Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E16:E28
Extra
PDB:
ATOM 1 O3' A A 15 -19.566 -14.919 9.321 1.00 17.48 O
ATOM 2 P A A 16 -21.114 -14.985 9.782 1.00 19.29 P
ATOM 3 OP1 A A 16 -21.872 -13.826 9.234 1.00 17.09 O
ATOM 4 OP2 A A 16 -21.104 -15.227 11.250 1.00 16.55 O
ATOM 5 O5' A A 16 -21.677 -16.304 9.080 1.00 20.13 O
ATOM 6 C5' A A 16 -21.823 -16.401 7.658 1.00 18.50 C
ATOM 7 C4' A A 16 -22.406 -17.748 7.291 1.00 17.41 C
ATOM 8 O4' A A 16 -21.522 -18.797 7.758 1.00 18.78 O
ATOM 9 C3' A A 16 -23.731 -18.061 7.961 1.00 16.40 C
ATOM 10 O3' A A 16 -24.807 -17.514 7.250 1.00 14.32 O
ATOM 11 C2' A A 16 -23.759 -19.578 7.971 1.00 17.20 C
ATOM 12 O2' A A 16 -24.135 -20.128 6.727 1.00 18.26 O
ATOM 13 C1' A A 16 -22.291 -19.892 8.245 1.00 18.06 C
ATOM 14 N9 A A 16 -22.003 -20.046 9.668 1.00 18.30 N
ATOM 15 C8 A A 16 -21.354 -19.148 10.478 1.00 20.34 C
ATOM 16 N7 A A 16 -21.222 -19.554 11.716 1.00 22.35 N
ATOM 17 C5 A A 16 -21.833 -20.801 11.726 1.00 19.44 C
ATOM 18 C6 A A 16 -22.029 -21.751 12.746 1.00 18.54 C
ATOM 19 N6 A A 16 -21.651 -21.567 14.013 1.00 17.30 N
ATOM 20 N1 A A 16 -22.644 -22.905 12.418 1.00 16.51 N
ATOM 21 C2 A A 16 -23.055 -23.067 11.159 1.00 17.41 C
ATOM 22 N3 A A 16 -22.948 -22.241 10.116 1.00 16.31 N
ATOM 23 C4 A A 16 -22.316 -21.116 10.470 1.00 17.70 C
ATOM 24 P C A 17 -26.130 -17.147 8.044 1.00 14.74 P
ATOM 25 OP1 C A 17 -27.190 -16.686 7.102 1.00 14.08 O
ATOM 26 OP2 C A 17 -25.687 -16.257 9.148 1.00 12.44 O
ATOM 27 O5' C A 17 -26.552 -18.539 8.691 1.00 14.70 O
TER
ATOM 1 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 2 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 3 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 4 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 5 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
ATOM 6 C5' C B 28 -24.562 -27.665 20.034 1.00 12.68 C
ATOM 7 C4' C B 28 -24.039 -27.324 18.654 1.00 14.86 C
ATOM 8 O4' C B 28 -24.236 -25.917 18.369 1.00 16.43 O
ATOM 9 C3' C B 28 -22.548 -27.516 18.441 1.00 16.54 C
ATOM 10 O3' C B 28 -22.228 -28.882 18.250 1.00 19.85 O
ATOM 11 C2' C B 28 -22.274 -26.643 17.216 1.00 16.00 C
ATOM 12 O2' C B 28 -22.576 -27.222 15.962 1.00 16.21 O
ATOM 13 C1' C B 28 -23.243 -25.484 17.452 1.00 15.64 C
ATOM 14 N1 C B 28 -22.579 -24.298 17.990 1.00 15.67 N
ATOM 15 C2 C B 28 -22.074 -23.367 17.093 1.00 17.15 C
ATOM 16 O2 C B 28 -22.173 -23.600 15.879 1.00 21.03 O
ATOM 17 N3 C B 28 -21.485 -22.245 17.558 1.00 16.75 N
ATOM 18 C4 C B 28 -21.377 -22.052 18.869 1.00 16.75 C
ATOM 19 N4 C B 28 -20.797 -20.926 19.289 1.00 16.65 N
ATOM 20 C5 C B 28 -21.861 -23.005 19.811 1.00 16.89 C
ATOM 21 C6 C B 28 -22.456 -24.102 19.332 1.00 14.46 C
ATOM 22 P G B 29 -20.707 -29.369 18.407 1.00 21.45 P
ATOM 23 OP1 G B 29 -20.016 -28.990 17.139 1.00 23.89 O
ATOM 24 OP2 G B 29 -20.715 -30.784 18.852 1.00 24.76 O
ATOM 25 O5' G B 29 -20.113 -28.501 19.603 1.00 17.74 O
TER
ATOM 2 P A A 16 -21.114 -14.985 9.782 1.00 19.29 P
ATOM 3 OP1 A A 16 -21.872 -13.826 9.234 1.00 17.09 O
ATOM 4 OP2 A A 16 -21.104 -15.227 11.250 1.00 16.55 O
ATOM 5 O5' A A 16 -21.677 -16.304 9.080 1.00 20.13 O
ATOM 6 C5' A A 16 -21.823 -16.401 7.658 1.00 18.50 C
ATOM 7 C4' A A 16 -22.406 -17.748 7.291 1.00 17.41 C
ATOM 8 O4' A A 16 -21.522 -18.797 7.758 1.00 18.78 O
ATOM 9 C3' A A 16 -23.731 -18.061 7.961 1.00 16.40 C
ATOM 10 O3' A A 16 -24.807 -17.514 7.250 1.00 14.32 O
ATOM 11 C2' A A 16 -23.759 -19.578 7.971 1.00 17.20 C
ATOM 12 O2' A A 16 -24.135 -20.128 6.727 1.00 18.26 O
ATOM 13 C1' A A 16 -22.291 -19.892 8.245 1.00 18.06 C
ATOM 14 N9 A A 16 -22.003 -20.046 9.668 1.00 18.30 N
ATOM 15 C8 A A 16 -21.354 -19.148 10.478 1.00 20.34 C
ATOM 16 N7 A A 16 -21.222 -19.554 11.716 1.00 22.35 N
ATOM 17 C5 A A 16 -21.833 -20.801 11.726 1.00 19.44 C
ATOM 18 C6 A A 16 -22.029 -21.751 12.746 1.00 18.54 C
ATOM 19 N6 A A 16 -21.651 -21.567 14.013 1.00 17.30 N
ATOM 20 N1 A A 16 -22.644 -22.905 12.418 1.00 16.51 N
ATOM 21 C2 A A 16 -23.055 -23.067 11.159 1.00 17.41 C
ATOM 22 N3 A A 16 -22.948 -22.241 10.116 1.00 16.31 N
ATOM 23 C4 A A 16 -22.316 -21.116 10.470 1.00 17.70 C
ATOM 24 P C A 17 -26.130 -17.147 8.044 1.00 14.74 P
ATOM 25 OP1 C A 17 -27.190 -16.686 7.102 1.00 14.08 O
ATOM 26 OP2 C A 17 -25.687 -16.257 9.148 1.00 12.44 O
ATOM 27 O5' C A 17 -26.552 -18.539 8.691 1.00 14.70 O
TER
ATOM 1 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 2 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 3 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 4 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 5 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
ATOM 6 C5' C B 28 -24.562 -27.665 20.034 1.00 12.68 C
ATOM 7 C4' C B 28 -24.039 -27.324 18.654 1.00 14.86 C
ATOM 8 O4' C B 28 -24.236 -25.917 18.369 1.00 16.43 O
ATOM 9 C3' C B 28 -22.548 -27.516 18.441 1.00 16.54 C
ATOM 10 O3' C B 28 -22.228 -28.882 18.250 1.00 19.85 O
ATOM 11 C2' C B 28 -22.274 -26.643 17.216 1.00 16.00 C
ATOM 12 O2' C B 28 -22.576 -27.222 15.962 1.00 16.21 O
ATOM 13 C1' C B 28 -23.243 -25.484 17.452 1.00 15.64 C
ATOM 14 N1 C B 28 -22.579 -24.298 17.990 1.00 15.67 N
ATOM 15 C2 C B 28 -22.074 -23.367 17.093 1.00 17.15 C
ATOM 16 O2 C B 28 -22.173 -23.600 15.879 1.00 21.03 O
ATOM 17 N3 C B 28 -21.485 -22.245 17.558 1.00 16.75 N
ATOM 18 C4 C B 28 -21.377 -22.052 18.869 1.00 16.75 C
ATOM 19 N4 C B 28 -20.797 -20.926 19.289 1.00 16.65 N
ATOM 20 C5 C B 28 -21.861 -23.005 19.811 1.00 16.89 C
ATOM 21 C6 C B 28 -22.456 -24.102 19.332 1.00 14.46 C
ATOM 22 P G B 29 -20.707 -29.369 18.407 1.00 21.45 P
ATOM 23 OP1 G B 29 -20.016 -28.990 17.139 1.00 23.89 O
ATOM 24 OP2 G B 29 -20.715 -30.784 18.852 1.00 24.76 O
ATOM 25 O5' G B 29 -20.113 -28.501 19.603 1.00 17.74 O
TER
Atoms:
OP1: (-21.872,-13.826,9.234)
OP2: (-21.104,-15.227,11.250)
C3': (-23.731,-18.061,7.961)
C1': (-22.291,-19.892,8.245)
C5': (-21.823,-16.401,7.658)
O4': (-21.522,-18.797,7.758)
C8: (-21.354,-19.148,10.478)
O2': (-24.135,-20.128,6.727)
C6: (-22.029,-21.751,12.746)
C5: (-21.833,-20.801,11.726)
C4: (-22.316,-21.116,10.470)
P: (-21.114,-14.985,9.782)
C4': (-22.406,-17.748,7.291)
C2': (-23.759,-19.578,7.971)
C2: (-23.055,-23.067,11.159)
N1: (-22.644,-22.905,12.418)
N3: (-22.948,-22.241,10.116)
N6: (-21.651,-21.567,14.013)
N7: (-21.222,-19.554,11.716)
N9: (-22.003,-20.046,9.668)
O5': (-21.677,-16.304,9.080)
O3': (-24.807,-17.514,7.250)
OP2: (-21.104,-15.227,11.250)
C3': (-23.731,-18.061,7.961)
C1': (-22.291,-19.892,8.245)
C5': (-21.823,-16.401,7.658)
O4': (-21.522,-18.797,7.758)
C8: (-21.354,-19.148,10.478)
O2': (-24.135,-20.128,6.727)
C6: (-22.029,-21.751,12.746)
C5: (-21.833,-20.801,11.726)
C4: (-22.316,-21.116,10.470)
P: (-21.114,-14.985,9.782)
C4': (-22.406,-17.748,7.291)
C2': (-23.759,-19.578,7.971)
C2: (-23.055,-23.067,11.159)
N1: (-22.644,-22.905,12.418)
N3: (-22.948,-22.241,10.116)
N6: (-21.651,-21.567,14.013)
N7: (-21.222,-19.554,11.716)
N9: (-22.003,-20.046,9.668)
O5': (-21.677,-16.304,9.080)
O3': (-24.807,-17.514,7.250)
C2: (-22.074,-23.367,17.093)
OP1: (-24.560,-28.530,22.813)
OP2: (-23.133,-26.495,23.406)
C4: (-21.377,-22.052,18.869)
O5': (-23.863,-26.926,21.036)
C3': (-22.548,-27.516,18.441)
C1': (-23.243,-25.484,17.452)
O4': (-24.236,-25.917,18.369)
C5': (-24.562,-27.665,20.034)
P: (-24.202,-27.110,22.588)
O2: (-22.173,-23.600,15.879)
C4': (-24.039,-27.324,18.654)
C2': (-22.274,-26.643,17.216)
O2': (-22.576,-27.222,15.962)
N1: (-22.579,-24.298,17.990)
N3: (-21.485,-22.245,17.558)
N4: (-20.797,-20.926,19.289)
C6: (-22.456,-24.102,19.332)
C5: (-21.861,-23.005,19.811)
O3': (-22.228,-28.882,18.250)
OP1: (-24.560,-28.530,22.813)
OP2: (-23.133,-26.495,23.406)
C4: (-21.377,-22.052,18.869)
O5': (-23.863,-26.926,21.036)
C3': (-22.548,-27.516,18.441)
C1': (-23.243,-25.484,17.452)
O4': (-24.236,-25.917,18.369)
C5': (-24.562,-27.665,20.034)
P: (-24.202,-27.110,22.588)
O2: (-22.173,-23.600,15.879)
C4': (-24.039,-27.324,18.654)
C2': (-22.274,-26.643,17.216)
O2': (-22.576,-27.222,15.962)
N1: (-22.579,-24.298,17.990)
N3: (-21.485,-22.245,17.558)
N4: (-20.797,-20.926,19.289)
C6: (-22.456,-24.102,19.332)
C5: (-21.861,-23.005,19.811)
O3': (-22.228,-28.882,18.250)
Image (generated by PyMOL):