OP2: (19.200,-1.453,23.573)
C3': (14.303,-0.617,22.776)
C1': (14.337,-1.527,20.600)
C5': (16.403,0.823,22.301)
O4': (15.163,-0.370,20.585)
C8: (16.497,-2.789,21.126)
O2': (12.292,-0.558,21.448)
C6: (15.850,-6.166,20.394)
C5: (15.956,-4.784,20.635)
C4: (14.844,-4.006,20.353)
P: (18.681,-0.098,23.249)
C4': (15.040,0.344,21.848)
C2': (13.401,-1.355,21.800)
C2: (13.686,-5.759,19.672)
N1: (14.675,-6.635,19.897)
N3: (13.665,-4.436,19.867)
N6: (16.843,-7.032,20.634)
N7: (16.993,-4.003,21.119)
N9: (15.194,-2.718,20.684)
O5': (17.124,-0.239,22.926)
O3': (13.506,0.113,23.697)
OP2: (19.200,-1.453,23.573)
C3': (14.303,-0.617,22.776)
C1': (14.337,-1.527,20.600)
C5': (16.403,0.823,22.301)
O4': (15.163,-0.370,20.585)
C8: (16.497,-2.789,21.126)
O2': (12.292,-0.558,21.448)
C6: (15.850,-6.166,20.394)
C5: (15.956,-4.784,20.635)
C4: (14.844,-4.006,20.353)
P: (18.681,-0.098,23.249)
C4': (15.040,0.344,21.848)
C2': (13.401,-1.355,21.800)
C2: (13.686,-5.759,19.672)
N1: (14.675,-6.635,19.897)
N3: (13.665,-4.436,19.867)
N6: (16.843,-7.032,20.634)
N7: (16.993,-4.003,21.119)
N9: (15.194,-2.718,20.684)
O5': (17.124,-0.239,22.926)
O3': (13.506,0.113,23.697)
C2: (10.777,-8.685,18.246)
OP1: (9.314,-15.180,14.053)
OP2: (11.565,-14.372,14.947)
C4: (12.899,-9.624,18.125)
O5': (9.519,-12.993,15.233)
C3': (8.427,-10.234,15.025)
C1': (8.808,-9.843,17.308)
O4': (8.414,-11.196,17.154)
C5': (8.117,-12.773,15.343)
P: (10.092,-14.475,15.088)
O2: (10.003,-7.771,18.594)
C4': (7.839,-11.378,15.832)
C2': (8.368,-9.108,16.042)
O2': (7.059,-8.607,16.239)
N1: (10.262,-9.787,17.555)
N3: (12.095,-8.636,18.516)
N4: (14.191,-9.529,18.443)
C6: (11.099,-10.788,17.136)
C5: (12.412,-10.747,17.400)
O3': (7.651,-9.940,13.868)
OP1: (9.314,-15.180,14.053)
OP2: (11.565,-14.372,14.947)
C4: (12.899,-9.624,18.125)
O5': (9.519,-12.993,15.233)
C3': (8.427,-10.234,15.025)
C1': (8.808,-9.843,17.308)
O4': (8.414,-11.196,17.154)
C5': (8.117,-12.773,15.343)
P: (10.092,-14.475,15.088)
O2: (10.003,-7.771,18.594)
C4': (7.839,-11.378,15.832)
C2': (8.368,-9.108,16.042)
O2': (7.059,-8.607,16.239)
N1: (10.262,-9.787,17.555)
N3: (12.095,-8.636,18.516)
N4: (14.191,-9.529,18.443)
C6: (11.099,-10.788,17.136)
C5: (12.412,-10.747,17.400)
O3': (7.651,-9.940,13.868)
Image (generated by PyMOL):